SNP Links for Nucleotide (Select 189339220) - SNP

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Select item 14915462951.

rs1491546295 [Homo sapiens]

Variant type:: INS
Alleles:: ->CTGT [Show Flanks]
Chromosome:: 2:72151071 (GRCh38)
2:72378201 (GRCh37)
Canonical SPDI:: NC_000002.12:72151071::CTGT
Validated:: by frequency,by alfa,by cluster
MAF:: CTGT=0./0 (ALFA)
CTGT=0.000014/2 (GnomAD)
CTGT=0.000015/4 (TOPMED)
HGVS:: NC_000002.12:g.72151071_72151072insCTGT, NC_000002.11:g.72378200_72378201insCTGT, NG_007957.1:g.1763_1764insACAG

Select item 14915024862.

rs1491502486 has merged into rs60831202 [Homo sapiens]

Variant type:: DELINS
Alleles:: CACACACACACACACACACACACACACA>-,CA,CACA,CACACA,CACACACA,CACACACACA,CACACACACACA,CACACACACACACA,CACACACACACACACA,CACACACACACACACACA,CACACACACACACACACACA,CACACACACACACACACACACA,CACACACACACACACACACACACA,CACACACACACACACACACACACACA,CACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACACA,CACACACACACACACACACACACACACACACACACACACA [Show Flanks]
Chromosome:: 2:72152024 (GRCh38)
2:72379153 (GRCh37)
Canonical SPDI:: NC_000002.12:72152005:CACACACACACACACACACACACACACACACACACACACACACACA:CACACACACACACACACA,NC_000002.12:72152005:CACACACACACACACACACACACACACACACACACACACACACACA:CACACACACACACACACACA,NC_000002.12:72152005:CACACACACACACACACACACACACACACACACACACACACACACA:CACACACACACACACACACACA,NC_000002.12:72152005:CACACACACACACACACACACACACACACACACACACACACACACA:CACACACACACACACACACACACA,NC_000002.12:72152005:CACACACACACACACACACACACACACACACACACACACACACACA:CACACACACACACACACACACACACA,NC_000002.12:72152005:CACACACACACACACACACACACACACACACACACACACACACACA:CACACACACACACACACACACACACACA,NC_000002.12:72152005:CACACACACACACACACACACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACA,NC_000002.12:72152005:CACACACACACACACACACACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACACA,NC_000002.12:72152005:CACACACACACACACACACACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACACACA,NC_000002.12:72152005:CACACACACACACACACACACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACACACACA,NC_000002.12:72152005:CACACACACACACACACACACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACACACACACA,NC_000002.12:72152005:CACACACACACACACACACACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACACACACACACA,NC_000002.12:72152005:CACACACACACACACACACACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACACACACACACACA,NC_000002.12:72152005:CACACACACACACACACACACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACACACACACACACACA,NC_000002.12:72152005:CACACACACACACACACACACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACACACACACACACACACACA,NC_000002.12:72152005:CACACACACACACACACACACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000002.12:72152005:CACACACACACACACACACACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000002.12:72152005:CACACACACACACACACACACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000002.12:72152005:CACACACACACACACACACACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACACACACACACACACACACACACACACA,NC_000002.12:72152005:CACACACACACACACACACACACACACACACACACACACACACACA:CACACACACACACACACACACACACACACACACACACACACACACACACACACACACA
Validated:: by frequency,by alfa,by cluster
MAF:: CACACACACACACACACA=0./0 (ALFA)
HGVS:: NC_000002.12:g.72152006CA[9], NC_000002.12:g.72152006CA[10], NC_000002.12:g.72152006CA[11], NC_000002.12:g.72152006CA[12], NC_000002.12:g.72152006CA[13], NC_000002.12:g.72152006CA[14], NC_000002.12:g.72152006CA[15], NC_000002.12:g.72152006CA[16], NC_000002.12:g.72152006CA[17], NC_000002.12:g.72152006CA[18], NC_000002.12:g.72152006CA[19], NC_000002.12:g.72152006CA[20], NC_000002.12:g.72152006CA[21], NC_000002.12:g.72152006CA[22], NC_000002.12:g.72152006CA[24], NC_000002.12:g.72152006CA[25], NC_000002.12:g.72152006CA[26], NC_000002.12:g.72152006CA[27], NC_000002.12:g.72152006CA[28], NC_000002.12:g.72152006CA[29], NC_000002.11:g.72379135CA[9], NC_000002.11:g.72379135CA[10], NC_000002.11:g.72379135CA[11], NC_000002.11:g.72379135CA[12], NC_000002.11:g.72379135CA[13], NC_000002.11:g.72379135CA[14], NC_000002.11:g.72379135CA[15], NC_000002.11:g.72379135CA[16], NC_000002.11:g.72379135CA[17], NC_000002.11:g.72379135CA[18], NC_000002.11:g.72379135CA[19], NC_000002.11:g.72379135CA[20], NC_000002.11:g.72379135CA[21], NC_000002.11:g.72379135CA[22], NC_000002.11:g.72379135CA[24], NC_000002.11:g.72379135CA[25], NC_000002.11:g.72379135CA[26], NC_000002.11:g.72379135CA[27], NC_000002.11:g.72379135CA[28], NC_000002.11:g.72379135CA[29], NG_007957.1:g.784TG[9], NG_007957.1:g.784TG[10], NG_007957.1:g.784TG[11], NG_007957.1:g.784TG[12], NG_007957.1:g.784TG[13], NG_007957.1:g.784TG[14], NG_007957.1:g.784TG[15], NG_007957.1:g.784TG[16], NG_007957.1:g.784TG[17], NG_007957.1:g.784TG[18], NG_007957.1:g.784TG[19], NG_007957.1:g.784TG[20], NG_007957.1:g.784TG[21], NG_007957.1:g.784TG[22], NG_007957.1:g.784TG[24], NG_007957.1:g.784TG[25], NG_007957.1:g.784TG[26], NG_007957.1:g.784TG[27], NG_007957.1:g.784TG[28], NG_007957.1:g.784TG[29]

Select item 14914493193.

rs1491449319 [Homo sapiens]

Variant type:: DEL
Alleles:: CC>- [Show Flanks]
Chromosome:: 2:72152005 (GRCh38)
2:72379134 (GRCh37)
Canonical SPDI:: NC_000002.12:72152004:CC:
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.00015/13 (GnomAD)
HGVS:: NC_000002.12:g.72152005_72152006del, NC_000002.11:g.72379134_72379135del, NG_007957.1:g.829_830del

Select item 14914228064.

rs1491422806 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ACAACACAACACACACACAACACACAC [Show Flanks]
Chromosome:: 2:72149253 (GRCh38)
2:72376383 (GRCh37)
Canonical SPDI:: NC_000002.12:72149253:ACACACACACAACACACAC:ACACACACACAACACACACACAACACAACACACACACAACACACAC
Gene:: CYP26B1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACACACAACACACACACAACACAACACACACACAACACACAC=0.000084/1 (ALFA)
ACACACACACAACACACACACAACACA=0.000857/120 (GnomAD)
HGVS:: NC_000002.12:g.72149254_72149272ACACACACACA[2]ACACAACACAC[2]AC[1], NC_000002.11:g.72376383_72376401ACACACACACA[2]ACACAACACAC[2]AC[1], NG_007957.1:g.3563_3581GTGTGTGTTGT[2]GTTGTGTGTGT[2]GT[1]

Select item 14911975515.

rs1491197551 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CAGA [Show Flanks]
Chromosome:: 2:72152050 (GRCh38)
2:72379180 (GRCh37)
Canonical SPDI:: NC_000002.12:72152050:A:ACAGA
Validated:: by frequency,by alfa
MAF:: ACAGA=0./0 (ALFA)
ACAG=0.000008/1 (GnomAD)
HGVS:: NC_000002.12:g.72152051_72152052insCAGA, NC_000002.11:g.72379180_72379181insCAGA, NG_007957.1:g.784_785insCTGT

Select item 14911504826.

rs1491150482 has merged into rs1016270719 [Homo sapiens]

Variant type:: DELINS
Alleles:: CACA>-,CA,CACACA [Show Flanks]
Chromosome:: 2:72149261 (GRCh38)
2:72376390 (GRCh37)
Canonical SPDI:: NC_000002.12:72149252:CACACACACACA:CACACACA,NC_000002.12:72149252:CACACACACACA:CACACACACA,NC_000002.12:72149252:CACACACACACA:CACACACACACACA
Gene:: CYP26B1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CACACACACA=0./0 (ALFA)
-=0.000034/9 (TOPMED)
CA=0.000035/1 (TOMMO)
CA=0.004739/1 (Vietnamese)
HGVS:: NC_000002.12:g.72149253CA[4], NC_000002.12:g.72149253CA[5], NC_000002.12:g.72149253CA[7], NC_000002.11:g.72376382CA[4], NC_000002.11:g.72376382CA[5], NC_000002.11:g.72376382CA[7], NG_007957.1:g.3571TG[4], NG_007957.1:g.3571TG[5], NG_007957.1:g.3571TG[7]

Select item 14909060177.

rs1490906017 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 2:72146749 (GRCh38)
2:72373878 (GRCh37)
Canonical SPDI:: NC_000002.12:72146748:C:G
Gene:: CYP26B1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.72146749C>G, NC_000002.11:g.72373878C>G, NG_007957.1:g.6086G>C

Select item 14908778548.

rs1490877854 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 2:72133763 (GRCh38)
2:72360892 (GRCh37)
Canonical SPDI:: NC_000002.12:72133762:C:A
Gene:: CYP26B1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.72133763C>A, NC_000002.11:g.72360892C>A, NG_007957.1:g.19072G>T

Select item 14907956589.

rs1490795658 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 2:72152358 (GRCh38)
2:72379487 (GRCh37)
Canonical SPDI:: NC_000002.12:72152357:A:
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000023/6 (TOPMED)
-=0.000036/5 (GnomAD)
HGVS:: NC_000002.12:g.72152358del, NC_000002.11:g.72379487del, NG_007957.1:g.477del

Select item 149061896910.

rs1490618969 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 2:72140708 (GRCh38)
2:72367837 (GRCh37)
Canonical SPDI:: NC_000002.12:72140707:C:A,NC_000002.12:72140707:C:G
Gene:: CYP26B1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000002.12:g.72140708C>A, NC_000002.12:g.72140708C>G, NC_000002.11:g.72367837C>A, NC_000002.11:g.72367837C>G, NG_007957.1:g.12127G>T, NG_007957.1:g.12127G>C

Select item 149041378211.

rs1490413782 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:72137250 (GRCh38)
2:72364379 (GRCh37)
Canonical SPDI:: NC_000002.12:72137249:G:A
Gene:: CYP26B1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.72137250G>A, NC_000002.11:g.72364379G>A, NG_007957.1:g.15585C>T

Select item 149040843012.

rs1490408430 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:72139097 (GRCh38)
2:72366226 (GRCh37)
Canonical SPDI:: NC_000002.12:72139096:T:C
Gene:: CYP26B1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.72139097T>C, NC_000002.11:g.72366226T>C, NG_007957.1:g.13738A>G

Select item 149038867713.

rs1490388677 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:72134239 (GRCh38)
2:72361368 (GRCh37)
Canonical SPDI:: NC_000002.12:72134238:C:T
Gene:: CYP26B1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000002.12:g.72134239C>T, NC_000002.11:g.72361368C>T, NG_007957.1:g.18596G>A

Select item 149032715814.

rs1490327158 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 2:72139855 (GRCh38)
2:72366984 (GRCh37)
Canonical SPDI:: NC_000002.12:72139854:C:A,NC_000002.12:72139854:C:G
Gene:: CYP26B1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.72139855C>A, NC_000002.12:g.72139855C>G, NC_000002.11:g.72366984C>A, NC_000002.11:g.72366984C>G, NG_007957.1:g.12980G>T, NG_007957.1:g.12980G>C

Select item 149030639415.

rs1490306394 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:72151352 (GRCh38)
2:72378481 (GRCh37)
Canonical SPDI:: NC_000002.12:72151351:G:C
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.72151352G>C, NC_000002.11:g.72378481G>C, NG_007957.1:g.1483C>G

Select item 149016453616.

rs1490164536 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 2:72147598 (GRCh38)
2:72374727 (GRCh37)
Canonical SPDI:: NC_000002.12:72147597:C:G
Gene:: CYP26B1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
HGVS:: NC_000002.12:g.72147598C>G, NC_000002.11:g.72374727C>G, NG_007957.1:g.5237G>C

Select item 149010325817.

rs1490103258 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:72135535 (GRCh38)
2:72362664 (GRCh37)
Canonical SPDI:: NC_000002.12:72135534:G:A
Gene:: CYP26B1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000029/4 (GnomAD)
HGVS:: NC_000002.12:g.72135535G>A, NC_000002.11:g.72362664G>A, NG_007957.1:g.17300C>T

Select item 149008722618.

rs1490087226 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 2:72146392 (GRCh38)
2:72373521 (GRCh37)
Canonical SPDI:: NC_000002.12:72146391:A:T
Gene:: CYP26B1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.72146392A>T, NC_000002.11:g.72373521A>T, NG_007957.1:g.6443T>A

Select item 149005999619.

rs1490059996 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:72133341 (GRCh38)
2:72360470 (GRCh37)
Canonical SPDI:: NC_000002.12:72133340:T:C
Gene:: CYP26B1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.72133341T>C, NC_000002.11:g.72360470T>C, NG_007957.1:g.19494A>G

Select item 148982041120.

rs1489820411 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 2:72152046 (GRCh38)
2:72379175 (GRCh37)
Canonical SPDI:: NC_000002.12:72152045:C:G
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000002.12:g.72152046C>G, NC_000002.11:g.72379175C>G, NG_007957.1:g.789G>C

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