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Links from Nucleotide

Items: 1 to 20 of 2069

1.

rs1491549967 [Homo sapiens]
    Variant type:
    DEL
    Alleles:
    CA>- [Show Flanks]
    Chromosome:
    10:29457924 (GRCh38)
    10:29746853 (GRCh37)
    Canonical SPDI:
    NC_000010.11:29457923:CA:
    Gene:
    SVIL (Varview), SVIL-AS1 (Varview)
    Functional Consequence:
    3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
    Validated:
    by frequency,by alfa,by cluster
    MAF:
    -=0./0 (ALFA)
    -=0.00014/13 (GnomAD)
    HGVS:
    2.

    rs1491233934 has merged into rs34048226 [Homo sapiens]
      Variant type:
      DELINS
      Alleles:
      AAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA [Show Flanks]
      Chromosome:
      10:29457935 (GRCh38)
      10:29746864 (GRCh37)
      Canonical SPDI:
      NC_000010.11:29457924:AAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000010.11:29457924:AAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000010.11:29457924:AAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000010.11:29457924:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000010.11:29457924:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000010.11:29457924:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000010.11:29457924:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000010.11:29457924:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000010.11:29457924:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA
      Gene:
      SVIL (Varview), SVIL-AS1 (Varview)
      Functional Consequence:
      intron_variant,genic_downstream_transcript_variant,3_prime_UTR_variant
      Validated:
      by frequency,by alfa,by cluster
      MAF:
      AAAAAAAAAAAA=0./0 (ALFA)
      -=0.325/13 (GENOME_DK)
      AA=0.4643/2325 (1000Genomes)
      HGVS:
      NC_000010.11:g.29457935_29457940del, NC_000010.11:g.29457936_29457940del, NC_000010.11:g.29457937_29457940del, NC_000010.11:g.29457938_29457940del, NC_000010.11:g.29457939_29457940del, NC_000010.11:g.29457940del, NC_000010.11:g.29457940dup, NC_000010.11:g.29457939_29457940dup, NC_000010.11:g.29457938_29457940dup, NC_000010.10:g.29746864_29746869del, NC_000010.10:g.29746865_29746869del, NC_000010.10:g.29746866_29746869del, NC_000010.10:g.29746867_29746869del, NC_000010.10:g.29746868_29746869del, NC_000010.10:g.29746869del, NC_000010.10:g.29746869dup, NC_000010.10:g.29746868_29746869dup, NC_000010.10:g.29746867_29746869dup, NG_033998.1:g.282872_282877del, NG_033998.1:g.282873_282877del, NG_033998.1:g.282874_282877del, NG_033998.1:g.282875_282877del, NG_033998.1:g.282876_282877del, NG_033998.1:g.282877del, NG_033998.1:g.282877dup, NG_033998.1:g.282876_282877dup, NG_033998.1:g.282875_282877dup, NM_021738.3:c.*317_*322del, NM_021738.3:c.*318_*322del, NM_021738.3:c.*319_*322del, NM_021738.3:c.*320_*322del, NM_021738.3:c.*321_*322del, NM_021738.3:c.*322del, NM_021738.3:c.*322dup, NM_021738.3:c.*321_*322dup, NM_021738.3:c.*320_*322dup, NM_021738.2:c.*317_*322del, NM_021738.2:c.*318_*322del, NM_021738.2:c.*319_*322del, NM_021738.2:c.*320_*322del, NM_021738.2:c.*321_*322del, NM_021738.2:c.*322del, NM_021738.2:c.*322dup, NM_021738.2:c.*321_*322dup, NM_021738.2:c.*320_*322dup, NM_003174.3:c.*317_*322del, NM_003174.3:c.*318_*322del, NM_003174.3:c.*319_*322del, NM_003174.3:c.*320_*322del, NM_003174.3:c.*321_*322del, NM_003174.3:c.*322del, NM_003174.3:c.*322dup, NM_003174.3:c.*321_*322dup, NM_003174.3:c.*320_*322dup, NM_001323599.2:c.*317_*322del, NM_001323599.2:c.*318_*322del, NM_001323599.2:c.*319_*322del, NM_001323599.2:c.*320_*322del, NM_001323599.2:c.*321_*322del, NM_001323599.2:c.*322del, NM_001323599.2:c.*322dup, NM_001323599.2:c.*321_*322dup, NM_001323599.2:c.*320_*322dup, NM_001323599.1:c.*317_*322del, NM_001323599.1:c.*318_*322del, NM_001323599.1:c.*319_*322del, NM_001323599.1:c.*320_*322del, NM_001323599.1:c.*321_*322del, NM_001323599.1:c.*322del, NM_001323599.1:c.*322dup, NM_001323599.1:c.*321_*322dup, NM_001323599.1:c.*320_*322dup, NM_001323600.1:c.*317_*322del, NM_001323600.1:c.*318_*322del, NM_001323600.1:c.*319_*322del, NM_001323600.1:c.*320_*322del, NM_001323600.1:c.*321_*322del, NM_001323600.1:c.*322del, NM_001323600.1:c.*322dup, NM_001323600.1:c.*321_*322dup, NM_001323600.1:c.*320_*322dup
      3.

      rs1490684031 [Homo sapiens]
        Variant type:
        DELINS
        Alleles:
        AT>- [Show Flanks]
        Chromosome:
        10:29458182 (GRCh38)
        10:29747111 (GRCh37)
        Canonical SPDI:
        NC_000010.11:29458175:ATATATAT:ATATAT
        Gene:
        SVIL (Varview), SVIL-AS1 (Varview)
        Functional Consequence:
        3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
        Validated:
        by frequency,by alfa
        MAF:
        ATATAT=0./0 (ALFA)
        -=0.000004/1 (TOPMED)
        HGVS:
        4.
        5.

        rs1489743658 [Homo sapiens]
          Variant type:
          SNV
          Alleles:
          G>C [Show Flanks]
          Chromosome:
          10:29467745 (GRCh38)
          10:29756674 (GRCh37)
          Canonical SPDI:
          NC_000010.11:29467744:G:C
          Gene:
          SVIL (Varview), SVIL-AS1 (Varview)
          Functional Consequence:
          non_coding_transcript_variant,missense_variant,coding_sequence_variant,intron_variant,genic_downstream_transcript_variant
          Validated:
          by frequency,by alfa,by cluster
          MAF:
          C=0./0 (ALFA)
          C=0.000007/1 (GnomAD)
          C=0.000008/2 (TOPMED)
          HGVS:
          6.

          rs1489718716 [Homo sapiens]
            Variant type:
            SNV
            Alleles:
            C>A [Show Flanks]
            Chromosome:
            10:29499241 (GRCh38)
            10:29788170 (GRCh37)
            Canonical SPDI:
            NC_000010.11:29499240:C:A
            Gene:
            SVIL (Varview)
            Functional Consequence:
            missense_variant,coding_sequence_variant
            Validated:
            by frequency,by alfa,by cluster
            MAF:
            A=0./0 (ALFA)
            A=0.000007/1 (GnomAD)
            A=0.000026/7 (TOPMED)
            HGVS:
            7.

            rs1489420509 [Homo sapiens]
              Variant type:
              SNV
              Alleles:
              T>G [Show Flanks]
              Chromosome:
              10:29555053 (GRCh38)
              10:29843982 (GRCh37)
              Canonical SPDI:
              NC_000010.11:29555052:T:G
              Gene:
              SVIL (Varview)
              Functional Consequence:
              missense_variant,coding_sequence_variant
              Validated:
              by frequency
              MAF:
              G=0.000004/1 (GnomAD_exomes)
              HGVS:
              8.

              rs1489217333 [Homo sapiens]
                Variant type:
                DELINS
                Alleles:
                TATTAAGGTAGA>- [Show Flanks]
                Chromosome:
                10:29457574 (GRCh38)
                10:29746503 (GRCh37)
                Canonical SPDI:
                NC_000010.11:29457570:AGATATTAAGGTAGA:AGA
                Gene:
                SVIL (Varview), SVIL-AS1 (Varview)
                Functional Consequence:
                3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
                Validated:
                by frequency,by alfa,by cluster
                MAF:
                AGA=0.000071/1 (ALFA)
                -=0.000057/15 (TOPMED)
                -=0.000057/8 (GnomAD)
                HGVS:
                9.

                rs1488659542 [Homo sapiens]
                  Variant type:
                  SNV
                  Alleles:
                  A>T [Show Flanks]
                  Chromosome:
                  10:29467793 (GRCh38)
                  10:29756722 (GRCh37)
                  Canonical SPDI:
                  NC_000010.11:29467792:A:T
                  Gene:
                  SVIL (Varview), SVIL-AS1 (Varview)
                  Functional Consequence:
                  non_coding_transcript_variant,missense_variant,coding_sequence_variant,intron_variant,genic_downstream_transcript_variant
                  Validated:
                  by frequency
                  MAF:
                  T=0.000004/1 (GnomAD_exomes)
                  HGVS:
                  10.

                  rs1488550142 [Homo sapiens]
                    Variant type:
                    SNV
                    Alleles:
                    C>T [Show Flanks]
                    Chromosome:
                    10:29550724 (GRCh38)
                    10:29839653 (GRCh37)
                    Canonical SPDI:
                    NC_000010.11:29550723:C:T
                    Gene:
                    SVIL (Varview)
                    Functional Consequence:
                    missense_variant,coding_sequence_variant
                    Validated:
                    by frequency
                    MAF:
                    T=0.000004/1 (GnomAD_exomes)
                    HGVS:
                    12.

                    rs1487970498 [Homo sapiens]
                      Variant type:
                      SNV
                      Alleles:
                      A>G [Show Flanks]
                      Chromosome:
                      10:29523905 (GRCh38)
                      10:29812834 (GRCh37)
                      Canonical SPDI:
                      NC_000010.11:29523904:A:G
                      Gene:
                      SVIL (Varview)
                      Functional Consequence:
                      synonymous_variant,coding_sequence_variant
                      Validated:
                      by frequency,by alfa
                      MAF:
                      G=0./0 (ALFA)
                      G=0.000004/1 (GnomAD_exomes)
                      HGVS:
                      14.

                      rs1486415866 [Homo sapiens]
                        Variant type:
                        DELINS
                        Alleles:
                        ->GCA [Show Flanks]
                        Chromosome:
                        10:29493366 (GRCh38)
                        10:29782296 (GRCh37)
                        Canonical SPDI:
                        NC_000010.11:29493366:AGCA:AGCAGCA
                        Gene:
                        SVIL (Varview)
                        Functional Consequence:
                        coding_sequence_variant,inframe_insertion
                        Validated:
                        by frequency,by alfa
                        MAF:
                        AGCAGCA=0./0 (ALFA)
                        AGC=0.000004/1 (TOPMED)
                        HGVS:
                        15.

                        rs1485840402 [Homo sapiens]
                          Variant type:
                          SNV
                          Alleles:
                          C>G [Show Flanks]
                          Chromosome:
                          10:29523736 (GRCh38)
                          10:29812665 (GRCh37)
                          Canonical SPDI:
                          NC_000010.11:29523735:C:G
                          Gene:
                          SVIL (Varview)
                          Functional Consequence:
                          coding_sequence_variant,missense_variant
                          Validated:
                          by frequency,by alfa,by cluster
                          MAF:
                          G=0.000142/2 (ALFA)
                          G=0.000004/1 (GnomAD_exomes)
                          G=0.000015/4 (TOPMED)
                          G=0.000021/3 (GnomAD)
                          HGVS:
                          16.

                          rs1485800429 [Homo sapiens]
                            Variant type:
                            SNV
                            Alleles:
                            G>T [Show Flanks]
                            Chromosome:
                            10:29554789 (GRCh38)
                            10:29843718 (GRCh37)
                            Canonical SPDI:
                            NC_000010.11:29554788:G:T
                            Gene:
                            SVIL (Varview)
                            Functional Consequence:
                            coding_sequence_variant,missense_variant
                            Validated:
                            by frequency,by alfa
                            MAF:
                            T=0./0 (ALFA)
                            HGVS:
                            17.

                            rs1485318307 [Homo sapiens]
                              Variant type:
                              SNV
                              Alleles:
                              G>A [Show Flanks]
                              Chromosome:
                              10:29458125 (GRCh38)
                              10:29747054 (GRCh37)
                              Canonical SPDI:
                              NC_000010.11:29458124:G:A
                              Gene:
                              SVIL (Varview), SVIL-AS1 (Varview)
                              Functional Consequence:
                              3_prime_UTR_variant,intron_variant,genic_downstream_transcript_variant
                              Validated:
                              by frequency,by alfa,by cluster
                              MAF:
                              A=0./0 (ALFA)
                              A=0.000008/2 (TOPMED)
                              A=0.000021/3 (GnomAD)
                              HGVS:
                              18.

                              rs1484722965 [Homo sapiens]
                                Variant type:
                                SNV
                                Alleles:
                                A>T [Show Flanks]
                                Chromosome:
                                10:29550730 (GRCh38)
                                10:29839659 (GRCh37)
                                Canonical SPDI:
                                NC_000010.11:29550729:A:T
                                Gene:
                                SVIL (Varview)
                                Functional Consequence:
                                coding_sequence_variant,missense_variant
                                Validated:
                                by frequency,by alfa,by cluster
                                MAF:
                                T=0.000671/3 (ALFA)
                                T=0.000007/1 (GnomAD)
                                T=0.00067/3 (Estonian)
                                HGVS:
                                20.

                                rs1483912666 [Homo sapiens]
                                  Variant type:
                                  SNV
                                  Alleles:
                                  C>G [Show Flanks]
                                  Chromosome:
                                  10:29465744 (GRCh38)
                                  10:29754673 (GRCh37)
                                  Canonical SPDI:
                                  NC_000010.11:29465743:C:G
                                  Gene:
                                  SVIL (Varview), SVIL-AS1 (Varview)
                                  Functional Consequence:
                                  coding_sequence_variant,intron_variant,missense_variant,genic_downstream_transcript_variant
                                  Validated:
                                  by frequency,by alfa
                                  MAF:
                                  G=0./0 (ALFA)
                                  G=0.000004/1 (TOPMED)
                                  HGVS:

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