SNP Links for Nucleotide (Select 134031991) - SNP

Links from Nucleotide

Items: 1 to 20 of 32

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Select item 14813600561.

rs1481360056 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25089947 (GRCh38)
15:25335094 (GRCh37)
Canonical SPDI:: NC_000015.10:25089946:A:G
Gene:: SNORD116-22 (Varview), SNORD116-23 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25089947A>G, NC_000015.9:g.25335094A>G, NG_002690.1:g.309038A>G, NR_003336.2:n.26A>G

Select item 14688372392.

rs1468837239 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 15:25090014 (GRCh38)
15:25335161 (GRCh37)
Canonical SPDI:: NC_000015.10:25090013:C:G
Gene:: SNORD116-22 (Varview), SNORD116-23 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25090014C>G, NC_000015.9:g.25335161C>G, NG_002690.1:g.309105C>G, NR_003336.2:n.93C>G

Select item 13709147523.

rs1370914752 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 15:25089929 (GRCh38)
15:25335076 (GRCh37)
Canonical SPDI:: NC_000015.10:25089928:A:T
Gene:: SNORD116-22 (Varview), SNORD116-23 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000026/7 (TOPMED)
HGVS:: NC_000015.10:g.25089929A>T, NC_000015.9:g.25335076A>T, NG_002690.1:g.309020A>T, NR_003336.2:n.8A>T

Select item 13396070744.

rs1339607074 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25089942 (GRCh38)
15:25335089 (GRCh37)
Canonical SPDI:: NC_000015.10:25089941:T:C
Gene:: SNORD116-22 (Varview), SNORD116-23 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000013/3 (GnomAD_exomes)
C=0.000015/4 (TOPMED)
C=0.000119/2 (TOMMO)
HGVS:: NC_000015.10:g.25089942T>C, NC_000015.9:g.25335089T>C, NG_002690.1:g.309033T>C, NR_003336.2:n.21T>C

Select item 12829389165.

rs1282938916 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25089937 (GRCh38)
15:25335084 (GRCh37)
Canonical SPDI:: NC_000015.10:25089936:T:C
Gene:: SNORD116-22 (Varview), SNORD116-23 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000009/2 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25089937T>C, NC_000015.9:g.25335084T>C, NG_002690.1:g.309028T>C, NR_003336.2:n.16T>C

Select item 12048983806.

rs1204898380 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25089932 (GRCh38)
15:25335079 (GRCh37)
Canonical SPDI:: NC_000015.10:25089931:A:G
Gene:: SNORD116-22 (Varview), SNORD116-23 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.25089932A>G, NC_000015.9:g.25335079A>G, NG_002690.1:g.309023A>G, NR_003336.2:n.11A>G

Select item 12034255397.

rs1203425539 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25089943 (GRCh38)
15:25335090 (GRCh37)
Canonical SPDI:: NC_000015.10:25089942:A:G
Gene:: SNORD116-22 (Varview), SNORD116-23 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25089943A>G, NC_000015.9:g.25335090A>G, NG_002690.1:g.309034A>G, NR_003336.2:n.22A>G

Select item 11889631138.

rs1188963113 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 15:25089951 (GRCh38)
15:25335098 (GRCh37)
Canonical SPDI:: NC_000015.10:25089950:T:G
Gene:: SNORD116-22 (Varview), SNORD116-23 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: G=0.000009/2 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25089951T>G, NC_000015.9:g.25335098T>G, NG_002690.1:g.309042T>G, NR_003336.2:n.30T>G

Select item 11700857899.

rs1170085789 [Homo sapiens]

Variant type:: DELINS
Alleles:: CT>- [Show Flanks]
Chromosome:: 15:25089984 (GRCh38)
15:25335131 (GRCh37)
Canonical SPDI:: NC_000015.10:25089981:CTCT:CT
Gene:: SNORD116-22 (Varview), SNORD116-23 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by cluster
MAF:: -=0.000017/4 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25089982CT[1], NC_000015.9:g.25335129CT[1], NG_002690.1:g.309073CT[1], NR_003336.2:n.61CT[1]

Select item 93655180910.

rs936551809 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25089955 (GRCh38)
15:25335102 (GRCh37)
Canonical SPDI:: NC_000015.10:25089954:T:C
Gene:: SNORD116-22 (Varview), SNORD116-23 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000043/6 (GnomAD)
C=0.000049/13 (TOPMED)
HGVS:: NC_000015.10:g.25089955T>C, NC_000015.9:g.25335102T>C, NG_002690.1:g.309046T>C, NR_003336.2:n.34T>C

Select item 77974246211.

rs779742462 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 15:25089961 (GRCh38)
15:25335108 (GRCh37)
Canonical SPDI:: NC_000015.10:25089960:G:A,NC_000015.10:25089960:G:C
Gene:: SNORD116-22 (Varview), SNORD116-23 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by cluster
MAF:: A=0.000009/1 (ExAC)
HGVS:: NC_000015.10:g.25089961G>A, NC_000015.10:g.25089961G>C, NC_000015.9:g.25335108G>A, NC_000015.9:g.25335108G>C, NG_002690.1:g.309052G>A, NG_002690.1:g.309052G>C, NR_003336.2:n.40G>A, NR_003336.2:n.40G>C

Select item 77824653412.

rs778246534 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 15:25089982 (GRCh38)
15:25335129 (GRCh37)
Canonical SPDI:: NC_000015.10:25089981:C:G
Gene:: SNORD116-22 (Varview), SNORD116-23 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
G=0.000004/1 (TOPMED)
G=0.000009/1 (ExAC)
HGVS:: NC_000015.10:g.25089982C>G, NC_000015.9:g.25335129C>G, NG_002690.1:g.309073C>G, NR_003336.2:n.61C>G

Select item 77693963613.

rs776939636 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 15:25090003 (GRCh38)
15:25335150 (GRCh37)
Canonical SPDI:: NC_000015.10:25090002:G:A,NC_000015.10:25090002:G:T
Gene:: SNORD116-22 (Varview), SNORD116-23 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0./0 (ALSPAC)
A=0.000021/3 (GnomAD)
A=0.000035/1 (TOMMO)
A=0.000038/10 (TOPMED)
A=0.000062/7 (ExAC)
A=0.00027/1 (TWINSUK)
A=0.125/1 (KOREAN)
HGVS:: NC_000015.10:g.25090003G>A, NC_000015.10:g.25090003G>T, NC_000015.9:g.25335150G>A, NC_000015.9:g.25335150G>T, NG_002690.1:g.309094G>A, NG_002690.1:g.309094G>T, NR_003336.2:n.82G>A, NR_003336.2:n.82G>T

Select item 77586783314.

rs775867833 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 15:25089996 (GRCh38)
15:25335143 (GRCh37)
Canonical SPDI:: NC_000015.10:25089995:C:G,NC_000015.10:25089995:C:T
Gene:: SNORD116-22 (Varview), SNORD116-23 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000087/2 (ALFA)
T=0.000009/1 (ExAC)
G=0.000021/3 (GnomAD)
G=0.000049/13 (TOPMED)
HGVS:: NC_000015.10:g.25089996C>G, NC_000015.10:g.25089996C>T, NC_000015.9:g.25335143C>G, NC_000015.9:g.25335143C>T, NG_002690.1:g.309087C>G, NG_002690.1:g.309087C>T, NR_003336.2:n.75C>G, NR_003336.2:n.75C>T

Select item 77424269615.

rs774242696 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 15:25090002 (GRCh38)
15:25335149 (GRCh37)
Canonical SPDI:: NC_000015.10:25090001:C:G,NC_000015.10:25090001:C:T
Gene:: SNORD116-22 (Varview), SNORD116-23 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000047/11 (GnomAD_exomes)
T=0.000071/8 (ExAC)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000015.10:g.25090002C>G, NC_000015.10:g.25090002C>T, NC_000015.9:g.25335149C>G, NC_000015.9:g.25335149C>T, NG_002690.1:g.309093C>G, NG_002690.1:g.309093C>T, NR_003336.2:n.81C>G, NR_003336.2:n.81C>T

Select item 77394294216.

rs773942942 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 15:25089925 (GRCh38)
15:25335072 (GRCh37)
Canonical SPDI:: NC_000015.10:25089924:A:T
Gene:: SNORD116-22 (Varview), SNORD116-23 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0./0 (TWINSUK)
T=0.000004/1 (TOPMED)
T=0.000259/1 (ALSPAC)
HGVS:: NC_000015.10:g.25089925A>T, NC_000015.9:g.25335072A>T, NG_002690.1:g.309016A>T, NR_003336.2:n.4A>T

Select item 76748005517.

rs767480055 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25090006 (GRCh38)
15:25335153 (GRCh37)
Canonical SPDI:: NC_000015.10:25090005:C:T
Gene:: SNORD116-22 (Varview), SNORD116-23 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: T=0.000069/16 (GnomAD_exomes)
T=0.000089/10 (ExAC)
HGVS:: NC_000015.10:g.25090006C>T, NC_000015.9:g.25335153C>T, NG_002690.1:g.309097C>T, NR_003336.2:n.85C>T

Select item 76402172718.

rs764021727 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 15:25089931 (GRCh38)
15:25335078 (GRCh37)
Canonical SPDI:: NC_000015.10:25089930:G:A,NC_000015.10:25089930:G:C
Gene:: SNORD116-22 (Varview), SNORD116-23 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.25089931G>A, NC_000015.10:g.25089931G>C, NC_000015.9:g.25335078G>A, NC_000015.9:g.25335078G>C, NG_002690.1:g.309022G>A, NG_002690.1:g.309022G>C, NR_003336.2:n.10G>A, NR_003336.2:n.10G>C

Select item 76315132919.

rs763151329 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25089928 (GRCh38)
15:25335075 (GRCh37)
Canonical SPDI:: NC_000015.10:25089927:G:A
Gene:: SNORD116-22 (Varview), SNORD116-23 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000102/2 (ALFA)
A=0./0 (Korea1K)
A=0.000009/1 (ExAC)
A=0.000011/3 (TOPMED)
A=0.000013/3 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25089928G>A, NC_000015.9:g.25335075G>A, NG_002690.1:g.309019G>A, NR_003336.2:n.7G>A

Select item 75590224420.

rs755902244 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25089956 (GRCh38)
15:25335103 (GRCh37)
Canonical SPDI:: NC_000015.10:25089955:G:A
Gene:: SNORD116-22 (Varview), SNORD116-23 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: A=0.000009/1 (ExAC)
A=0.000009/2 (GnomAD_exomes)
HGVS:: NC_000015.10:g.25089956G>A, NC_000015.9:g.25335103G>A, NG_002690.1:g.309047G>A, NR_003336.2:n.35G>A

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