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1.

rs1491520594 has merged into rs1555339771 [Homo sapiens]
    Variant type:
    DELINS
    Alleles:
    TTTTTTTTTTT>-,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT [Show Flanks]
    Chromosome:
    14:53949891 (GRCh38)
    14:54416609 (GRCh37)
    Canonical SPDI:
    NC_000014.9:53949883:TTTTTTTTTTTTTTTTTT:TTTTTTT,NC_000014.9:53949883:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000014.9:53949883:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000014.9:53949883:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000014.9:53949883:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000014.9:53949883:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000014.9:53949883:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000014.9:53949883:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000014.9:53949883:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000014.9:53949883:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000014.9:53949883:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000014.9:53949883:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000014.9:53949883:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT
    Gene:
    BMP4 (Varview), MIR5580 (Varview)
    Functional Consequence:
    upstream_transcript_variant,2KB_upstream_variant,3_prime_UTR_variant
    Clinical significance:
    likely-benign,uncertain-significance,benign
    Validated:
    by frequency,by alfa,by cluster
    MAF:
    TTTTTTTTTTTT=0./0 (ALFA)
    -=0.03114/18 (NorthernSweden)
    HGVS:
    NC_000014.9:g.53949891_53949901del, NC_000014.9:g.53949896_53949901del, NC_000014.9:g.53949897_53949901del, NC_000014.9:g.53949898_53949901del, NC_000014.9:g.53949899_53949901del, NC_000014.9:g.53949900_53949901del, NC_000014.9:g.53949901del, NC_000014.9:g.53949901dup, NC_000014.9:g.53949900_53949901dup, NC_000014.9:g.53949899_53949901dup, NC_000014.9:g.53949898_53949901dup, NC_000014.9:g.53949897_53949901dup, NC_000014.9:g.53949896_53949901dup, NC_000014.8:g.54416609_54416619del, NC_000014.8:g.54416614_54416619del, NC_000014.8:g.54416615_54416619del, NC_000014.8:g.54416616_54416619del, NC_000014.8:g.54416617_54416619del, NC_000014.8:g.54416618_54416619del, NC_000014.8:g.54416619del, NC_000014.8:g.54416619dup, NC_000014.8:g.54416618_54416619dup, NC_000014.8:g.54416617_54416619dup, NC_000014.8:g.54416616_54416619dup, NC_000014.8:g.54416615_54416619dup, NC_000014.8:g.54416614_54416619dup, NG_009215.1:g.11943_11953del, NG_009215.1:g.11948_11953del, NG_009215.1:g.11949_11953del, NG_009215.1:g.11950_11953del, NG_009215.1:g.11951_11953del, NG_009215.1:g.11952_11953del, NG_009215.1:g.11953del, NG_009215.1:g.11953dup, NG_009215.1:g.11952_11953dup, NG_009215.1:g.11951_11953dup, NG_009215.1:g.11950_11953dup, NG_009215.1:g.11949_11953dup, NG_009215.1:g.11948_11953dup, NM_001202.6:c.*138_*148del, NM_001202.6:c.*143_*148del, NM_001202.6:c.*144_*148del, NM_001202.6:c.*145_*148del, NM_001202.6:c.*146_*148del, NM_001202.6:c.*147_*148del, NM_001202.6:c.*148del, NM_001202.6:c.*148dup, NM_001202.6:c.*147_*148dup, NM_001202.6:c.*146_*148dup, NM_001202.6:c.*145_*148dup, NM_001202.6:c.*144_*148dup, NM_001202.6:c.*143_*148dup, NM_001202.5:c.*138_*148del, NM_001202.5:c.*143_*148del, NM_001202.5:c.*144_*148del, NM_001202.5:c.*145_*148del, NM_001202.5:c.*146_*148del, NM_001202.5:c.*147_*148del, NM_001202.5:c.*148del, NM_001202.5:c.*148dup, NM_001202.5:c.*147_*148dup, NM_001202.5:c.*146_*148dup, NM_001202.5:c.*145_*148dup, NM_001202.5:c.*144_*148dup, NM_001202.5:c.*143_*148dup, NM_001202.4:c.*138_*148del, NM_001202.4:c.*143_*148del, NM_001202.4:c.*144_*148del, NM_001202.4:c.*145_*148del, NM_001202.4:c.*146_*148del, NM_001202.4:c.*147_*148del, NM_001202.4:c.*148del, NM_001202.4:c.*148dup, NM_001202.4:c.*147_*148dup, NM_001202.4:c.*146_*148dup, NM_001202.4:c.*145_*148dup, NM_001202.4:c.*144_*148dup, NM_001202.4:c.*143_*148dup, NM_001202.3:c.*138_*148del, NM_001202.3:c.*143_*148del, NM_001202.3:c.*144_*148del, NM_001202.3:c.*145_*148del, NM_001202.3:c.*146_*148del, NM_001202.3:c.*147_*148del, NM_001202.3:c.*148del, NM_001202.3:c.*148dup, NM_001202.3:c.*147_*148dup, NM_001202.3:c.*146_*148dup, NM_001202.3:c.*145_*148dup, NM_001202.3:c.*144_*148dup, NM_001202.3:c.*143_*148dup, NM_130850.5:c.*138_*148del, NM_130850.5:c.*143_*148del, NM_130850.5:c.*144_*148del, NM_130850.5:c.*145_*148del, NM_130850.5:c.*146_*148del, NM_130850.5:c.*147_*148del, NM_130850.5:c.*148del, NM_130850.5:c.*148dup, NM_130850.5:c.*147_*148dup, NM_130850.5:c.*146_*148dup, NM_130850.5:c.*145_*148dup, NM_130850.5:c.*144_*148dup, NM_130850.5:c.*143_*148dup, NM_130850.4:c.*138_*148del, NM_130850.4:c.*143_*148del, NM_130850.4:c.*144_*148del, NM_130850.4:c.*145_*148del, NM_130850.4:c.*146_*148del, NM_130850.4:c.*147_*148del, NM_130850.4:c.*148del, NM_130850.4:c.*148dup, NM_130850.4:c.*147_*148dup, NM_130850.4:c.*146_*148dup, NM_130850.4:c.*145_*148dup, NM_130850.4:c.*144_*148dup, NM_130850.4:c.*143_*148dup, NM_130850.3:c.*138_*148del, NM_130850.3:c.*143_*148del, NM_130850.3:c.*144_*148del, NM_130850.3:c.*145_*148del, NM_130850.3:c.*146_*148del, NM_130850.3:c.*147_*148del, NM_130850.3:c.*148del, NM_130850.3:c.*148dup, NM_130850.3:c.*147_*148dup, NM_130850.3:c.*146_*148dup, NM_130850.3:c.*145_*148dup, NM_130850.3:c.*144_*148dup, NM_130850.3:c.*143_*148dup, NM_130850.2:c.*138_*148del, NM_130850.2:c.*143_*148del, NM_130850.2:c.*144_*148del, NM_130850.2:c.*145_*148del, NM_130850.2:c.*146_*148del, NM_130850.2:c.*147_*148del, NM_130850.2:c.*148del, NM_130850.2:c.*148dup, NM_130850.2:c.*147_*148dup, NM_130850.2:c.*146_*148dup, NM_130850.2:c.*145_*148dup, NM_130850.2:c.*144_*148dup, NM_130850.2:c.*143_*148dup, NM_130851.4:c.*138_*148del, NM_130851.4:c.*143_*148del, NM_130851.4:c.*144_*148del, NM_130851.4:c.*145_*148del, NM_130851.4:c.*146_*148del, NM_130851.4:c.*147_*148del, NM_130851.4:c.*148del, NM_130851.4:c.*148dup, NM_130851.4:c.*147_*148dup, NM_130851.4:c.*146_*148dup, NM_130851.4:c.*145_*148dup, NM_130851.4:c.*144_*148dup, NM_130851.4:c.*143_*148dup, NM_130851.3:c.*138_*148del, NM_130851.3:c.*143_*148del, NM_130851.3:c.*144_*148del, NM_130851.3:c.*145_*148del, NM_130851.3:c.*146_*148del, NM_130851.3:c.*147_*148del, NM_130851.3:c.*148del, NM_130851.3:c.*148dup, NM_130851.3:c.*147_*148dup, NM_130851.3:c.*146_*148dup, NM_130851.3:c.*145_*148dup, NM_130851.3:c.*144_*148dup, NM_130851.3:c.*143_*148dup, NM_130851.2:c.*138_*148del, NM_130851.2:c.*143_*148del, NM_130851.2:c.*144_*148del, NM_130851.2:c.*145_*148del, NM_130851.2:c.*146_*148del, NM_130851.2:c.*147_*148del, NM_130851.2:c.*148del, NM_130851.2:c.*148dup, NM_130851.2:c.*147_*148dup, NM_130851.2:c.*146_*148dup, NM_130851.2:c.*145_*148dup, NM_130851.2:c.*144_*148dup, NM_130851.2:c.*143_*148dup, NM_001347913.2:c.*138_*148del, NM_001347913.2:c.*143_*148del, NM_001347913.2:c.*144_*148del, NM_001347913.2:c.*145_*148del, NM_001347913.2:c.*146_*148del, NM_001347913.2:c.*147_*148del, NM_001347913.2:c.*148del, NM_001347913.2:c.*148dup, NM_001347913.2:c.*147_*148dup, NM_001347913.2:c.*146_*148dup, NM_001347913.2:c.*145_*148dup, NM_001347913.2:c.*144_*148dup, NM_001347913.2:c.*143_*148dup, NM_001347913.1:c.*138_*148del, NM_001347913.1:c.*143_*148del, NM_001347913.1:c.*144_*148del, NM_001347913.1:c.*145_*148del, NM_001347913.1:c.*146_*148del, NM_001347913.1:c.*147_*148del, NM_001347913.1:c.*148del, NM_001347913.1:c.*148dup, NM_001347913.1:c.*147_*148dup, NM_001347913.1:c.*146_*148dup, NM_001347913.1:c.*145_*148dup, NM_001347913.1:c.*144_*148dup, NM_001347913.1:c.*143_*148dup, NM_001347914.2:c.*138_*148del, NM_001347914.2:c.*143_*148del, NM_001347914.2:c.*144_*148del, NM_001347914.2:c.*145_*148del, NM_001347914.2:c.*146_*148del, NM_001347914.2:c.*147_*148del, NM_001347914.2:c.*148del, NM_001347914.2:c.*148dup, NM_001347914.2:c.*147_*148dup, NM_001347914.2:c.*146_*148dup, NM_001347914.2:c.*145_*148dup, NM_001347914.2:c.*144_*148dup, NM_001347914.2:c.*143_*148dup, NM_001347914.1:c.*138_*148del, NM_001347914.1:c.*143_*148del, NM_001347914.1:c.*144_*148del, NM_001347914.1:c.*145_*148del, NM_001347914.1:c.*146_*148del, NM_001347914.1:c.*147_*148del, NM_001347914.1:c.*148del, NM_001347914.1:c.*148dup, NM_001347914.1:c.*147_*148dup, NM_001347914.1:c.*146_*148dup, NM_001347914.1:c.*145_*148dup, NM_001347914.1:c.*144_*148dup, NM_001347914.1:c.*143_*148dup, NM_001347915.2:c.*138_*148del, NM_001347915.2:c.*143_*148del, NM_001347915.2:c.*144_*148del, NM_001347915.2:c.*145_*148del, NM_001347915.2:c.*146_*148del, NM_001347915.2:c.*147_*148del, NM_001347915.2:c.*148del, NM_001347915.2:c.*148dup, NM_001347915.2:c.*147_*148dup, NM_001347915.2:c.*146_*148dup, NM_001347915.2:c.*145_*148dup, NM_001347915.2:c.*144_*148dup, NM_001347915.2:c.*143_*148dup, NM_001347915.1:c.*138_*148del, NM_001347915.1:c.*143_*148del, NM_001347915.1:c.*144_*148del, NM_001347915.1:c.*145_*148del, NM_001347915.1:c.*146_*148del, NM_001347915.1:c.*147_*148del, NM_001347915.1:c.*148del, NM_001347915.1:c.*148dup, NM_001347915.1:c.*147_*148dup, NM_001347915.1:c.*146_*148dup, NM_001347915.1:c.*145_*148dup, NM_001347915.1:c.*144_*148dup, NM_001347915.1:c.*143_*148dup, NM_001347916.1:c.*138_*148del, NM_001347916.1:c.*143_*148del, NM_001347916.1:c.*144_*148del, NM_001347916.1:c.*145_*148del, NM_001347916.1:c.*146_*148del, NM_001347916.1:c.*147_*148del, NM_001347916.1:c.*148del, NM_001347916.1:c.*148dup, NM_001347916.1:c.*147_*148dup, NM_001347916.1:c.*146_*148dup, NM_001347916.1:c.*145_*148dup, NM_001347916.1:c.*144_*148dup, NM_001347916.1:c.*143_*148dup, NM_001347917.1:c.*138_*148del, NM_001347917.1:c.*143_*148del, NM_001347917.1:c.*144_*148del, NM_001347917.1:c.*145_*148del, NM_001347917.1:c.*146_*148del, NM_001347917.1:c.*147_*148del, NM_001347917.1:c.*148del, NM_001347917.1:c.*148dup, NM_001347917.1:c.*147_*148dup, NM_001347917.1:c.*146_*148dup, NM_001347917.1:c.*145_*148dup, NM_001347917.1:c.*144_*148dup, NM_001347917.1:c.*143_*148dup, NM_001347912.1:c.*138_*148del, NM_001347912.1:c.*143_*148del, NM_001347912.1:c.*144_*148del, NM_001347912.1:c.*145_*148del, NM_001347912.1:c.*146_*148del, NM_001347912.1:c.*147_*148del, NM_001347912.1:c.*148del, NM_001347912.1:c.*148dup, NM_001347912.1:c.*147_*148dup, NM_001347912.1:c.*146_*148dup, NM_001347912.1:c.*145_*148dup, NM_001347912.1:c.*144_*148dup, NM_001347912.1:c.*143_*148dup
    4.

    rs1487544720 [Homo sapiens]
      Variant type:
      SNV
      Alleles:
      C>T [Show Flanks]
      Chromosome:
      14:53950299 (GRCh38)
      14:54417017 (GRCh37)
      Canonical SPDI:
      NC_000014.9:53950298:C:T
      Gene:
      BMP4 (Varview), MIR5580 (Varview)
      Functional Consequence:
      coding_sequence_variant,2KB_upstream_variant,upstream_transcript_variant,synonymous_variant
      Validated:
      by frequency,by cluster
      MAF:
      T=0.000007/1 (GnomAD)
      HGVS:
      6.
      7.

      rs1486737404 [Homo sapiens]
        Variant type:
        SNV
        Alleles:
        T>C,G [Show Flanks]
        Chromosome:
        14:53952142 (GRCh38)
        14:54418860 (GRCh37)
        Canonical SPDI:
        NC_000014.9:53952141:T:C,NC_000014.9:53952141:T:G
        Gene:
        BMP4 (Varview)
        Functional Consequence:
        coding_sequence_variant,missense_variant,5_prime_UTR_variant,synonymous_variant
        Validated:
        by frequency,by alfa,by cluster
        MAF:
        C=0./0 (ALFA)
        C=0.000004/1 (GnomAD_exomes)
        C=0.000008/2 (TOPMED)
        C=0.000021/3 (GnomAD)
        G=0.000546/1 (Korea1K)
        HGVS:
        NC_000014.9:g.53952142T>C, NC_000014.9:g.53952142T>G, NC_000014.8:g.54418860T>C, NC_000014.8:g.54418860T>G, NG_009215.1:g.9695A>G, NG_009215.1:g.9695A>C, NM_001202.6:c.81A>G, NM_001202.6:c.81A>C, NM_001202.5:c.81A>G, NM_001202.5:c.81A>C, NM_001202.4:c.81A>G, NM_001202.4:c.81A>C, NM_001202.3:c.81A>G, NM_001202.3:c.81A>C, NM_130850.5:c.81A>G, NM_130850.5:c.81A>C, NM_130850.4:c.81A>G, NM_130850.4:c.81A>C, NM_130850.3:c.81A>G, NM_130850.3:c.81A>C, NM_130850.2:c.81A>G, NM_130850.2:c.81A>C, NM_130851.4:c.81A>G, NM_130851.4:c.81A>C, NM_130851.3:c.81A>G, NM_130851.3:c.81A>C, NM_130851.2:c.81A>G, NM_130851.2:c.81A>C, NM_001347913.2:c.-109A>G, NM_001347913.2:c.-109A>C, NM_001347913.1:c.-109A>G, NM_001347913.1:c.-109A>C, NM_001347914.2:c.81A>G, NM_001347914.2:c.81A>C, NM_001347914.1:c.81A>G, NM_001347914.1:c.81A>C, NM_001347915.2:c.-109A>G, NM_001347915.2:c.-109A>C, NM_001347915.1:c.-109A>G, NM_001347915.1:c.-109A>C, NM_001347916.1:c.81A>G, NM_001347916.1:c.81A>C, NM_001347917.1:c.-109A>G, NM_001347917.1:c.-109A>C, NM_001347912.1:c.222A>G, NM_001347912.1:c.222A>C, NP_001193.2:p.Ile27Met, NP_570911.2:p.Ile27Met, NP_570912.2:p.Ile27Met, NP_001334843.1:p.Ile27Met, NP_001334845.1:p.Ile27Met, NP_001334841.1:p.Ile74Met
        8.

        rs1477954147 [Homo sapiens]
          Variant type:
          DELINS
          Alleles:
          ATGTGGTGTGTGTGTGTGGTGT>- [Show Flanks]
          Chromosome:
          14:53949977 (GRCh38)
          14:54416695 (GRCh37)
          Canonical SPDI:
          NC_000014.9:53949961:GTGTGTGTGTGGTGTATGTGGTGTGTGTGTGTGGTGT:GTGTGTGTGTGGTGT
          Gene:
          BMP4 (Varview), MIR5580 (Varview)
          Functional Consequence:
          upstream_transcript_variant,2KB_upstream_variant,3_prime_UTR_variant
          Validated:
          by frequency,by alfa,by cluster
          MAF:
          GTGTGTGTGTGGTGT=0./0 (ALFA)
          -=0.000004/1 (TOPMED)
          -=0.000007/1 (GnomAD)
          HGVS:
          13.
          16.

          rs1462409541 [Homo sapiens]
            Variant type:
            SNV
            Alleles:
            T>C [Show Flanks]
            Chromosome:
            14:53956837 (GRCh38)
            14:54423555 (GRCh37)
            Canonical SPDI:
            NC_000014.9:53956836:T:C
            Gene:
            BMP4 (Varview), LOC124903317 (Varview)
            Functional Consequence:
            intron_variant,upstream_transcript_variant,5_prime_UTR_variant,genic_upstream_transcript_variant
            Validated:
            by frequency,by alfa,by cluster
            MAF:
            C=0./0 (ALFA)
            C=0.000007/1 (GnomAD)
            C=0.000008/2 (TOPMED)
            C=0.000546/1 (Korea1K)
            HGVS:
            17.

            rs1460775726 [Homo sapiens]
              Variant type:
              SNV
              Alleles:
              A>G [Show Flanks]
              Chromosome:
              14:53950506 (GRCh38)
              14:54417224 (GRCh37)
              Canonical SPDI:
              NC_000014.9:53950505:A:G
              Gene:
              BMP4 (Varview)
              Functional Consequence:
              synonymous_variant,coding_sequence_variant
              Clinical significance:
              uncertain-significance,likely-benign
              Validated:
              by frequency,by alfa,by cluster
              MAF:
              G=0.000028/1 (ALFA)
              G=0.000004/1 (GnomAD_exomes)
              G=0.000029/4 (GnomAD)
              HGVS:
              19.

              rs1457244951 [Homo sapiens]
                Variant type:
                SNV
                Alleles:
                T>C [Show Flanks]
                Chromosome:
                14:53949818 (GRCh38)
                14:54416536 (GRCh37)
                Canonical SPDI:
                NC_000014.9:53949817:T:C
                Gene:
                BMP4 (Varview), MIR5580 (Varview)
                Functional Consequence:
                upstream_transcript_variant,2KB_upstream_variant,3_prime_UTR_variant
                Validated:
                by frequency,by alfa,by cluster
                MAF:
                C=0./0 (ALFA)
                C=0.000004/1 (TOPMED)
                C=0.000007/1 (GnomAD)
                HGVS:

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