SNP Links for Nucleotide (Select 1278809209) - SNP

Links from Nucleotide

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Select item 14908919931.

rs1490891993 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 5:88673325 (GRCh38)
5:87969143 (GRCh37)
Canonical SPDI:: NC_000005.10:88673324:T:A,NC_000005.10:88673324:T:C
Gene:: LINC00461 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
C=0.000071/1 (TOMMO)
HGVS:: NC_000005.10:g.88673325T>A, NC_000005.10:g.88673325T>C, NC_000005.9:g.87969143T>A, NC_000005.9:g.87969143T>C, NR_024384.2:n.15A>T, NR_024384.2:n.15A>G, NR_024384.1:n.4A>T, NR_024384.1:n.4A>G, NR_152243.1:n.15A>T, NR_152243.1:n.15A>G, NR_152242.1:n.15A>T, NR_152242.1:n.15A>G, NR_152241.1:n.15A>T, NR_152241.1:n.15A>G

Select item 14899502132.

rs1489950213 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 5:88673193 (GRCh38)
5:87969011 (GRCh37)
Canonical SPDI:: NC_000005.10:88673192:C:A,NC_000005.10:88673192:C:T
Gene:: LINC00461 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.88673193C>A, NC_000005.10:g.88673193C>T, NC_000005.9:g.87969011C>A, NC_000005.9:g.87969011C>T, NR_024384.2:n.147G>T, NR_024384.2:n.147G>A, NR_024384.1:n.136G>T, NR_024384.1:n.136G>A, NR_152243.1:n.147G>T, NR_152243.1:n.147G>A, NR_152242.1:n.147G>T, NR_152242.1:n.147G>A

Select item 14892983173.

rs1489298317 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 5:88673204 (GRCh38)
5:87969022 (GRCh37)
Canonical SPDI:: NC_000005.10:88673203:G:C
Gene:: LINC00461 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.88673204G>C, NC_000005.9:g.87969022G>C, NR_024384.2:n.136C>G, NR_024384.1:n.125C>G, NR_152243.1:n.136C>G, NR_152242.1:n.136C>G

Select item 14890637654.

rs1489063765 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 5:88666092 (GRCh38)
5:87961910 (GRCh37)
Canonical SPDI:: NC_000005.10:88666091:C:A
Gene:: LINC00461 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000005.10:g.88666092C>A, NC_000005.9:g.87961910C>A, NR_024384.2:n.1926G>T, NR_024384.1:n.1915G>T, NR_024383.2:n.1716G>T, NR_024383.1:n.1713G>T, NR_152236.1:n.1845G>T, NR_152234.1:n.1783G>T, NR_152237.1:n.1719G>T, NR_152240.1:n.2529G>T, NR_152232.1:n.1806G>T, NR_152233.1:n.1744G>T, NR_152241.1:n.1735G>T

Select item 14889916135.

rs1488991613 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 5:88667303 (GRCh38)
5:87963121 (GRCh37)
Canonical SPDI:: NC_000005.10:88667302:C:A
Gene:: MIR9-2 (Varview), LINC00461 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.88667303C>A, NC_000005.9:g.87963121C>A, NR_024384.2:n.715G>T, NR_024384.1:n.704G>T, NR_024383.2:n.505G>T, NR_024383.1:n.502G>T, NR_152236.1:n.634G>T, NR_152234.1:n.572G>T, NR_152237.1:n.508G>T, NR_152240.1:n.1318G>T, NR_152232.1:n.595G>T, NR_152233.1:n.533G>T, NR_152241.1:n.524G>T

Select item 14880616376.

rs1488061637 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 5:88667544 (GRCh38)
5:87963362 (GRCh37)
Canonical SPDI:: NC_000005.10:88667543:G:C,NC_000005.10:88667543:G:T
Gene:: MIR9-2 (Varview), LINC00461 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.88667544G>C, NC_000005.10:g.88667544G>T, NC_000005.9:g.87963362G>C, NC_000005.9:g.87963362G>T, NR_024384.2:n.473C>G, NR_024384.2:n.473C>A, NR_024384.1:n.462C>G, NR_024384.1:n.462C>A, NR_024383.2:n.263C>G, NR_024383.2:n.263C>A, NR_024383.1:n.260C>G, NR_024383.1:n.260C>A, NR_152236.1:n.392C>G, NR_152236.1:n.392C>A, NR_152234.1:n.330C>G, NR_152234.1:n.330C>A, NR_152237.1:n.266C>G, NR_152237.1:n.266C>A, NR_152240.1:n.1076C>G, NR_152240.1:n.1076C>A, NR_152232.1:n.353C>G, NR_152232.1:n.353C>A, NR_152233.1:n.291C>G, NR_152233.1:n.291C>A, NR_152241.1:n.282C>G, NR_152241.1:n.282C>A

Select item 14871817087.

rs1487181708 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:88664485 (GRCh38)
5:87960303 (GRCh37)
Canonical SPDI:: NC_000005.10:88664484:A:G
Gene:: LINC00461 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000142/2 (ALFA)
G=0.000023/6 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000005.10:g.88664485A>G, NC_000005.9:g.87960303A>G, NR_024384.2:n.3533T>C, NR_024384.1:n.3522T>C, NR_024383.2:n.3323T>C, NR_024383.1:n.3320T>C, NR_152236.1:n.3452T>C, NR_152234.1:n.3390T>C, NR_152237.1:n.3326T>C, NR_152240.1:n.4136T>C, NR_152232.1:n.3413T>C, NR_152233.1:n.3351T>C, NR_152241.1:n.3342T>C

Select item 14858042628.

rs1485804262 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:88665726 (GRCh38)
5:87961544 (GRCh37)
Canonical SPDI:: NC_000005.10:88665725:G:A
Gene:: LINC00461 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000042/11 (TOPMED)
A=0.000086/12 (GnomAD)
HGVS:: NC_000005.10:g.88665726G>A, NC_000005.9:g.87961544G>A, NR_024384.2:n.2292C>T, NR_024384.1:n.2281C>T, NR_024383.2:n.2082C>T, NR_024383.1:n.2079C>T, NR_152236.1:n.2211C>T, NR_152234.1:n.2149C>T, NR_152237.1:n.2085C>T, NR_152240.1:n.2895C>T, NR_152232.1:n.2172C>T, NR_152233.1:n.2110C>T, NR_152241.1:n.2101C>T

Select item 14842947649.

rs1484294764 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 5:88667114 (GRCh38)
5:87962932 (GRCh37)
Canonical SPDI:: NC_000005.10:88667113:C:A,NC_000005.10:88667113:C:T
Gene:: MIR9-2 (Varview), LINC00461 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000005.10:g.88667114C>A, NC_000005.10:g.88667114C>T, NC_000005.9:g.87962932C>A, NC_000005.9:g.87962932C>T, NR_024384.2:n.904G>T, NR_024384.2:n.904G>A, NR_024384.1:n.893G>T, NR_024384.1:n.893G>A, NR_024383.2:n.694G>T, NR_024383.2:n.694G>A, NR_024383.1:n.691G>T, NR_024383.1:n.691G>A, NR_152236.1:n.823G>T, NR_152236.1:n.823G>A, NR_152234.1:n.761G>T, NR_152234.1:n.761G>A, NR_152237.1:n.697G>T, NR_152237.1:n.697G>A, NR_152240.1:n.1507G>T, NR_152240.1:n.1507G>A, NR_152232.1:n.784G>T, NR_152232.1:n.784G>A, NR_152233.1:n.722G>T, NR_152233.1:n.722G>A, NR_152241.1:n.713G>T, NR_152241.1:n.713G>A

Select item 148374298910.

rs1483742989 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 5:88666087 (GRCh38)
5:87961905 (GRCh37)
Canonical SPDI:: NC_000005.10:88666086:A:C,NC_000005.10:88666086:A:G
Gene:: LINC00461 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.88666087A>C, NC_000005.10:g.88666087A>G, NC_000005.9:g.87961905A>C, NC_000005.9:g.87961905A>G, NR_024384.2:n.1931T>G, NR_024384.2:n.1931T>C, NR_024384.1:n.1920T>G, NR_024384.1:n.1920T>C, NR_024383.2:n.1721T>G, NR_024383.2:n.1721T>C, NR_024383.1:n.1718T>G, NR_024383.1:n.1718T>C, NR_152236.1:n.1850T>G, NR_152236.1:n.1850T>C, NR_152234.1:n.1788T>G, NR_152234.1:n.1788T>C, NR_152237.1:n.1724T>G, NR_152237.1:n.1724T>C, NR_152240.1:n.2534T>G, NR_152240.1:n.2534T>C, NR_152232.1:n.1811T>G, NR_152232.1:n.1811T>C, NR_152233.1:n.1749T>G, NR_152233.1:n.1749T>C, NR_152241.1:n.1740T>G, NR_152241.1:n.1740T>C

Select item 148025746511.

rs1480257465 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 5:88665666 (GRCh38)
5:87961484 (GRCh37)
Canonical SPDI:: NC_000005.10:88665665:T:A
Gene:: LINC00461 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.88665666T>A, NC_000005.9:g.87961484T>A, NR_024384.2:n.2352A>T, NR_024384.1:n.2341A>T, NR_024383.2:n.2142A>T, NR_024383.1:n.2139A>T, NR_152236.1:n.2271A>T, NR_152234.1:n.2209A>T, NR_152237.1:n.2145A>T, NR_152240.1:n.2955A>T, NR_152232.1:n.2232A>T, NR_152233.1:n.2170A>T, NR_152241.1:n.2161A>T

Select item 147943224612.

rs1479432246 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 5:88665949 (GRCh38)
5:87961767 (GRCh37)
Canonical SPDI:: NC_000005.10:88665948:C:A
Gene:: LINC00461 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000029/4 (GnomAD)
A=0.000053/14 (TOPMED)
HGVS:: NC_000005.10:g.88665949C>A, NC_000005.9:g.87961767C>A, NR_024384.2:n.2069G>T, NR_024384.1:n.2058G>T, NR_024383.2:n.1859G>T, NR_024383.1:n.1856G>T, NR_152236.1:n.1988G>T, NR_152234.1:n.1926G>T, NR_152237.1:n.1862G>T, NR_152240.1:n.2672G>T, NR_152232.1:n.1949G>T, NR_152233.1:n.1887G>T, NR_152241.1:n.1878G>T

Select item 147894624113.

rs1478946241 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:88666780 (GRCh38)
5:87962598 (GRCh37)
Canonical SPDI:: NC_000005.10:88666779:G:A
Gene:: MIR9-2 (Varview), LINC00461 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,non_coding_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.88666780G>A, NC_000005.9:g.87962598G>A, NR_024384.2:n.1238C>T, NR_024384.1:n.1227C>T, NR_024383.2:n.1028C>T, NR_024383.1:n.1025C>T, NR_152236.1:n.1157C>T, NR_152234.1:n.1095C>T, NR_152237.1:n.1031C>T, NR_152240.1:n.1841C>T, NR_152232.1:n.1118C>T, NR_152233.1:n.1056C>T, NR_152241.1:n.1047C>T

Select item 147850027614.

rs1478500276 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 5:88665837 (GRCh38)
5:87961655 (GRCh37)
Canonical SPDI:: NC_000005.10:88665836:C:G
Gene:: LINC00461 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000023/6 (TOPMED)
G=0.000036/5 (GnomAD)
HGVS:: NC_000005.10:g.88665837C>G, NC_000005.9:g.87961655C>G, NR_024384.2:n.2181G>C, NR_024384.1:n.2170G>C, NR_024383.2:n.1971G>C, NR_024383.1:n.1968G>C, NR_152236.1:n.2100G>C, NR_152234.1:n.2038G>C, NR_152237.1:n.1974G>C, NR_152240.1:n.2784G>C, NR_152232.1:n.2061G>C, NR_152233.1:n.1999G>C, NR_152241.1:n.1990G>C

Select item 147774132515.

rs1477741325 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 5:88666666 (GRCh38)
5:87962484 (GRCh37)
Canonical SPDI:: NC_000005.10:88666665:C:G,NC_000005.10:88666665:C:T
Gene:: MIR9-2 (Varview), LINC00461 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,non_coding_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000042/11 (TOPMED)
G=0.000043/6 (GnomAD)
HGVS:: NC_000005.10:g.88666666C>G, NC_000005.10:g.88666666C>T, NC_000005.9:g.87962484C>G, NC_000005.9:g.87962484C>T, NR_024384.2:n.1352G>C, NR_024384.2:n.1352G>A, NR_024384.1:n.1341G>C, NR_024384.1:n.1341G>A, NR_024383.2:n.1142G>C, NR_024383.2:n.1142G>A, NR_024383.1:n.1139G>C, NR_024383.1:n.1139G>A, NR_152236.1:n.1271G>C, NR_152236.1:n.1271G>A, NR_152234.1:n.1209G>C, NR_152234.1:n.1209G>A, NR_152237.1:n.1145G>C, NR_152237.1:n.1145G>A, NR_152240.1:n.1955G>C, NR_152240.1:n.1955G>A, NR_152232.1:n.1232G>C, NR_152232.1:n.1232G>A, NR_152233.1:n.1170G>C, NR_152233.1:n.1170G>A, NR_152241.1:n.1161G>C, NR_152241.1:n.1161G>A

Select item 147752182216.

rs1477521822 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:88667245 (GRCh38)
5:87963063 (GRCh37)
Canonical SPDI:: NC_000005.10:88667244:G:A
Gene:: MIR9-2 (Varview), LINC00461 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.88667245G>A, NC_000005.9:g.87963063G>A, NR_024384.2:n.773C>T, NR_024384.1:n.762C>T, NR_024383.2:n.563C>T, NR_024383.1:n.560C>T, NR_152236.1:n.692C>T, NR_152234.1:n.630C>T, NR_152237.1:n.566C>T, NR_152240.1:n.1376C>T, NR_152232.1:n.653C>T, NR_152233.1:n.591C>T, NR_152241.1:n.582C>T

Select item 147674681417.

rs1476746814 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:88666842 (GRCh38)
5:87962660 (GRCh37)
Canonical SPDI:: NC_000005.10:88666841:C:T
Gene:: MIR9-2 (Varview), LINC00461 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,non_coding_transcript_variant,500B_downstream_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000005.10:g.88666842C>T, NC_000005.9:g.87962660C>T, NR_024384.2:n.1176G>A, NR_024384.1:n.1165G>A, NR_024383.2:n.966G>A, NR_024383.1:n.963G>A, NR_152236.1:n.1095G>A, NR_152234.1:n.1033G>A, NR_152237.1:n.969G>A, NR_152240.1:n.1779G>A, NR_152232.1:n.1056G>A, NR_152233.1:n.994G>A, NR_152241.1:n.985G>A

Select item 147531048118.

rs1475310481 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 5:88665465 (GRCh38)
5:87961283 (GRCh37)
Canonical SPDI:: NC_000005.10:88665464:G:C
Gene:: LINC00461 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: C=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.88665465G>C, NC_000005.9:g.87961283G>C, NR_024384.2:n.2553C>G, NR_024384.1:n.2542C>G, NR_024383.2:n.2343C>G, NR_024383.1:n.2340C>G, NR_152236.1:n.2472C>G, NR_152234.1:n.2410C>G, NR_152237.1:n.2346C>G, NR_152240.1:n.3156C>G, NR_152232.1:n.2433C>G, NR_152233.1:n.2371C>G, NR_152241.1:n.2362C>G

Select item 147447577819.

rs1474475778 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 5:88665678 (GRCh38)
5:87961497 (GRCh37)
Canonical SPDI:: NC_000005.10:88665678:AAAAAA:AAAAAAA
Gene:: LINC00461 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAA=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.88665684dup, NC_000005.9:g.87961502dup, NR_024384.2:n.2339dup, NR_024384.1:n.2328dup, NR_024383.2:n.2129dup, NR_024383.1:n.2126dup, NR_152236.1:n.2258dup, NR_152234.1:n.2196dup, NR_152237.1:n.2132dup, NR_152240.1:n.2942dup, NR_152232.1:n.2219dup, NR_152233.1:n.2157dup, NR_152241.1:n.2148dup

Select item 147398762620.

rs1473987626 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 5:88666532 (GRCh38)
5:87962350 (GRCh37)
Canonical SPDI:: NC_000005.10:88666531:CC:C
Gene:: MIR9-2 (Varview), LINC00461 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,non_coding_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000015/4 (TOPMED)
HGVS:: NC_000005.10:g.88666533del, NC_000005.9:g.87962351del, NR_024384.2:n.1486del, NR_024384.1:n.1475del, NR_024383.2:n.1276del, NR_024383.1:n.1273del, NR_152236.1:n.1405del, NR_152234.1:n.1343del, NR_152237.1:n.1279del, NR_152240.1:n.2089del, NR_152232.1:n.1366del, NR_152233.1:n.1304del, NR_152241.1:n.1295del

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