SNP Links for Nucleotide (Select 1182953877) - SNP

Links from Nucleotide

Items: 1 to 20 of 203

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Select item 14913969151.

rs1491396915 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 9:87553495 (GRCh38)
9:90168411 (GRCh37)
Canonical SPDI:: NC_000009.12:87553495:C:CC
Gene:: DAPK1 (Varview), DAPK1-IT1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
C=0.00001/1 (GnomAD)
HGVS:: NC_000009.12:g.87553496dup, NC_000009.11:g.90168411dup, NG_029883.1:g.60656dup, NR_146781.1:n.43dup

Select item 14913015532.

rs1491301553 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 9:87553496 (GRCh38)
9:90168411 (GRCh37)
Canonical SPDI:: NC_000009.12:87553494:TCT:T
Gene:: DAPK1 (Varview), DAPK1-IT1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.00008/1 (ALFA)
HGVS:: NC_000009.12:g.87553496_87553497del, NC_000009.11:g.90168411_90168412del, NG_029883.1:g.60656_60657del, NR_146781.1:n.43_44del

Select item 14854705763.

rs1485470576 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:87553504 (GRCh38)
9:90168419 (GRCh37)
Canonical SPDI:: NC_000009.12:87553503:T:C
Gene:: DAPK1 (Varview), DAPK1-IT1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000009.12:g.87553504T>C, NC_000009.11:g.90168419T>C, NG_029883.1:g.60664T>C, NR_146781.1:n.51T>C

Select item 14836778604.

rs1483677860 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:87553559 (GRCh38)
9:90168474 (GRCh37)
Canonical SPDI:: NC_000009.12:87553558:G:A
Gene:: DAPK1 (Varview), DAPK1-IT1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.87553559G>A, NC_000009.11:g.90168474G>A, NG_029883.1:g.60719G>A, NR_146781.1:n.106G>A

Select item 14830228925.

rs1483022892 has merged into rs10709417 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA [Show Flanks]
Chromosome:: 9:87554458 (GRCh38)
9:90169373 (GRCh37)
Canonical SPDI:: NC_000009.12:87554446:AAAAAAAAAAAAA:AAAAAAAAAAA,NC_000009.12:87554446:AAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000009.12:87554446:AAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000009.12:87554446:AAAAAAAAAAAAA:AAAAAAAAAAAAAAA
Gene:: DAPK1 (Varview), DAPK1-IT1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAA=0.000466/7 (ALFA)
-=0.111864/66 (NorthernSweden)
-=0.15/6 (GENOME_DK)
-=0.208712/55244 (TOPMED)
HGVS:: NC_000009.12:g.87554458_87554459del, NC_000009.12:g.87554459del, NC_000009.12:g.87554459dup, NC_000009.12:g.87554458_87554459dup, NC_000009.11:g.90169373_90169374del, NC_000009.11:g.90169374del, NC_000009.11:g.90169374dup, NC_000009.11:g.90169373_90169374dup, NG_029883.1:g.61618_61619del, NG_029883.1:g.61619del, NG_029883.1:g.61619dup, NG_029883.1:g.61618_61619dup, NR_146781.1:n.701_702del, NR_146781.1:n.702del, NR_146781.1:n.702dup, NR_146781.1:n.701_702dup

Select item 14789455096.

rs1478945509 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 9:87554356 (GRCh38)
9:90169271 (GRCh37)
Canonical SPDI:: NC_000009.12:87554355:T:C,NC_000009.12:87554355:T:G
Gene:: DAPK1 (Varview), DAPK1-IT1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.87554356T>C, NC_000009.12:g.87554356T>G, NC_000009.11:g.90169271T>C, NC_000009.11:g.90169271T>G, NG_029883.1:g.61516T>C, NG_029883.1:g.61516T>G, NR_146781.1:n.599T>C, NR_146781.1:n.599T>G

Select item 14775092907.

rs1477509290 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAT>- [Show Flanks]
Chromosome:: 9:87554434 (GRCh38)
9:90169349 (GRCh37)
Canonical SPDI:: NC_000009.12:87554428:AAAATAAAAT:AAAAT
Gene:: DAPK1 (Varview), DAPK1-IT1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAATAAAAT=0./0 (ALFA)
-=0.000042/11 (TOPMED)
-=0.000076/10 (GnomAD)
HGVS:: NC_000009.12:g.87554429AAAAT[1], NC_000009.11:g.90169344AAAAT[1], NG_029883.1:g.61589AAAAT[1], NR_146781.1:n.672AAAAT[1]

Select item 14747521088.

rs1474752108 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 9:87553553 (GRCh38)
9:90168468 (GRCh37)
Canonical SPDI:: NC_000009.12:87553552:T:G
Gene:: DAPK1 (Varview), DAPK1-IT1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000009.12:g.87553553T>G, NC_000009.11:g.90168468T>G, NG_029883.1:g.60713T>G, NR_146781.1:n.100T>G

Select item 14685032259.

rs1468503225 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 9:87553500 (GRCh38)
9:90168416 (GRCh37)
Canonical SPDI:: NC_000009.12:87553500::C
Gene:: DAPK1 (Varview), DAPK1-IT1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.00042/5 (ALFA)
HGVS:: NC_000009.12:g.87553500_87553501insC, NC_000009.11:g.90168415_90168416insC, NG_029883.1:g.60660_60661insC, NR_146781.1:n.47_48insC

Select item 146717243910.

rs1467172439 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 9:87553535 (GRCh38)
9:90168450 (GRCh37)
Canonical SPDI:: NC_000009.12:87553534:G:A,NC_000009.12:87553534:G:T
Gene:: DAPK1 (Varview), DAPK1-IT1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (TOPMED)
T=0.000066/8 (GnomAD)
T=0.000071/2 (TOMMO)
HGVS:: NC_000009.12:g.87553535G>A, NC_000009.12:g.87553535G>T, NC_000009.11:g.90168450G>A, NC_000009.11:g.90168450G>T, NG_029883.1:g.60695G>A, NG_029883.1:g.60695G>T, NR_146781.1:n.82G>A, NR_146781.1:n.82G>T

Select item 146525564511.

rs1465255645 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 9:87554128 (GRCh38)
9:90169043 (GRCh37)
Canonical SPDI:: NC_000009.12:87554127:C:G,NC_000009.12:87554127:C:T
Gene:: DAPK1 (Varview), DAPK1-IT1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.87554128C>G, NC_000009.12:g.87554128C>T, NC_000009.11:g.90169043C>G, NC_000009.11:g.90169043C>T, NG_029883.1:g.61288C>G, NG_029883.1:g.61288C>T, NR_146781.1:n.371C>G, NR_146781.1:n.371C>T

Select item 146450627012.

rs1464506270 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 9:87553532 (GRCh38)
9:90168447 (GRCh37)
Canonical SPDI:: NC_000009.12:87553531:G:C,NC_000009.12:87553531:G:T
Gene:: DAPK1 (Varview), DAPK1-IT1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
C=0.000078/10 (GnomAD)
HGVS:: NC_000009.12:g.87553532G>C, NC_000009.12:g.87553532G>T, NC_000009.11:g.90168447G>C, NC_000009.11:g.90168447G>T, NG_029883.1:g.60692G>C, NG_029883.1:g.60692G>T, NR_146781.1:n.79G>C, NR_146781.1:n.79G>T

Select item 145309280713.

rs1453092807 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 9:87554232 (GRCh38)
9:90169147 (GRCh37)
Canonical SPDI:: NC_000009.12:87554231:A:C,NC_000009.12:87554231:A:G
Gene:: DAPK1 (Varview), DAPK1-IT1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.87554232A>C, NC_000009.12:g.87554232A>G, NC_000009.11:g.90169147A>C, NC_000009.11:g.90169147A>G, NG_029883.1:g.61392A>C, NG_029883.1:g.61392A>G, NR_146781.1:n.475A>C, NR_146781.1:n.475A>G

Select item 144719033314.

rs1447190333 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:87554017 (GRCh38)
9:90168932 (GRCh37)
Canonical SPDI:: NC_000009.12:87554016:C:T
Gene:: DAPK1 (Varview), DAPK1-IT1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: T=0./0 (GnomAD)
HGVS:: NC_000009.12:g.87554017C>T, NC_000009.11:g.90168932C>T, NG_029883.1:g.61177C>T, NR_146781.1:n.260C>T

Select item 144680400715.

rs1446804007 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:87553547 (GRCh38)
9:90168462 (GRCh37)
Canonical SPDI:: NC_000009.12:87553546:G:A
Gene:: DAPK1 (Varview), DAPK1-IT1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.87553547G>A, NC_000009.11:g.90168462G>A, NG_029883.1:g.60707G>A, NR_146781.1:n.94G>A

Select item 144611639316.

rs1446116393 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:87554039 (GRCh38)
9:90168954 (GRCh37)
Canonical SPDI:: NC_000009.12:87554038:T:C
Gene:: DAPK1 (Varview), DAPK1-IT1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000009.12:g.87554039T>C, NC_000009.11:g.90168954T>C, NG_029883.1:g.61199T>C, NR_146781.1:n.282T>C

Select item 144590120117.

rs1445901201 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:87554122 (GRCh38)
9:90169037 (GRCh37)
Canonical SPDI:: NC_000009.12:87554121:A:C
Gene:: DAPK1 (Varview), DAPK1-IT1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.87554122A>C, NC_000009.11:g.90169037A>C, NG_029883.1:g.61282A>C, NR_146781.1:n.365A>C

Select item 144526521618.

rs1445265216 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 9:87553476 (GRCh38)
9:90168391 (GRCh37)
Canonical SPDI:: NC_000009.12:87553475:TTTT:TTT
Gene:: DAPK1 (Varview), DAPK1-IT1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTT=0./0 (ALFA)
-=0.000009/1 (GnomAD)
-=0.000034/9 (TOPMED)
-=0.000142/2 (TOMMO)
HGVS:: NC_000009.12:g.87553479del, NC_000009.11:g.90168394del, NG_029883.1:g.60639del, NR_146781.1:n.26del

Select item 144347123019.

rs1443471230 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:87554367 (GRCh38)
9:90169282 (GRCh37)
Canonical SPDI:: NC_000009.12:87554366:G:A,NC_000009.12:87554366:G:C
Gene:: DAPK1 (Varview), DAPK1-IT1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000009.12:g.87554367G>A, NC_000009.12:g.87554367G>C, NC_000009.11:g.90169282G>A, NC_000009.11:g.90169282G>C, NG_029883.1:g.61527G>A, NG_029883.1:g.61527G>C, NR_146781.1:n.610G>A, NR_146781.1:n.610G>C

Select item 144047357620.

rs1440473576 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 9:87553512 (GRCh38)
9:90168427 (GRCh37)
Canonical SPDI:: NC_000009.12:87553511:T:G
Gene:: DAPK1 (Varview), DAPK1-IT1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00011/15 (GnomAD)
HGVS:: NC_000009.12:g.87553512T>G, NC_000009.11:g.90168427T>G, NG_029883.1:g.60672T>G, NR_146781.1:n.59T>G

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