SNP Links for Nucleotide (Select 1178431771) - SNP

Links from Nucleotide

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Select item 14903729221.

rs1490372922 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 18:13240200 (GRCh38)
18:13240199 (GRCh37)
Canonical SPDI:: NC_000018.10:13240199:A:C
Gene:: LDLRAD4 (Varview), C18orf15 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.13240200A>C, NC_000018.9:g.13240199A>C, XM_024451256.2:c.-2694A>C, XM_024451256.1:c.-2694A>C, NR_146617.1:n.658A>C, NM_152469.1:c.23A>C

Select item 14903578762.

rs1490357876 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 18:13241033 (GRCh38)
18:13241032 (GRCh37)
Canonical SPDI:: NC_000018.10:13241032:G:A
Gene:: LDLRAD4 (Varview), C18orf15 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000018.10:g.13241033G>A, NC_000018.9:g.13241032G>A, XM_024451256.2:c.-1861G>A, XM_024451256.1:c.-1861G>A, NR_146617.1:n.1491G>A, NM_152469.1:c.*311G>A

Select item 14889462703.

rs1488946270 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 18:13241904 (GRCh38)
18:13241903 (GRCh37)
Canonical SPDI:: NC_000018.10:13241903:C:T
Gene:: LDLRAD4 (Varview), C18orf15 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.13241904C>T, NC_000018.9:g.13241903C>T, XM_024451256.2:c.-990C>T, XM_024451256.1:c.-990C>T, NR_146617.1:n.2362C>T, NM_152469.1:c.*1182C>T

Select item 14885307334.

rs1488530733 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 18:13241187 (GRCh38)
18:13241186 (GRCh37)
Canonical SPDI:: NC_000018.10:13241186:G:A,NC_000018.10:13241186:G:T
Gene:: LDLRAD4 (Varview), C18orf15 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.00047/3 (1000Genomes)
HGVS:: NC_000018.10:g.13241187G>A, NC_000018.10:g.13241187G>T, NC_000018.9:g.13241186G>A, NC_000018.9:g.13241186G>T, XM_024451256.2:c.-1707G>A, XM_024451256.2:c.-1707G>T, XM_024451256.1:c.-1707G>A, XM_024451256.1:c.-1707G>T, NR_146617.1:n.1645G>A, NR_146617.1:n.1645G>T, NM_152469.1:c.*465G>A, NM_152469.1:c.*465G>T

Select item 14882654975.

rs1488265497 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGAGACCTTCAGTAGG>- [Show Flanks]
Chromosome:: 18:13239616 (GRCh38)
18:13239615 (GRCh37)
Canonical SPDI:: NC_000018.10:13239613:GGAGAGACCTTCAGTAGG:GG
Gene:: LDLRAD4 (Varview), C18orf15 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.13239616_13239631del, NC_000018.9:g.13239615_13239630del, XM_024451256.2:c.-3278_-3263del, XM_024451256.1:c.-3278_-3263del, NR_146617.1:n.74_89del, NM_152469.1:c.-562_-547del

Select item 14874782726.

rs1487478272 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 18:13239679 (GRCh38)
18:13239678 (GRCh37)
Canonical SPDI:: NC_000018.10:13239678:G:A
Gene:: LDLRAD4 (Varview), C18orf15 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000018.10:g.13239679G>A, NC_000018.9:g.13239678G>A, XM_024451256.2:c.-3215G>A, XM_024451256.1:c.-3215G>A, NR_146617.1:n.137G>A, NM_152469.1:c.-499G>A

Select item 14823657997.

rs1482365799 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 18:13240210 (GRCh38)
18:13240209 (GRCh37)
Canonical SPDI:: NC_000018.10:13240209:C:T
Gene:: LDLRAD4 (Varview), C18orf15 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.13240210C>T, NC_000018.9:g.13240209C>T, XM_024451256.2:c.-2684C>T, XM_024451256.1:c.-2684C>T, NR_146617.1:n.668C>T, NM_152469.1:c.33C>T

Select item 14805448188.

rs1480544818 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 18:13240324 (GRCh38)
18:13240323 (GRCh37)
Canonical SPDI:: NC_000018.10:13240323:T:A,NC_000018.10:13240323:T:C
Gene:: LDLRAD4 (Varview), C18orf15 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
C=0.000342/1 (KOREAN)
HGVS:: NC_000018.10:g.13240324T>A, NC_000018.10:g.13240324T>C, NC_000018.9:g.13240323T>A, NC_000018.9:g.13240323T>C, XM_024451256.2:c.-2570T>A, XM_024451256.2:c.-2570T>C, XM_024451256.1:c.-2570T>A, XM_024451256.1:c.-2570T>C, NR_146617.1:n.782T>A, NR_146617.1:n.782T>C, NM_152469.1:c.147T>A, NM_152469.1:c.147T>C

Select item 14785796759.

rs1478579675 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 18:13241022 (GRCh38)
18:13241021 (GRCh37)
Canonical SPDI:: NC_000018.10:13241021:C:T
Gene:: LDLRAD4 (Varview), C18orf15 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000019/5 (TOPMED)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000018.10:g.13241022C>T, NC_000018.9:g.13241021C>T, XM_024451256.2:c.-1872C>T, XM_024451256.1:c.-1872C>T, NR_146617.1:n.1480C>T, NM_152469.1:c.*300C>T

Select item 147768736710.

rs1477687367 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 18:13240283 (GRCh38)
18:13240282 (GRCh37)
Canonical SPDI:: NC_000018.10:13240282:G:A
Gene:: LDLRAD4 (Varview), C18orf15 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.13240283G>A, NC_000018.9:g.13240282G>A, XM_024451256.2:c.-2611G>A, XM_024451256.1:c.-2611G>A, NR_146617.1:n.741G>A, NM_152469.1:c.106G>A

Select item 147601800811.

rs1476018008 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 18:13239687 (GRCh38)
18:13239686 (GRCh37)
Canonical SPDI:: NC_000018.10:13239686:C:T
Gene:: LDLRAD4 (Varview), C18orf15 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.13239687C>T, NC_000018.9:g.13239686C>T, XM_024451256.2:c.-3207C>T, XM_024451256.1:c.-3207C>T, NR_146617.1:n.145C>T, NM_152469.1:c.-491C>T

Select item 147449930812.

rs1474499308 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 18:13241011 (GRCh38)
18:13241010 (GRCh37)
Canonical SPDI:: NC_000018.10:13241010:C:T
Gene:: LDLRAD4 (Varview), C18orf15 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000018.10:g.13241011C>T, NC_000018.9:g.13241010C>T, XM_024451256.2:c.-1883C>T, XM_024451256.1:c.-1883C>T, NR_146617.1:n.1469C>T, NM_152469.1:c.*289C>T

Select item 147441746413.

rs1474417464 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 18:13241789 (GRCh38)
18:13241788 (GRCh37)
Canonical SPDI:: NC_000018.10:13241788:A:G,NC_000018.10:13241788:A:T
Gene:: LDLRAD4 (Varview), C18orf15 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00034/1 (KOREAN)
T=0.00042/7 (TOMMO)
T=0.00109/2 (Korea1K)
HGVS:: NC_000018.10:g.13241789A>G, NC_000018.10:g.13241789A>T, NC_000018.9:g.13241788A>G, NC_000018.9:g.13241788A>T, XM_024451256.2:c.-1105A>G, XM_024451256.2:c.-1105A>T, XM_024451256.1:c.-1105A>G, XM_024451256.1:c.-1105A>T, NR_146617.1:n.2247A>G, NR_146617.1:n.2247A>T, NM_152469.1:c.*1067A>G, NM_152469.1:c.*1067A>T

Select item 147172653814.

rs1471726538 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 18:13239844 (GRCh38)
18:13239843 (GRCh37)
Canonical SPDI:: NC_000018.10:13239843:T:C,NC_000018.10:13239843:T:G
Gene:: LDLRAD4 (Varview), C18orf15 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
G=0.000142/4 (TOMMO)
HGVS:: NC_000018.10:g.13239844T>C, NC_000018.10:g.13239844T>G, NC_000018.9:g.13239843T>C, NC_000018.9:g.13239843T>G, XM_024451256.2:c.-3050T>C, XM_024451256.2:c.-3050T>G, XM_024451256.1:c.-3050T>C, XM_024451256.1:c.-3050T>G, NR_146617.1:n.302T>C, NR_146617.1:n.302T>G, NM_152469.1:c.-334T>C, NM_152469.1:c.-334T>G

Select item 146694513815.

rs1466945138 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 18:13241115 (GRCh38)
18:13241115 (GRCh37)
Canonical SPDI:: NC_000018.10:13241115:GGGG:GGGGG
Gene:: LDLRAD4 (Varview), C18orf15 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,5_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: GGGGG=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000018.10:g.13241119dup, NC_000018.9:g.13241118dup, XM_024451256.2:c.-1775dup, XM_024451256.1:c.-1775dup, NR_146617.1:n.1577dup, NM_152469.1:c.*397dup

Select item 146619017416.

rs1466190174 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 18:13241834 (GRCh38)
18:13241833 (GRCh37)
Canonical SPDI:: NC_000018.10:13241833:G:A
Gene:: LDLRAD4 (Varview), C18orf15 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,5_prime_UTR_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.13241834G>A, NC_000018.9:g.13241833G>A, XM_024451256.2:c.-1060G>A, XM_024451256.1:c.-1060G>A, NR_146617.1:n.2292G>A, NM_152469.1:c.*1112G>A

Select item 146608024017.

rs1466080240 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 18:13240108 (GRCh38)
18:13240107 (GRCh37)
Canonical SPDI:: NC_000018.10:13240107:T:C,NC_000018.10:13240107:T:G
Gene:: LDLRAD4 (Varview), C18orf15 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,5_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000021/3 (GnomAD)
C=0.000142/2 (TOMMO)
HGVS:: NC_000018.10:g.13240108T>C, NC_000018.10:g.13240108T>G, NC_000018.9:g.13240107T>C, NC_000018.9:g.13240107T>G, XM_024451256.2:c.-2786T>C, XM_024451256.2:c.-2786T>G, XM_024451256.1:c.-2786T>C, XM_024451256.1:c.-2786T>G, NR_146617.1:n.566T>C, NR_146617.1:n.566T>G, NM_152469.1:c.-70T>C, NM_152469.1:c.-70T>G

Select item 146586737018.

rs1465867370 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 18:13239827 (GRCh38)
18:13239826 (GRCh37)
Canonical SPDI:: NC_000018.10:13239826:G:A,NC_000018.10:13239826:G:T
Gene:: LDLRAD4 (Varview), C18orf15 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,5_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000018.10:g.13239827G>A, NC_000018.10:g.13239827G>T, NC_000018.9:g.13239826G>A, NC_000018.9:g.13239826G>T, XM_024451256.2:c.-3067G>A, XM_024451256.2:c.-3067G>T, XM_024451256.1:c.-3067G>A, XM_024451256.1:c.-3067G>T, NR_146617.1:n.285G>A, NR_146617.1:n.285G>T, NM_152469.1:c.-351G>A, NM_152469.1:c.-351G>T

Select item 146065750419.

rs1460657504 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 18:13240817 (GRCh38)
18:13240816 (GRCh37)
Canonical SPDI:: NC_000018.10:13240816:T:G
Gene:: LDLRAD4 (Varview), C18orf15 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,5_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000018.10:g.13240817T>G, NC_000018.9:g.13240816T>G, XM_024451256.2:c.-2077T>G, XM_024451256.1:c.-2077T>G, NR_146617.1:n.1275T>G, NM_152469.1:c.*94T>G

Select item 146030021820.

rs1460300218 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 18:13241609 (GRCh38)
18:13241608 (GRCh37)
Canonical SPDI:: NC_000018.10:13241608:C:A
Gene:: LDLRAD4 (Varview), C18orf15 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,5_prime_UTR_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000084/1 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000018.10:g.13241609C>A, NC_000018.9:g.13241608C>A, XM_024451256.2:c.-1285C>A, XM_024451256.1:c.-1285C>A, NR_146617.1:n.2067C>A, NM_152469.1:c.*887C>A

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