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Links from Nucleotide

Items: 1 to 20 of 2463

2.

rs1490727505 [Homo sapiens]
    Variant type:
    SNV
    Alleles:
    T>C [Show Flanks]
    Chromosome:
    2:196838734 (GRCh38)
    2:197703458 (GRCh37)
    Canonical SPDI:
    NC_000002.12:196838733:T:C
    Gene:
    PGAP1 (Varview)
    Functional Consequence:
    genic_downstream_transcript_variant,3_prime_UTR_variant
    Validated:
    by frequency,by alfa,by cluster
    MAF:
    C=0./0 (ALFA)
    C=0.000038/10 (TOPMED)
    C=0.000064/9 (GnomAD)
    HGVS:
    3.

    rs1490711701 [Homo sapiens]
      Variant type:
      SNV
      Alleles:
      A>G [Show Flanks]
      Chromosome:
      2:196837636 (GRCh38)
      2:197702360 (GRCh37)
      Canonical SPDI:
      NC_000002.12:196837635:A:G
      Gene:
      PGAP1 (Varview)
      Functional Consequence:
      genic_downstream_transcript_variant,3_prime_UTR_variant
      Validated:
      by frequency,by alfa
      MAF:
      G=0./0 (ALFA)
      HGVS:
      4.

      rs1490636487 [Homo sapiens]
        Variant type:
        DELINS
        Alleles:
        A>- [Show Flanks]
        Chromosome:
        2:196835980 (GRCh38)
        2:197700704 (GRCh37)
        Canonical SPDI:
        NC_000002.12:196835979:AAAAA:AAAA
        Gene:
        PGAP1 (Varview)
        Functional Consequence:
        genic_downstream_transcript_variant,3_prime_UTR_variant
        Validated:
        by frequency,by alfa,by cluster
        MAF:
        AAAA=0./0 (ALFA)
        -=0.000004/1 (TOPMED)
        -=0.000007/1 (GnomAD)
        HGVS:
        6.

        rs1489340336 [Homo sapiens]
          Variant type:
          SNV
          Alleles:
          G>C [Show Flanks]
          Chromosome:
          2:196836000 (GRCh38)
          2:197700724 (GRCh37)
          Canonical SPDI:
          NC_000002.12:196835999:G:C
          Gene:
          PGAP1 (Varview)
          Functional Consequence:
          genic_downstream_transcript_variant,3_prime_UTR_variant
          Validated:
          by frequency,by alfa
          MAF:
          C=0./0 (ALFA)
          C=0.000004/1 (TOPMED)
          HGVS:
          7.

          rs1489310262 [Homo sapiens]
            Variant type:
            SNV
            Alleles:
            G>A [Show Flanks]
            Chromosome:
            2:196836148 (GRCh38)
            2:197700872 (GRCh37)
            Canonical SPDI:
            NC_000002.12:196836147:G:A
            Gene:
            PGAP1 (Varview)
            Functional Consequence:
            genic_downstream_transcript_variant,3_prime_UTR_variant
            Validated:
            by frequency,by alfa,by cluster
            MAF:
            A=0./0 (ALFA)
            A=0.000004/1 (TOPMED)
            A=0.000007/1 (GnomAD)
            HGVS:
            8.

            rs1488287831 [Homo sapiens]
              Variant type:
              SNV
              Alleles:
              T>C [Show Flanks]
              Chromosome:
              2:196839534 (GRCh38)
              2:197704258 (GRCh37)
              Canonical SPDI:
              NC_000002.12:196839533:T:C
              Gene:
              PGAP1 (Varview)
              Functional Consequence:
              genic_downstream_transcript_variant,3_prime_UTR_variant
              Validated:
              by frequency,by alfa,by cluster
              MAF:
              C=0./0 (ALFA)
              C=0.000008/2 (TOPMED)
              C=0.000021/3 (GnomAD)
              C=0.000283/5 (TOMMO)
              HGVS:
              10.

              rs1488179799 [Homo sapiens]
                Variant type:
                SNV
                Alleles:
                T>C [Show Flanks]
                Chromosome:
                2:196873713 (GRCh38)
                2:197738437 (GRCh37)
                Canonical SPDI:
                NC_000002.12:196873712:T:C
                Gene:
                PGAP1 (Varview)
                Functional Consequence:
                non_coding_transcript_variant,genic_downstream_transcript_variant,missense_variant,coding_sequence_variant
                Validated:
                by frequency,by alfa,by cluster
                MAF:
                C=0./0 (ALFA)
                C=0.000004/1 (TOPMED)
                C=0.000007/1 (GnomAD)
                HGVS:
                11.

                rs1487860798 [Homo sapiens]
                  Variant type:
                  SNV
                  Alleles:
                  G>C [Show Flanks]
                  Chromosome:
                  2:196847977 (GRCh38)
                  2:197712701 (GRCh37)
                  Canonical SPDI:
                  NC_000002.12:196847976:G:C
                  Gene:
                  PGAP1 (Varview)
                  Functional Consequence:
                  non_coding_transcript_variant,genic_downstream_transcript_variant,missense_variant,coding_sequence_variant
                  Validated:
                  by frequency,by alfa
                  MAF:
                  C=0./0 (ALFA)
                  C=0.000004/1 (TOPMED)
                  HGVS:
                  12.

                  rs1487671168 [Homo sapiens]
                    Variant type:
                    DELINS
                    Alleles:
                    ->A [Show Flanks]
                    Chromosome:
                    2:196835597 (GRCh38)
                    2:197700322 (GRCh37)
                    Canonical SPDI:
                    NC_000002.12:196835597:AAA:AAAA
                    Gene:
                    PGAP1 (Varview)
                    Functional Consequence:
                    genic_downstream_transcript_variant,3_prime_UTR_variant
                    Validated:
                    by frequency,by alfa
                    MAF:
                    AAAA=0./0 (ALFA)
                    HGVS:
                    13.

                    rs1487627711 [Homo sapiens]
                      Variant type:
                      DELINS
                      Alleles:
                      ->T [Show Flanks]
                      Chromosome:
                      2:196833877 (GRCh38)
                      2:197698602 (GRCh37)
                      Canonical SPDI:
                      NC_000002.12:196833877:TTTTTTT:TTTTTTTT
                      Gene:
                      PGAP1 (Varview), C2orf66 (Varview)
                      Functional Consequence:
                      upstream_transcript_variant,genic_downstream_transcript_variant,2KB_upstream_variant,3_prime_UTR_variant
                      Validated:
                      by frequency,by alfa
                      MAF:
                      TTTTTTTT=0./0 (ALFA)
                      T=0.000004/1 (TOPMED)
                      HGVS:
                      14.

                      rs1486976056 [Homo sapiens]
                        Variant type:
                        SNV
                        Alleles:
                        T>C [Show Flanks]
                        Chromosome:
                        2:196838419 (GRCh38)
                        2:197703143 (GRCh37)
                        Canonical SPDI:
                        NC_000002.12:196838418:T:C
                        Gene:
                        PGAP1 (Varview)
                        Functional Consequence:
                        genic_downstream_transcript_variant,3_prime_UTR_variant
                        Validated:
                        by frequency,by alfa
                        MAF:
                        C=0.000071/1 (ALFA)
                        C=0.000011/3 (TOPMED)
                        HGVS:
                        15.

                        rs1486739906 [Homo sapiens]
                          Variant type:
                          SNV
                          Alleles:
                          A>G [Show Flanks]
                          Chromosome:
                          2:196834891 (GRCh38)
                          2:197699615 (GRCh37)
                          Canonical SPDI:
                          NC_000002.12:196834890:A:G
                          Gene:
                          PGAP1 (Varview)
                          Functional Consequence:
                          genic_downstream_transcript_variant,3_prime_UTR_variant
                          Validated:
                          by frequency,by alfa
                          MAF:
                          G=0./0 (ALFA)
                          G=0.000007/1 (GnomAD)
                          HGVS:
                          16.

                          rs1485989774 [Homo sapiens]
                            Variant type:
                            SNV
                            Alleles:
                            C>T [Show Flanks]
                            Chromosome:
                            2:196833374 (GRCh38)
                            2:197698098 (GRCh37)
                            Canonical SPDI:
                            NC_000002.12:196833373:C:T
                            Gene:
                            PGAP1 (Varview), C2orf66 (Varview)
                            Functional Consequence:
                            upstream_transcript_variant,genic_downstream_transcript_variant,2KB_upstream_variant,3_prime_UTR_variant
                            Validated:
                            by frequency,by alfa,by cluster
                            MAF:
                            T=0./0 (ALFA)
                            T=0.000004/1 (TOPMED)
                            T=0.000007/1 (GnomAD)
                            HGVS:
                            17.

                            rs1485898931 [Homo sapiens]
                              Variant type:
                              SNV
                              Alleles:
                              T>A [Show Flanks]
                              Chromosome:
                              2:196893235 (GRCh38)
                              2:197757959 (GRCh37)
                              Canonical SPDI:
                              NC_000002.12:196893234:T:A
                              Gene:
                              PGAP1 (Varview)
                              Functional Consequence:
                              non_coding_transcript_variant,missense_variant,5_prime_UTR_variant,coding_sequence_variant
                              Validated:
                              by frequency,by alfa,by cluster
                              MAF:
                              A=0./0 (ALFA)
                              A=0.000004/1 (TOPMED)
                              A=0.000007/1 (GnomAD)
                              HGVS:
                              18.

                              rs1485824172 [Homo sapiens]
                                Variant type:
                                SNV
                                Alleles:
                                T>G [Show Flanks]
                                Chromosome:
                                2:196843895 (GRCh38)
                                2:197708619 (GRCh37)
                                Canonical SPDI:
                                NC_000002.12:196843894:T:G
                                Gene:
                                PGAP1 (Varview)
                                Functional Consequence:
                                genic_downstream_transcript_variant,missense_variant,coding_sequence_variant
                                Validated:
                                by frequency,by alfa
                                MAF:
                                G=0./0 (ALFA)
                                HGVS:
                                19.

                                rs1484711331 [Homo sapiens]
                                  Variant type:
                                  SNV
                                  Alleles:
                                  A>G [Show Flanks]
                                  Chromosome:
                                  2:196890891 (GRCh38)
                                  2:197755615 (GRCh37)
                                  Canonical SPDI:
                                  NC_000002.12:196890890:A:G
                                  Gene:
                                  PGAP1 (Varview)
                                  Functional Consequence:
                                  synonymous_variant,non_coding_transcript_variant,5_prime_UTR_variant,coding_sequence_variant
                                  Validated:
                                  by frequency
                                  MAF:
                                  G=0.000004/1 (GnomAD_exomes)
                                  HGVS:
                                  20.

                                  rs1483887918 [Homo sapiens]
                                    Variant type:
                                    SNV
                                    Alleles:
                                    A>C [Show Flanks]
                                    Chromosome:
                                    2:196844063 (GRCh38)
                                    2:197708787 (GRCh37)
                                    Canonical SPDI:
                                    NC_000002.12:196844062:A:C
                                    Gene:
                                    PGAP1 (Varview)
                                    Functional Consequence:
                                    genic_downstream_transcript_variant,missense_variant,coding_sequence_variant
                                    Validated:
                                    by frequency,by alfa,by cluster
                                    MAF:
                                    C=0./0 (ALFA)
                                    C=0.000008/2 (TOPMED)
                                    C=0.000014/2 (GnomAD)
                                    HGVS:

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