SNP Links for Nucleotide (Select 1209857177) - SNP

Links from Nucleotide

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Select item 14908818621.

rs1490881862 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:584470 (GRCh38)
4:578259 (GRCh37)
Canonical SPDI:: NC_000004.12:584469:T:C
Gene:: LOC105374338 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000004.12:g.584470T>C, NC_000004.11:g.578259T>C, NR_148199.1:n.1458T>C

Select item 14906628472.

rs1490662847 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 4:577715 (GRCh38)
4:571504 (GRCh37)
Canonical SPDI:: NC_000004.12:577714:C:T
Gene:: LOC105374338 (Varview), TMEM271 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.577715C>T, NC_000004.11:g.571504C>T, NR_148199.1:n.548C>T

Select item 14895320903.

rs1489532090 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:577208 (GRCh38)
4:570997 (GRCh37)
Canonical SPDI:: NC_000004.12:577207:G:A
Gene:: LOC105374338 (Varview), TMEM271 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000004.12:g.577208G>A, NC_000004.11:g.570997G>A, NR_148199.1:n.41G>A

Select item 14891866184.

rs1489186618 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 4:577989 (GRCh38)
4:571778 (GRCh37)
Canonical SPDI:: NC_000004.12:577988:T:A,NC_000004.12:577988:T:C
Gene:: LOC105374338 (Varview), TMEM271 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
C=0.00004/1 (TOMMO)
HGVS:: NC_000004.12:g.577989T>A, NC_000004.12:g.577989T>C, NC_000004.11:g.571778T>A, NC_000004.11:g.571778T>C, NR_148199.1:n.822T>A, NR_148199.1:n.822T>C

Select item 14881360615.

rs1488136061 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 4:577702 (GRCh38)
4:571491 (GRCh37)
Canonical SPDI:: NC_000004.12:577701:C:A,NC_000004.12:577701:C:T
Gene:: LOC105374338 (Varview), TMEM271 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
T=0.000637/11 (TOMMO)
HGVS:: NC_000004.12:g.577702C>A, NC_000004.12:g.577702C>T, NC_000004.11:g.571491C>A, NC_000004.11:g.571491C>T, NR_148199.1:n.535C>A, NR_148199.1:n.535C>T

Select item 14878938426.

rs1487893842 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 4:578122 (GRCh38)
4:571911 (GRCh37)
Canonical SPDI:: NC_000004.12:578121:C:T
Gene:: LOC105374338 (Varview), TMEM271 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000462/7 (ALFA)
T=0.000086/12 (GnomAD)
T=0.001339/6 (Estonian)
T=0.005/3 (NorthernSweden)
HGVS:: NC_000004.12:g.578122C>T, NC_000004.11:g.571911C>T, NR_148199.1:n.955C>T

Select item 14872790957.

rs1487279095 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:578103 (GRCh38)
4:571892 (GRCh37)
Canonical SPDI:: NC_000004.12:578102:G:A
Gene:: LOC105374338 (Varview), TMEM271 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.578103G>A, NC_000004.11:g.571892G>A, NR_148199.1:n.936G>A

Select item 14862503398.

rs1486250339 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:584309 (GRCh38)
4:578098 (GRCh37)
Canonical SPDI:: NC_000004.12:584308:G:A
Gene:: LOC105374338 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.584309G>A, NC_000004.11:g.578098G>A, NR_148199.1:n.1297G>A

Select item 14814717559.

rs1481471755 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 4:584587 (GRCh38)
4:578376 (GRCh37)
Canonical SPDI:: NC_000004.12:584586:TT:T
Gene:: LOC105374338 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.584588del, NC_000004.11:g.578377del, NR_148199.1:n.1576del

Select item 148096804010.

rs1480968040 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 4:577480 (GRCh38)
4:571269 (GRCh37)
Canonical SPDI:: NC_000004.12:577479:G:A,NC_000004.12:577479:G:C
Gene:: LOC105374338 (Varview), TMEM271 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000004.12:g.577480G>A, NC_000004.12:g.577480G>C, NC_000004.11:g.571269G>A, NC_000004.11:g.571269G>C, NR_148199.1:n.313G>A, NR_148199.1:n.313G>C

Select item 147865461511.

rs1478654615 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:578762 (GRCh38)
4:572551 (GRCh37)
Canonical SPDI:: NC_000004.12:578761:A:G
Gene:: LOC105374338 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.578762A>G, NC_000004.11:g.572551A>G, NR_148199.1:n.1195A>G

Select item 147864743012.

rs1478647430 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 4:578095 (GRCh38)
4:571884 (GRCh37)
Canonical SPDI:: NC_000004.12:578094:T:G
Gene:: LOC105374338 (Varview), TMEM271 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.578095T>G, NC_000004.11:g.571884T>G, NR_148199.1:n.928T>G

Select item 147745817813.

rs1477458178 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 4:577869 (GRCh38)
4:571658 (GRCh37)
Canonical SPDI:: NC_000004.12:577868:G:A,NC_000004.12:577868:G:T
Gene:: LOC105374338 (Varview), TMEM271 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000066/1 (ALFA)
T=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000004.12:g.577869G>A, NC_000004.12:g.577869G>T, NC_000004.11:g.571658G>A, NC_000004.11:g.571658G>T, NR_148199.1:n.702G>A, NR_148199.1:n.702G>T

Select item 147713072014.

rs1477130720 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 4:584735 (GRCh38)
4:578524 (GRCh37)
Canonical SPDI:: NC_000004.12:584734:G:A,NC_000004.12:584734:G:T
Gene:: LOC105374338 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000004.12:g.584735G>A, NC_000004.12:g.584735G>T, NC_000004.11:g.578524G>A, NC_000004.11:g.578524G>T, NR_148199.1:n.1723G>A, NR_148199.1:n.1723G>T

Select item 147187649215.

rs1471876492 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 4:577694 (GRCh38)
4:571483 (GRCh37)
Canonical SPDI:: NC_000004.12:577693:A:C
Gene:: LOC105374338 (Varview), TMEM271 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.577694A>C, NC_000004.11:g.571483A>C, NR_148199.1:n.527A>C

Select item 147162062716.

rs1471620627 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:584782 (GRCh38)
4:578571 (GRCh37)
Canonical SPDI:: NC_000004.12:584781:G:A
Gene:: LOC105374338 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.584782G>A, NC_000004.11:g.578571G>A, NR_148199.1:n.1770G>A

Select item 147145842617.

rs1471458426 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 4:577877 (GRCh38)
4:571666 (GRCh37)
Canonical SPDI:: NC_000004.12:577876:C:G,NC_000004.12:577876:C:T
Gene:: LOC105374338 (Varview), TMEM271 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000004.12:g.577877C>G, NC_000004.12:g.577877C>T, NC_000004.11:g.571666C>G, NC_000004.11:g.571666C>T, NR_148199.1:n.710C>G, NR_148199.1:n.710C>T

Select item 147093873518.

rs1470938735 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:584725 (GRCh38)
4:578514 (GRCh37)
Canonical SPDI:: NC_000004.12:584724:A:G
Gene:: LOC105374338 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000004.12:g.584725A>G, NC_000004.11:g.578514A>G, NR_148199.1:n.1713A>G

Select item 147039366219.

rs1470393662 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:577173 (GRCh38)
4:570962 (GRCh37)
Canonical SPDI:: NC_000004.12:577172:G:A
Gene:: LOC105374338 (Varview), TMEM271 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.577173G>A, NC_000004.11:g.570962G>A, NR_148199.1:n.6G>A

Select item 146726204720.

rs1467262047 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 4:578151 (GRCh38)
4:571940 (GRCh37)
Canonical SPDI:: NC_000004.12:578150:G:A,NC_000004.12:578150:G:T
Gene:: LOC105374338 (Varview), TMEM271 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000019/5 (TOPMED)
T=0.000071/1 (TOMMO)
HGVS:: NC_000004.12:g.578151G>A, NC_000004.12:g.578151G>T, NC_000004.11:g.571940G>A, NC_000004.11:g.571940G>T, NR_148199.1:n.984G>A, NR_148199.1:n.984G>T

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