SNP Links for Nucleotide (Select 1174099592) - SNP

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Links from Nucleotide

Items: 1 to 20 of 134

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Select item 14876743961.

rs1487674396 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 20:22683786 (GRCh38)
20:22664424 (GRCh37)
Canonical SPDI:: NC_000020.11:22683785:G:A,NC_000020.11:22683785:G:T
Gene:: LINC01747 (Varview), LOC124904963 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000029/4 (GnomAD)
A=0.000071/1 (TOMMO)
HGVS:: NC_000020.11:g.22683786G>A, NC_000020.11:g.22683786G>T, NC_000020.10:g.22664424G>A, NC_000020.10:g.22664424G>T, NR_146528.1:n.441C>T, NR_146528.1:n.441C>A

Select item 14833015792.

rs1483301579 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 20:22683881 (GRCh38)
20:22664519 (GRCh37)
Canonical SPDI:: NC_000020.11:22683880:G:A,NC_000020.11:22683880:G:T
Gene:: LINC01747 (Varview), LOC124904963 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
A=0.00005/7 (GnomAD)
G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000020.11:g.22683881G>A, NC_000020.11:g.22683881G>T, NC_000020.10:g.22664519G>A, NC_000020.10:g.22664519G>T, NR_146528.1:n.346C>T, NR_146528.1:n.346C>A

Select item 14705209023.

rs1470520902 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 20:22683679 (GRCh38)
20:22664317 (GRCh37)
Canonical SPDI:: NC_000020.11:22683678:C:G,NC_000020.11:22683678:C:T
Gene:: LINC01747 (Varview), LOC124904963 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000020.11:g.22683679C>G, NC_000020.11:g.22683679C>T, NC_000020.10:g.22664317C>G, NC_000020.10:g.22664317C>T, NR_146528.1:n.548G>C, NR_146528.1:n.548G>A

Select item 14695458674.

rs1469545867 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:22685126 (GRCh38)
20:22665764 (GRCh37)
Canonical SPDI:: NC_000020.11:22685125:C:T
Gene:: LINC01747 (Varview), LOC124904963 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000020.11:g.22685126C>T, NC_000020.10:g.22665764C>T, NR_146527.1:n.219G>A, NR_146528.1:n.219G>A

Select item 14664730315.

rs1466473031 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:22685147 (GRCh38)
20:22665785 (GRCh37)
Canonical SPDI:: NC_000020.11:22685146:T:C
Gene:: LINC01747 (Varview), LOC124904963 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.22685147T>C, NC_000020.10:g.22665785T>C, NR_146527.1:n.198A>G, NR_146528.1:n.198A>G

Select item 14593616856.

rs1459361685 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 20:22685122 (GRCh38)
20:22665760 (GRCh37)
Canonical SPDI:: NC_000020.11:22685121:G:T
Gene:: LINC01747 (Varview), LOC124904963 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.22685122G>T, NC_000020.10:g.22665760G>T, NR_146527.1:n.223C>A, NR_146528.1:n.223C>A

Select item 14579619147.

rs1457961914 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:22683749 (GRCh38)
20:22664387 (GRCh37)
Canonical SPDI:: NC_000020.11:22683748:C:T
Gene:: LINC01747 (Varview), LOC124904963 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000053/14 (TOPMED)
HGVS:: NC_000020.11:g.22683749C>T, NC_000020.10:g.22664387C>T, NR_146528.1:n.478G>A

Select item 14571780298.

rs1457178029 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 20:22683740 (GRCh38)
20:22664378 (GRCh37)
Canonical SPDI:: NC_000020.11:22683739:G:
Gene:: LINC01747 (Varview), LOC124904963 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.22683740del, NC_000020.10:g.22664378del, NR_146528.1:n.487del

Select item 14528978689.

rs1452897868 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 20:22684837 (GRCh38)
20:22665475 (GRCh37)
Canonical SPDI:: NC_000020.11:22684836:CC:C
Gene:: LINC01747 (Varview), LOC124904963 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0.000071/1 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000020.11:g.22684838del, NC_000020.10:g.22665476del, NR_146527.1:n.297del, NR_146528.1:n.241del

Select item 145199019110.

rs1451990191 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:22685139 (GRCh38)
20:22665777 (GRCh37)
Canonical SPDI:: NC_000020.11:22685138:A:G
Gene:: LINC01747 (Varview), LOC124904963 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.22685139A>G, NC_000020.10:g.22665777A>G, NR_146527.1:n.206T>C, NR_146528.1:n.206T>C

Select item 145153217611.

rs1451532176 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:22685241 (GRCh38)
20:22665879 (GRCh37)
Canonical SPDI:: NC_000020.11:22685240:T:C
Gene:: LINC01747 (Varview), LOC124904963 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000020.11:g.22685241T>C, NC_000020.10:g.22665879T>C, NR_146527.1:n.104A>G, NR_146528.1:n.104A>G

Select item 144536952212.

rs1445369522 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:22685256 (GRCh38)
20:22665894 (GRCh37)
Canonical SPDI:: NC_000020.11:22685255:C:T
Gene:: LINC01747 (Varview), LOC124904963 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000020.11:g.22685256C>T, NC_000020.10:g.22665894C>T, NR_146527.1:n.89G>A, NR_146528.1:n.89G>A

Select item 143825297113.

rs1438252971 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 20:22685193 (GRCh38)
20:22665831 (GRCh37)
Canonical SPDI:: NC_000020.11:22685192:C:G
Gene:: LINC01747 (Varview), LOC124904963 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.22685193C>G, NC_000020.10:g.22665831C>G, NR_146527.1:n.152G>C, NR_146528.1:n.152G>C

Select item 143607958114.

rs1436079581 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 20:22684792 (GRCh38)
20:22665430 (GRCh37)
Canonical SPDI:: NC_000020.11:22684791:G:A,NC_000020.11:22684791:G:T
Gene:: LINC01747 (Varview), LOC124904963 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.22684792G>A, NC_000020.11:g.22684792G>T, NC_000020.10:g.22665430G>A, NC_000020.10:g.22665430G>T, NR_146527.1:n.342C>T, NR_146527.1:n.342C>A, NR_146528.1:n.286C>T, NR_146528.1:n.286C>A

Select item 142934568915.

rs1429345689 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 20:22685287 (GRCh38)
20:22665925 (GRCh37)
Canonical SPDI:: NC_000020.11:22685286:T:G
Gene:: LINC01747 (Varview), LOC124904963 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000342/1 (KOREAN)
G=0.001092/2 (Korea1K)
HGVS:: NC_000020.11:g.22685287T>G, NC_000020.10:g.22665925T>G, NR_146527.1:n.58A>C, NR_146528.1:n.58A>C

Select item 141353431916.

rs1413534319 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 20:22685123 (GRCh38)
20:22665761 (GRCh37)
Canonical SPDI:: NC_000020.11:22685122:C:A
Gene:: LINC01747 (Varview), LOC124904963 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.22685123C>A, NC_000020.10:g.22665761C>A, NR_146527.1:n.222G>T, NR_146528.1:n.222G>T

Select item 141185061717.

rs1411850617 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 20:22683671 (GRCh38)
20:22664309 (GRCh37)
Canonical SPDI:: NC_000020.11:22683670:G:C
Gene:: LINC01747 (Varview), LOC124904963 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.22683671G>C, NC_000020.10:g.22664309G>C, NR_146528.1:n.556C>G

Select item 139327428218.

rs1393274282 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTTTAGGAGGCAG>- [Show Flanks]
Chromosome:: 20:22683777 (GRCh38)
20:22664415 (GRCh37)
Canonical SPDI:: NC_000020.11:22683769:GAGGCAGGTTTAGGAGGCAG:GAGGCAG
Gene:: LINC01747 (Varview), LOC124904963 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: GAGGCAG=0./0 (ALFA)
HGVS:: NC_000020.11:g.22683777_22683789del, NC_000020.10:g.22664415_22664427del, NR_146528.1:n.445_457del

Select item 139241499519.

rs1392414995 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:22684839 (GRCh38)
20:22665477 (GRCh37)
Canonical SPDI:: NC_000020.11:22684838:A:G
Gene:: LINC01747 (Varview), LOC124904963 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.22684839A>G, NC_000020.10:g.22665477A>G, NR_146527.1:n.295T>C, NR_146528.1:n.239T>C

Select item 138825332720.

rs1388253327 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 20:22684795 (GRCh38)
20:22665433 (GRCh37)
Canonical SPDI:: NC_000020.11:22684794:C:A
Gene:: LINC01747 (Varview), LOC124904963 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.22684795C>A, NC_000020.10:g.22665433C>A, NR_146527.1:n.339G>T, NR_146528.1:n.283G>T