SNP Links for Nucleotide (Select 215422346) - SNP

Links from Nucleotide

Items: 1 to 20 of 781

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Select item 14914246171.

rs1491424617 [Homo sapiens]

Variant type:: DEL
Alleles:: TG>- [Show Flanks]
Chromosome:: 9:136725233 (GRCh38)
9:139619685 (GRCh37)
Canonical SPDI:: NC_000009.12:136725232:TG:
Gene:: SNHG7 (Varview), DIPK1B (Varview), LOC124900276 (Varview)
Functional Consequence:: 500B_downstream_variant,non_coding_transcript_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0.00067/8 (ALFA)
HGVS:: NC_000009.12:g.136725233_136725234del, NC_000009.11:g.139619685_139619686del, NR_003672.2:n.2157_2158del, NM_032887.1:c.*325_*326del

Select item 14908557472.

rs1490855747 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:136726382 (GRCh38)
9:139620834 (GRCh37)
Canonical SPDI:: NC_000009.12:136726381:A:G
Gene:: SNHG7 (Varview), SNORA17A (Varview), SNORA17B (Varview), LOC124900276 (Varview)
Functional Consequence:: 5_prime_UTR_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.136726382A>G, NC_000009.11:g.139620834A>G, NR_003672.2:n.1009T>C, XM_047424334.1:c.-3853T>C, NR_024542.1:n.380T>C, NR_024543.1:n.380T>C

Select item 14908544533.

rs1490854453 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 9:136725945 (GRCh38)
9:139620397 (GRCh37)
Canonical SPDI:: NC_000009.12:136725944:CCCC:CCC
Gene:: SNHG7 (Varview), SNORA17B (Varview), LOC124900276 (Varview)
Functional Consequence:: 500B_downstream_variant,non_coding_transcript_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: CCC=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.136725948del, NC_000009.11:g.139620400del, NR_003672.2:n.1446del, NM_032887.1:c.-273del

Select item 14904821464.

rs1490482146 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:136726652 (GRCh38)
9:139621104 (GRCh37)
Canonical SPDI:: NC_000009.12:136726651:C:A
Gene:: SNHG7 (Varview), SNORA17A (Varview), SNORA17B (Varview), LOC124900276 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000151/40 (TOPMED)
A=0.000159/22 (GnomAD)
HGVS:: NC_000009.12:g.136726652C>A, NC_000009.11:g.139621104C>A, NR_003672.2:n.739G>T

Select item 14903152305.

rs1490315230 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 9:136726935 (GRCh38)
9:139621387 (GRCh37)
Canonical SPDI:: NC_000009.12:136726934:T:G
Gene:: SNHG7 (Varview), SNORA17A (Varview), SNORA17B (Varview), LOC124900276 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.136726935T>G, NC_000009.11:g.139621387T>G, NR_003672.2:n.456A>C

Select item 14898722256.

rs1489872225 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 9:136726578 (GRCh38)
9:139621030 (GRCh37)
Canonical SPDI:: NC_000009.12:136726577:C:G,NC_000009.12:136726577:C:T
Gene:: SNHG7 (Varview), SNORA17A (Varview), SNORA17B (Varview), LOC124900276 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.136726578C>G, NC_000009.12:g.136726578C>T, NC_000009.11:g.139621030C>G, NC_000009.11:g.139621030C>T, NR_003672.2:n.813G>C, NR_003672.2:n.813G>A

Select item 14886316327.

rs1488631632 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:136727920 (GRCh38)
9:139622372 (GRCh37)
Canonical SPDI:: NC_000009.12:136727919:C:T
Gene:: SNHG7 (Varview), SNORA17A (Varview), SNORA17B (Varview), LOC124900276 (Varview)
Functional Consequence:: 5_prime_UTR_variant,upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.136727920C>T, NC_000009.11:g.139622372C>T, NR_003672.2:n.265G>A, XM_047424334.1:c.-3968G>A, NR_024542.1:n.265G>A, NR_024543.1:n.265G>A

Select item 14869699678.

rs1486969967 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 9:136728107 (GRCh38)
9:139622559 (GRCh37)
Canonical SPDI:: NC_000009.12:136728106:C:G
Gene:: SNHG7 (Varview), SNORA17A (Varview), SNORA17B (Varview), LOC124900276 (Varview)
Functional Consequence:: 5_prime_UTR_variant,upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.136728107C>G, NC_000009.11:g.139622559C>G, NR_003672.2:n.78G>C, XM_047424334.1:c.-4155G>C, NR_024542.1:n.78G>C, NR_024543.1:n.78G>C

Select item 14860600279.

rs1486060027 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:136725508 (GRCh38)
9:139619960 (GRCh37)
Canonical SPDI:: NC_000009.12:136725507:G:A
Gene:: SNHG7 (Varview), LOC124900276 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000084/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000009.12:g.136725508G>A, NC_000009.11:g.139619960G>A, NR_003672.2:n.1883C>T, NM_032887.1:c.*51C>T

Select item 148440488310.

rs1484404883 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 9:136725848 (GRCh38)
9:139620300 (GRCh37)
Canonical SPDI:: NC_000009.12:136725847:C:
Gene:: SNHG7 (Varview), SNORA17B (Varview), LOC124900276 (Varview)
Functional Consequence:: 500B_downstream_variant,non_coding_transcript_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000053/1 (ALFA)
-=0.000008/1 (GnomAD)
-=0.000223/1 (Estonian)
HGVS:: NC_000009.12:g.136725848del, NC_000009.11:g.139620300del, NR_003672.2:n.1543del, NM_032887.1:c.-176del

Select item 148342647911.

rs1483426479 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:136726521 (GRCh38)
9:139620973 (GRCh37)
Canonical SPDI:: NC_000009.12:136726520:C:T
Gene:: SNHG7 (Varview), SNORA17A (Varview), SNORA17B (Varview), LOC124900276 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.0002/1 (ALFA)
T=0.0002/1 (Estonian)
HGVS:: NC_000009.12:g.136726521C>T, NC_000009.11:g.139620973C>T, NR_003672.2:n.870G>A

Select item 148243082112.

rs1482430821 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 9:136725669 (GRCh38)
9:139620121 (GRCh37)
Canonical SPDI:: NC_000009.12:136725668:C:G
Gene:: SNHG7 (Varview), SNORA17B (Varview), LOC124900276 (Varview)
Functional Consequence:: 500B_downstream_variant,non_coding_transcript_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.136725669C>G, NC_000009.11:g.139620121C>G, NR_003672.2:n.1722G>C, NM_032887.1:c.4G>C

Select item 148186698513.

rs1481866985 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:136725729 (GRCh38)
9:139620181 (GRCh37)
Canonical SPDI:: NC_000009.12:136725728:G:A
Gene:: SNHG7 (Varview), SNORA17B (Varview), LOC124900276 (Varview)
Functional Consequence:: 500B_downstream_variant,non_coding_transcript_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.136725729G>A, NC_000009.11:g.139620181G>A, NR_003672.2:n.1662C>T, NM_032887.1:c.-57C>T

Select item 148177152014.

rs1481771520 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:136725621 (GRCh38)
9:139620073 (GRCh37)
Canonical SPDI:: NC_000009.12:136725620:G:A
Gene:: SNHG7 (Varview), SNORA17B (Varview), LOC124900276 (Varview)
Functional Consequence:: 500B_downstream_variant,non_coding_transcript_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000019/5 (TOPMED)
HGVS:: NC_000009.12:g.136725621G>A, NC_000009.11:g.139620073G>A, NR_003672.2:n.1770C>T, NM_032887.1:c.52C>T

Select item 148114269015.

rs1481142690 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:136725804 (GRCh38)
9:139620256 (GRCh37)
Canonical SPDI:: NC_000009.12:136725803:T:C
Gene:: SNHG7 (Varview), SNORA17B (Varview), LOC124900276 (Varview)
Functional Consequence:: 500B_downstream_variant,non_coding_transcript_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00085/10 (ALFA)
C=0.00224/4 (Korea1K)
C=0.09898/290 (KOREAN)
HGVS:: NC_000009.12:g.136725804T>C, NC_000009.11:g.139620256T>C, NR_003672.2:n.1587A>G, NM_032887.1:c.-132A>G

Select item 148036946916.

rs1480369469 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:136726280 (GRCh38)
9:139620732 (GRCh37)
Canonical SPDI:: NC_000009.12:136726279:A:G
Gene:: SNHG7 (Varview), SNORA17A (Varview), SNORA17B (Varview), LOC124900276 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.136726280A>G, NC_000009.11:g.139620732A>G, NR_003672.2:n.1111T>C

Select item 147987231017.

rs1479872310 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:136727000 (GRCh38)
9:139621452 (GRCh37)
Canonical SPDI:: NC_000009.12:136726999:T:A
Gene:: SNHG7 (Varview), SNORA17A (Varview), SNORA17B (Varview), LOC124900276 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.136727000T>A, NC_000009.11:g.139621452T>A, NR_003672.2:n.391A>T

Select item 147985601518.

rs1479856015 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:136726364 (GRCh38)
9:139620816 (GRCh37)
Canonical SPDI:: NC_000009.12:136726363:G:A
Gene:: SNHG7 (Varview), SNORA17A (Varview), SNORA17B (Varview), LOC124900276 (Varview)
Functional Consequence:: 5_prime_UTR_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000034/9 (TOPMED)
A=0.000057/8 (GnomAD)
HGVS:: NC_000009.12:g.136726364G>A, NC_000009.11:g.139620816G>A, NR_003672.2:n.1027C>T, XM_047424334.1:c.-3835C>T, NR_024542.1:n.398C>T, NR_024543.1:n.398C>T

Select item 147980447019.

rs1479804470 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TAGTTACATTGGAGGATT [Show Flanks]
Chromosome:: 9:136726994 (GRCh38)
9:139621447 (GRCh37)
Canonical SPDI:: NC_000009.12:136726994:TTAGTTACATTGGAGGATT:TTAGTTACATTGGAGGATTTAGTTACATTGGAGGATT
Gene:: SNHG7 (Varview), SNORA17A (Varview), SNORA17B (Varview), LOC124900276 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTAGTTACATTGGAGGATTTAGTTACATTGGAGGATT=0./0 (ALFA)
TTAGTTACATTGGAGGAT=0.000007/1 (GnomAD)
TTAGTTACATTGGAGGAT=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.136726996_136727013dup, NC_000009.11:g.139621448_139621465dup, NR_003672.2:n.379_396dup

Select item 147805642720.

rs1478056427 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:136725318 (GRCh38)
9:139619770 (GRCh37)
Canonical SPDI:: NC_000009.12:136725317:C:A,NC_000009.12:136725317:C:T
Gene:: SNHG7 (Varview), LOC124900276 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.136725318C>A, NC_000009.12:g.136725318C>T, NC_000009.11:g.139619770C>A, NC_000009.11:g.139619770C>T, NR_003672.2:n.2073G>T, NR_003672.2:n.2073G>A, NM_032887.1:c.*241G>T, NM_032887.1:c.*241G>A

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