SNP Links for Nucleotide (Select 1174099561) - SNP

Links from Nucleotide

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Select item 14905204081.

rs1490520408 has merged into rs920155356 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTT>-,T,TTTT,TTTTT [Show Flanks]
Chromosome:: 2:87455472 (GRCh38)
2:87754991 (GRCh37)
Canonical SPDI:: NC_000002.12:87455461:TTTTTTTTTTTTT:TTTTTTTTTT,NC_000002.12:87455461:TTTTTTTTTTTTT:TTTTTTTTTTT,NC_000002.12:87455461:TTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000002.12:87455461:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT
Gene:: CYTOR (Varview), LINC01943 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTT=0./0 (ALFA)
TT=0.000007/1 (GnomAD)
T=0.000814/14 (TOMMO)
HGVS:: NC_000002.12:g.87455472_87455474del, NC_000002.12:g.87455473_87455474del, NC_000002.12:g.87455474dup, NC_000002.12:g.87455473_87455474dup, NC_000002.11:g.87754991_87754993del, NC_000002.11:g.87754992_87754993del, NC_000002.11:g.87754993dup, NC_000002.11:g.87754992_87754993dup, NR_024205.3:n.46_48del, NR_024205.3:n.47_48del, NR_024205.3:n.48dup, NR_024205.3:n.47_48dup, NR_024205.2:n.46_48del, NR_024205.2:n.47_48del, NR_024205.2:n.48dup, NR_024205.2:n.47_48dup, NR_024205.1:n.18_20del, NR_024205.1:n.19_20del, NR_024205.1:n.20dup, NR_024205.1:n.19_20dup, NM_052871.3:c.-222_-220del, NM_052871.3:c.-221_-220del, NM_052871.3:c.-220dup, NM_052871.3:c.-221_-220dup, NR_024204.2:n.46_48del, NR_024204.2:n.47_48del, NR_024204.2:n.48dup, NR_024204.2:n.47_48dup, NR_024204.1:n.18_20del, NR_024204.1:n.19_20del, NR_024204.1:n.20dup, NR_024204.1:n.19_20dup, NR_024206.2:n.46_48del, NR_024206.2:n.47_48del, NR_024206.2:n.48dup, NR_024206.2:n.47_48dup, NR_024206.1:n.18_20del, NR_024206.1:n.19_20del, NR_024206.1:n.20dup, NR_024206.1:n.19_20dup, NM_052871.2:c.-222_-220del, NM_052871.2:c.-221_-220del, NM_052871.2:c.-220dup, NM_052871.2:c.-221_-220dup, NR_146461.1:n.46_48del, NR_146461.1:n.47_48del, NR_146461.1:n.48dup, NR_146461.1:n.47_48dup

Select item 14893155542.

rs1489315554 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:87455603 (GRCh38)
2:87755122 (GRCh37)
Canonical SPDI:: NC_000002.12:87455602:A:G
Gene:: CYTOR (Varview), LINC01943 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.87455603A>G, NC_000002.11:g.87755122A>G, NR_024205.3:n.177A>G, NR_024205.2:n.177A>G, NR_024205.1:n.149A>G, NM_052871.3:c.-91A>G, NR_024204.2:n.177A>G, NR_024204.1:n.149A>G, NR_024206.2:n.177A>G, NR_024206.1:n.149A>G, NM_052871.2:c.-91A>G, NR_146461.1:n.177A>G

Select item 14875747613.

rs1487574761 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:87480241 (GRCh38)
2:87779760 (GRCh37)
Canonical SPDI:: NC_000002.12:87480240:G:A
Gene:: CYTOR (Varview), LINC01943 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000002.12:g.87480241G>A, NC_000002.11:g.87779760G>A, NR_024204.2:n.347G>A, NR_024204.1:n.319G>A, NR_146461.1:n.238G>A

Select item 14832016794.

rs1483201679 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:87455641 (GRCh38)
2:87755160 (GRCh37)
Canonical SPDI:: NC_000002.12:87455640:C:T
Gene:: CYTOR (Varview), LINC01943 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000084/1 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.87455641C>T, NC_000002.11:g.87755160C>T, NR_024205.3:n.215C>T, NR_024205.2:n.215C>T, NR_024205.1:n.187C>T, NM_052871.3:c.-53C>T, NR_024204.2:n.215C>T, NR_024204.1:n.187C>T, NR_024206.2:n.215C>T, NR_024206.1:n.187C>T, NM_052871.2:c.-53C>T, NR_146461.1:n.215C>T

Select item 14819025515.

rs1481902551 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 2:87521311 (GRCh38)
2:87820830 (GRCh37)
Canonical SPDI:: NC_000002.12:87521310:G:A,NC_000002.12:87521310:G:T
Gene:: CYTOR (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000019/5 (TOPMED)
T=0.00006/1 (TOMMO)
HGVS:: NC_000002.12:g.87521311G>A, NC_000002.12:g.87521311G>T, NC_000002.11:g.87820830G>A, NC_000002.11:g.87820830G>T, NR_024205.3:n.470G>A, NR_024205.3:n.470G>T, NR_024205.2:n.470G>A, NR_024205.2:n.470G>T, NR_024205.1:n.442G>A, NR_024205.1:n.442G>T, NM_052871.3:c.57G>A, NM_052871.3:c.57G>T, NR_024204.2:n.634G>A, NR_024204.2:n.634G>T, NR_024204.1:n.606G>A, NR_024204.1:n.606G>T, NR_024206.2:n.324G>A, NR_024206.2:n.324G>T, NR_024206.1:n.296G>A, NR_024206.1:n.296G>T, NM_052871.2:c.57G>A, NM_052871.2:c.57G>T, NM_052871.1:c.57G>A, NM_052871.1:c.57G>T, NR_146461.1:n.525G>A, NR_146461.1:n.525G>T, NR_146460.1:n.353G>A, NR_146460.1:n.353G>T

Select item 14817023566.

rs1481702356 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 2:87455532 (GRCh38)
2:87755051 (GRCh37)
Canonical SPDI:: NC_000002.12:87455531:G:A,NC_000002.12:87455531:G:C
Gene:: CYTOR (Varview), LINC01943 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00031/2 (1000Genomes)
HGVS:: NC_000002.12:g.87455532G>A, NC_000002.12:g.87455532G>C, NC_000002.11:g.87755051G>A, NC_000002.11:g.87755051G>C, NR_024205.3:n.106G>A, NR_024205.3:n.106G>C, NR_024205.2:n.106G>A, NR_024205.2:n.106G>C, NR_024205.1:n.78G>A, NR_024205.1:n.78G>C, NM_052871.3:c.-162G>A, NM_052871.3:c.-162G>C, NR_024204.2:n.106G>A, NR_024204.2:n.106G>C, NR_024204.1:n.78G>A, NR_024204.1:n.78G>C, NR_024206.2:n.106G>A, NR_024206.2:n.106G>C, NR_024206.1:n.78G>A, NR_024206.1:n.78G>C, NM_052871.2:c.-162G>A, NM_052871.2:c.-162G>C, NR_146461.1:n.106G>A, NR_146461.1:n.106G>C

Select item 14726041317.

rs1472604131 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:87455479 (GRCh38)
2:87754998 (GRCh37)
Canonical SPDI:: NC_000002.12:87455478:C:T
Gene:: CYTOR (Varview), LINC01943 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.00208/34 (ALFA)
HGVS:: NC_000002.12:g.87455479C>T, NC_000002.11:g.87754998C>T, NR_024205.3:n.53C>T, NR_024205.2:n.53C>T, NR_024205.1:n.25C>T, NM_052871.3:c.-215C>T, NR_024204.2:n.53C>T, NR_024204.1:n.25C>T, NR_024206.2:n.53C>T, NR_024206.1:n.25C>T, NM_052871.2:c.-215C>T, NR_146461.1:n.53C>T

Select item 14671234448.

rs1467123444 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:87455459 (GRCh38)
2:87754978 (GRCh37)
Canonical SPDI:: NC_000002.12:87455458:G:A
Gene:: CYTOR (Varview), LINC01943 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000038/10 (TOPMED)
HGVS:: NC_000002.12:g.87455459G>A, NC_000002.11:g.87754978G>A, NR_024205.3:n.33G>A, NR_024205.2:n.33G>A, NR_024205.1:n.5G>A, NR_024204.2:n.33G>A, NR_024204.1:n.5G>A, NR_024206.2:n.33G>A, NR_024206.1:n.5G>A, NM_052871.2:c.-235G>A, NR_146461.1:n.33G>A

Select item 14657725439.

rs1465772543 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 2:87455504 (GRCh38)
2:87755023 (GRCh37)
Canonical SPDI:: NC_000002.12:87455503:A:C,NC_000002.12:87455503:A:G
Gene:: CYTOR (Varview), LINC01943 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.87455504A>C, NC_000002.12:g.87455504A>G, NC_000002.11:g.87755023A>C, NC_000002.11:g.87755023A>G, NR_024205.3:n.78A>C, NR_024205.3:n.78A>G, NR_024205.2:n.78A>C, NR_024205.2:n.78A>G, NR_024205.1:n.50A>C, NR_024205.1:n.50A>G, NM_052871.3:c.-190A>C, NM_052871.3:c.-190A>G, NR_024204.2:n.78A>C, NR_024204.2:n.78A>G, NR_024204.1:n.50A>C, NR_024204.1:n.50A>G, NR_024206.2:n.78A>C, NR_024206.2:n.78A>G, NR_024206.1:n.50A>C, NR_024206.1:n.50A>G, NM_052871.2:c.-190A>C, NM_052871.2:c.-190A>G, NR_146461.1:n.78A>C, NR_146461.1:n.78A>G

Select item 146489731910.

rs1464897319 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:87480324 (GRCh38)
2:87779843 (GRCh37)
Canonical SPDI:: NC_000002.12:87480323:C:T
Gene:: CYTOR (Varview), LINC01943 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.87480324C>T, NC_000002.11:g.87779843C>T, NR_024204.2:n.430C>T, NR_024204.1:n.402C>T, NR_146461.1:n.321C>T

Select item 146195745711.

rs1461957457 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:87480380 (GRCh38)
2:87779899 (GRCh37)
Canonical SPDI:: NC_000002.12:87480379:T:C
Gene:: CYTOR (Varview), LINC01943 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.87480380T>C, NC_000002.11:g.87779899T>C, NR_024204.2:n.486T>C, NR_024204.1:n.458T>C, NR_146461.1:n.377T>C

Select item 145968548412.

rs1459685484 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:87521368 (GRCh38)
2:87820887 (GRCh37)
Canonical SPDI:: NC_000002.12:87521367:A:G
Gene:: CYTOR (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.87521368A>G, NC_000002.11:g.87820887A>G, NR_024205.3:n.527A>G, NR_024205.2:n.527A>G, NR_024205.1:n.499A>G, NM_052871.3:c.114A>G, NR_024204.2:n.691A>G, NR_024204.1:n.663A>G, NR_024206.2:n.381A>G, NR_024206.1:n.353A>G, NM_052871.2:c.114A>G, NM_052871.1:c.114A>G, NR_146461.1:n.582A>G, NR_146460.1:n.410A>G

Select item 145706318213.

rs1457063182 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CT [Show Flanks]
Chromosome:: 2:87521295 (GRCh38)
2:87820815 (GRCh37)
Canonical SPDI:: NC_000002.12:87521295:CTCT:CTCTCT
Gene:: CYTOR (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTCTCT=0./0 (ALFA)
CT=0.000004/1 (TOPMED)
CT=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.87521296CT[3], NC_000002.11:g.87820815CT[3], NR_024205.3:n.455CT[3], NR_024205.2:n.455CT[3], NR_024205.1:n.427CT[3], NM_052871.3:c.44_45dup, NR_024204.2:n.619CT[3], NR_024204.1:n.591CT[3], NR_024206.2:n.309CT[3], NR_024206.1:n.281CT[3], NM_052871.2:c.44_45dup, NM_052871.1:c.44_45dup, NR_146461.1:n.510CT[3], NR_146460.1:n.338CT[3]

Select item 145700217814.

rs1457002178 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:87480335 (GRCh38)
2:87779854 (GRCh37)
Canonical SPDI:: NC_000002.12:87480334:G:A
Gene:: CYTOR (Varview), LINC01943 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.87480335G>A, NC_000002.11:g.87779854G>A, NR_024204.2:n.441G>A, NR_024204.1:n.413G>A, NR_146461.1:n.332G>A

Select item 145320803415.

rs1453208034 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:87480270 (GRCh38)
2:87779789 (GRCh37)
Canonical SPDI:: NC_000002.12:87480269:C:T
Gene:: CYTOR (Varview), LINC01943 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000224/1 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.87480270C>T, NC_000002.11:g.87779789C>T, NR_024204.2:n.376C>T, NR_024204.1:n.348C>T, NR_146461.1:n.267C>T

Select item 145305597316.

rs1453055973 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:87455626 (GRCh38)
2:87755145 (GRCh37)
Canonical SPDI:: NC_000002.12:87455625:G:A
Gene:: CYTOR (Varview), LINC01943 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000029/4 (GnomAD)
A=0.00003/8 (TOPMED)
HGVS:: NC_000002.12:g.87455626G>A, NC_000002.11:g.87755145G>A, NR_024205.3:n.200G>A, NR_024205.2:n.200G>A, NR_024205.1:n.172G>A, NM_052871.3:c.-68G>A, NR_024204.2:n.200G>A, NR_024204.1:n.172G>A, NR_024206.2:n.200G>A, NR_024206.1:n.172G>A, NM_052871.2:c.-68G>A, NR_146461.1:n.200G>A

Select item 145147837617.

rs1451478376 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 2:87455454 (GRCh38)
2:87754973 (GRCh37)
Canonical SPDI:: NC_000002.12:87455453:T:C,NC_000002.12:87455453:T:G
Gene:: CYTOR (Varview), LINC01943 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000008/2 (TOPMED)
G=0.00655/12 (Korea1K)
HGVS:: NC_000002.12:g.87455454T>C, NC_000002.12:g.87455454T>G, NC_000002.11:g.87754973T>C, NC_000002.11:g.87754973T>G, NR_024205.3:n.28T>C, NR_024205.3:n.28T>G, NR_024205.2:n.28T>C, NR_024205.2:n.28T>G, NR_024204.2:n.28T>C, NR_024204.2:n.28T>G, NR_024206.2:n.28T>C, NR_024206.2:n.28T>G, NM_052871.2:c.-240T>C, NM_052871.2:c.-240T>G, NR_146461.1:n.28T>C, NR_146461.1:n.28T>G

Select item 145072007018.

rs1450720070 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 2:87521342 (GRCh38)
2:87820861 (GRCh37)
Canonical SPDI:: NC_000002.12:87521341:T:G
Gene:: CYTOR (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.87521342T>G, NC_000002.11:g.87820861T>G, NR_024205.3:n.501T>G, NR_024205.2:n.501T>G, NR_024205.1:n.473T>G, NM_052871.3:c.88T>G, NR_024204.2:n.665T>G, NR_024204.1:n.637T>G, NR_024206.2:n.355T>G, NR_024206.1:n.327T>G, NM_052871.2:c.88T>G, NM_052871.1:c.88T>G, NR_146461.1:n.556T>G, NR_146460.1:n.384T>G

Select item 144688384919.

rs1446883849 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:87455575 (GRCh38)
2:87755094 (GRCh37)
Canonical SPDI:: NC_000002.12:87455574:C:T
Gene:: CYTOR (Varview), LINC01943 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.87455575C>T, NC_000002.11:g.87755094C>T, NR_024205.3:n.149C>T, NR_024205.2:n.149C>T, NR_024205.1:n.121C>T, NM_052871.3:c.-119C>T, NR_024204.2:n.149C>T, NR_024204.1:n.121C>T, NR_024206.2:n.149C>T, NR_024206.1:n.121C>T, NM_052871.2:c.-119C>T, NR_146461.1:n.149C>T

Select item 144559563720.

rs1445595637 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 2:87480314 (GRCh38)
2:87779833 (GRCh37)
Canonical SPDI:: NC_000002.12:87480313:C:G
Gene:: CYTOR (Varview), LINC01943 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000002.12:g.87480314C>G, NC_000002.11:g.87779833C>G, NR_024204.2:n.420C>G, NR_024204.1:n.392C>G, NR_146461.1:n.311C>G

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