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Links from Nucleotide

Items: 1 to 20 of 1646

1.

rs1491349679 [Homo sapiens]
    Variant type:
    SNV:
    Alleles:
    GG>-
    Chromosome:
    no mapping
    Canonical SPDI:
    3.

    rs1491025003 has merged into rs34207268 [Homo sapiens]
      Variant type:
      DELINS
      Alleles:
      AA>-,A,AAA,AAAA,AAAAA,AAAAAAAAA [Show Flanks]
      Chromosome:
      2:38797912 (GRCh38)
      2:39025054 (GRCh37)
      Canonical SPDI:
      NC_000002.12:38797901:AAAAAAAAAAAA:AAAAAAAAAA,NC_000002.12:38797901:AAAAAAAAAAAA:AAAAAAAAAAA,NC_000002.12:38797901:AAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000002.12:38797901:AAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000002.12:38797901:AAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000002.12:38797901:AAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA
      Gene:
      DHX57 (Varview)
      Functional Consequence:
      genic_downstream_transcript_variant,3_prime_UTR_variant
      Validated:
      by frequency,by alfa,by cluster
      MAF:
      AAAAAAAAAAA=0./0 (ALFA)
      A=0.4287/2147 (1000Genomes)
      HGVS:
      NC_000002.12:g.38797912_38797913del, NC_000002.12:g.38797913del, NC_000002.12:g.38797913dup, NC_000002.12:g.38797912_38797913dup, NC_000002.12:g.38797911_38797913dup, NC_000002.12:g.38797907_38797913dup, NC_000002.11:g.39025054_39025055del, NC_000002.11:g.39025055del, NC_000002.11:g.39025055dup, NC_000002.11:g.39025054_39025055dup, NC_000002.11:g.39025053_39025055dup, NC_000002.11:g.39025049_39025055dup, XM_011533156.4:c.*540_*541del, XM_011533156.4:c.*541del, XM_011533156.4:c.*541dup, XM_011533156.4:c.*540_*541dup, XM_011533156.4:c.*539_*541dup, XM_011533156.4:c.*535_*541dup, XM_011533156.3:c.*540_*541del, XM_011533156.3:c.*541del, XM_011533156.3:c.*541dup, XM_011533156.3:c.*540_*541dup, XM_011533156.3:c.*539_*541dup, XM_011533156.3:c.*535_*541dup, XM_011533154.3:c.*396_*397del, XM_011533154.3:c.*397del, XM_011533154.3:c.*397dup, XM_011533154.3:c.*396_*397dup, XM_011533154.3:c.*395_*397dup, XM_011533154.3:c.*391_*397dup, XM_011533154.2:c.*396_*397del, XM_011533154.2:c.*397del, XM_011533154.2:c.*397dup, XM_011533154.2:c.*396_*397dup, XM_011533154.2:c.*395_*397dup, XM_011533154.2:c.*391_*397dup, XM_011533154.1:c.*396_*397del, XM_011533154.1:c.*397del, XM_011533154.1:c.*397dup, XM_011533154.1:c.*396_*397dup, XM_011533154.1:c.*395_*397dup, XM_011533154.1:c.*391_*397dup, XM_011533155.3:c.*396_*397del, XM_011533155.3:c.*397del, XM_011533155.3:c.*397dup, XM_011533155.3:c.*396_*397dup, XM_011533155.3:c.*395_*397dup, XM_011533155.3:c.*391_*397dup, XM_011533155.2:c.*396_*397del, XM_011533155.2:c.*397del, XM_011533155.2:c.*397dup, XM_011533155.2:c.*396_*397dup, XM_011533155.2:c.*395_*397dup, XM_011533155.2:c.*391_*397dup, XM_011533155.1:c.*396_*397del, XM_011533155.1:c.*397del, XM_011533155.1:c.*397dup, XM_011533155.1:c.*396_*397dup, XM_011533155.1:c.*395_*397dup, XM_011533155.1:c.*391_*397dup, NM_198963.3:c.*396_*397del, NM_198963.3:c.*397del, NM_198963.3:c.*397dup, NM_198963.3:c.*396_*397dup, NM_198963.3:c.*395_*397dup, NM_198963.3:c.*391_*397dup, NM_198963.2:c.*396_*397del, NM_198963.2:c.*397del, NM_198963.2:c.*397dup, NM_198963.2:c.*396_*397dup, NM_198963.2:c.*395_*397dup, NM_198963.2:c.*391_*397dup, NM_198963.1:c.*396_*397del, NM_198963.1:c.*397del, NM_198963.1:c.*397dup, NM_198963.1:c.*396_*397dup, NM_198963.1:c.*395_*397dup, NM_198963.1:c.*391_*397dup, NM_145646.2:c.*2855_*2856del, NM_145646.2:c.*2856del, NM_145646.2:c.*2856dup, NM_145646.2:c.*2855_*2856dup, NM_145646.2:c.*2854_*2856dup, NM_145646.2:c.*2850_*2856dup, NM_001329963.1:c.*396_*397del, NM_001329963.1:c.*397del, NM_001329963.1:c.*397dup, NM_001329963.1:c.*396_*397dup, NM_001329963.1:c.*395_*397dup, NM_001329963.1:c.*391_*397dup, XM_024453215.1:c.*396_*397del, XM_024453215.1:c.*397del, XM_024453215.1:c.*397dup, XM_024453215.1:c.*396_*397dup, XM_024453215.1:c.*395_*397dup, XM_024453215.1:c.*391_*397dup, NM_145646.1:c.*396dup, NM_145646.1:c.*396del, NM_145646.1:c.*395_*396dup, NM_145646.1:c.*394_*396dup, NM_145646.1:c.*393_*396dup, NM_145646.1:c.*389_*396dup
      5.

      rs1489053235 [Homo sapiens]
        Variant type:
        SNV
        Alleles:
        G>A [Show Flanks]
        Chromosome:
        2:38826563 (GRCh38)
        2:39053705 (GRCh37)
        Canonical SPDI:
        NC_000002.12:38826562:G:A
        Gene:
        DHX57 (Varview)
        Functional Consequence:
        synonymous_variant,3_prime_UTR_variant,coding_sequence_variant
        Validated:
        by frequency,by alfa,by cluster
        MAF:
        A=0./0 (ALFA)
        A=0.000015/4 (TOPMED)
        A=0.000546/1 (Korea1K)
        A=0.000684/2 (KOREAN)
        HGVS:
        6.

        rs1488681068 [Homo sapiens]
          Variant type:
          SNV
          Alleles:
          C>T [Show Flanks]
          Chromosome:
          2:38798138 (GRCh38)
          2:39025280 (GRCh37)
          Canonical SPDI:
          NC_000002.12:38798137:C:T
          Gene:
          DHX57 (Varview)
          Functional Consequence:
          genic_downstream_transcript_variant,3_prime_UTR_variant
          Validated:
          by frequency,by alfa,by cluster
          MAF:
          T=0./0 (ALFA)
          T=0.000021/3 (GnomAD)
          T=0.000023/6 (TOPMED)
          HGVS:
          8.

          rs1488168656 [Homo sapiens]
            Variant type:
            SNV
            Alleles:
            G>A,C [Show Flanks]
            Chromosome:
            2:38826618 (GRCh38)
            2:39053760 (GRCh37)
            Canonical SPDI:
            NC_000002.12:38826617:G:A,NC_000002.12:38826617:G:C
            Gene:
            DHX57 (Varview)
            Functional Consequence:
            missense_variant,3_prime_UTR_variant,coding_sequence_variant
            Validated:
            by frequency,by alfa,by cluster
            MAF:
            C=0.000028/1 (ALFA)
            A=0.000004/1 (TOPMED)
            A=0.000007/1 (GnomAD)
            HGVS:
            NC_000002.12:g.38826618G>A, NC_000002.12:g.38826618G>C, NC_000002.11:g.39053760G>A, NC_000002.11:g.39053760G>C, XM_011533156.4:c.2711C>T, XM_011533156.4:c.2711C>G, XM_011533156.3:c.2711C>T, XM_011533156.3:c.2711C>G, XM_011533156.2:c.2711C>T, XM_011533156.2:c.2711C>G, XM_011533156.1:c.2711C>T, XM_011533156.1:c.2711C>G, XM_011533154.3:c.2711C>T, XM_011533154.3:c.2711C>G, XM_011533154.2:c.2711C>T, XM_011533154.2:c.2711C>G, XM_011533154.1:c.2711C>T, XM_011533154.1:c.2711C>G, XM_011533155.3:c.2711C>T, XM_011533155.3:c.2711C>G, XM_011533155.2:c.2711C>T, XM_011533155.2:c.2711C>G, XM_011533155.1:c.2711C>T, XM_011533155.1:c.2711C>G, NM_198963.3:c.2711C>T, NM_198963.3:c.2711C>G, NM_198963.2:c.2711C>T, NM_198963.2:c.2711C>G, NM_198963.1:c.2711C>T, NM_198963.1:c.2711C>G, NM_145646.2:c.*1009C>T, NM_145646.2:c.*1009C>G, NM_001329963.1:c.2405C>T, NM_001329963.1:c.2405C>G, XM_024453215.1:c.2405C>T, XM_024453215.1:c.2405C>G, XM_047446268.1:c.2711C>T, XM_047446268.1:c.2711C>G, XM_047446269.1:c.*10C>T, XM_047446269.1:c.*10C>G, NM_145646.1:c.1133C>T, NM_145646.1:c.1133C>G, XP_011531458.1:p.Ala904Val, XP_011531458.1:p.Ala904Gly, XP_011531456.1:p.Ala904Val, XP_011531456.1:p.Ala904Gly, XP_011531457.1:p.Ala904Val, XP_011531457.1:p.Ala904Gly, NP_945314.1:p.Ala904Val, NP_945314.1:p.Ala904Gly, NP_001316892.1:p.Ala802Val, NP_001316892.1:p.Ala802Gly, XP_024308983.1:p.Ala802Val, XP_024308983.1:p.Ala802Gly, XP_047302224.1:p.Ala904Val, XP_047302224.1:p.Ala904Gly
            9.

            rs1487079248 [Homo sapiens]
              Variant type:
              SNV
              Alleles:
              T>G [Show Flanks]
              Chromosome:
              2:38798293 (GRCh38)
              2:39025435 (GRCh37)
              Canonical SPDI:
              NC_000002.12:38798292:T:G
              Gene:
              DHX57 (Varview)
              Functional Consequence:
              genic_downstream_transcript_variant,3_prime_UTR_variant
              Validated:
              by frequency,by alfa,by cluster
              MAF:
              G=0./0 (ALFA)
              G=0.000004/1 (TOPMED)
              G=0.000007/1 (GnomAD)
              HGVS:
              12.

              rs1485875507 [Homo sapiens]
                Variant type:
                SNV
                Alleles:
                C>G [Show Flanks]
                Chromosome:
                2:38797982 (GRCh38)
                2:39025124 (GRCh37)
                Canonical SPDI:
                NC_000002.12:38797981:C:G
                Gene:
                DHX57 (Varview)
                Functional Consequence:
                genic_downstream_transcript_variant,3_prime_UTR_variant
                Validated:
                by frequency,by alfa,by cluster
                MAF:
                G=0./0 (ALFA)
                G=0.000004/1 (TOPMED)
                G=0.000007/1 (GnomAD)
                HGVS:
                14.

                rs1485384747 [Homo sapiens]
                  Variant type:
                  SNV
                  Alleles:
                  G>A [Show Flanks]
                  Chromosome:
                  2:38802907 (GRCh38)
                  2:39030049 (GRCh37)
                  Canonical SPDI:
                  NC_000002.12:38802906:G:A
                  Gene:
                  DHX57 (Varview)
                  Functional Consequence:
                  genic_downstream_transcript_variant,synonymous_variant,coding_sequence_variant
                  Validated:
                  by frequency
                  MAF:
                  A=0.000004/1 (GnomAD_exomes)
                  HGVS:
                  17.

                  rs1484481718 [Homo sapiens]
                    Variant type:
                    SNV
                    Alleles:
                    C>A,T [Show Flanks]
                    Chromosome:
                    2:38861536 (GRCh38)
                    2:39088678 (GRCh37)
                    Canonical SPDI:
                    NC_000002.12:38861535:C:A,NC_000002.12:38861535:C:T
                    Gene:
                    DHX57 (Varview)
                    Functional Consequence:
                    stop_gained,missense_variant,coding_sequence_variant
                    Validated:
                    by frequency,by alfa
                    MAF:
                    T=0.00005/1 (ALFA)
                    HGVS:
                    NC_000002.12:g.38861536C>A, NC_000002.12:g.38861536C>T, NC_000002.11:g.39088678C>A, NC_000002.11:g.39088678C>T, XM_011533156.4:c.874G>T, XM_011533156.4:c.874G>A, XM_011533156.3:c.874G>T, XM_011533156.3:c.874G>A, XM_011533156.2:c.874G>T, XM_011533156.2:c.874G>A, XM_011533156.1:c.874G>T, XM_011533156.1:c.874G>A, XM_011533154.3:c.874G>T, XM_011533154.3:c.874G>A, XM_011533154.2:c.874G>T, XM_011533154.2:c.874G>A, XM_011533154.1:c.874G>T, XM_011533154.1:c.874G>A, XM_011533155.3:c.874G>T, XM_011533155.3:c.874G>A, XM_011533155.2:c.874G>T, XM_011533155.2:c.874G>A, XM_011533155.1:c.874G>T, XM_011533155.1:c.874G>A, NM_198963.3:c.874G>T, NM_198963.3:c.874G>A, NM_198963.2:c.874G>T, NM_198963.2:c.874G>A, NM_198963.1:c.874G>T, NM_198963.1:c.874G>A, NM_145646.2:c.568G>T, NM_145646.2:c.568G>A, NM_144995.2:c.568G>T, NM_144995.2:c.568G>A, NM_001329963.1:c.568G>T, NM_001329963.1:c.568G>A, XM_024453215.1:c.568G>T, XM_024453215.1:c.568G>A, XM_047446268.1:c.874G>T, XM_047446268.1:c.874G>A, XM_047446269.1:c.874G>T, XM_047446269.1:c.874G>A, NM_144995.1:c.568G>T, NM_144995.1:c.568G>A, XP_011531458.1:p.Glu292Ter, XP_011531458.1:p.Glu292Lys, XP_011531456.1:p.Glu292Ter, XP_011531456.1:p.Glu292Lys, XP_011531457.1:p.Glu292Ter, XP_011531457.1:p.Glu292Lys, NP_945314.1:p.Glu292Ter, NP_945314.1:p.Glu292Lys, NP_001316892.1:p.Glu190Ter, NP_001316892.1:p.Glu190Lys, XP_024308983.1:p.Glu190Ter, XP_024308983.1:p.Glu190Lys, XP_047302224.1:p.Glu292Ter, XP_047302224.1:p.Glu292Lys, XP_047302225.1:p.Glu292Ter, XP_047302225.1:p.Glu292Lys
                    18.

                    rs1484445481 [Homo sapiens]
                      Variant type:
                      SNV
                      Alleles:
                      C>A [Show Flanks]
                      Chromosome:
                      2:38875866 (GRCh38)
                      2:39103008 (GRCh37)
                      Canonical SPDI:
                      NC_000002.12:38875865:C:A
                      Gene:
                      DHX57 (Varview), MORN2 (Varview)
                      Functional Consequence:
                      2KB_upstream_variant,genic_upstream_transcript_variant,upstream_transcript_variant,5_prime_UTR_variant
                      Validated:
                      by frequency,by alfa,by cluster
                      MAF:
                      A=0./0 (ALFA)
                      A=0.000004/1 (TOPMED)
                      HGVS:
                      20.

                      rs1482633962 [Homo sapiens]
                        Variant type:
                        SNV
                        Alleles:
                        C>T [Show Flanks]
                        Chromosome:
                        2:38875829 (GRCh38)
                        2:39102971 (GRCh37)
                        Canonical SPDI:
                        NC_000002.12:38875828:C:T
                        Gene:
                        DHX57 (Varview), MORN2 (Varview)
                        Functional Consequence:
                        2KB_upstream_variant,genic_upstream_transcript_variant,upstream_transcript_variant,5_prime_UTR_variant
                        Validated:
                        by frequency,by alfa,by cluster
                        MAF:
                        T=0./0 (ALFA)
                        T=0.000011/3 (TOPMED)
                        T=0.000021/3 (GnomAD)
                        HGVS:

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