SNP Links for Nucleotide (Select 222352138) - SNP

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Links from Nucleotide

Items: 1 to 20 of 31

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Select item 14663417521.

rs1466341752 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 5:140726230 (GRCh38)
5:140105815 (GRCh37)
Canonical SPDI:: NC_000005.10:140726229:C:G,NC_000005.10:140726229:C:T
Gene:: VTRNA1-3 (Varview), LOC105378198 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000034/9 (TOPMED)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000005.10:g.140726230C>G, NC_000005.10:g.140726230C>T, NC_000005.9:g.140105815C>G, NC_000005.9:g.140105815C>T, NG_061559.1:g.387C>G, NG_061559.1:g.387C>T, NR_026705.1:n.72C>G, NR_026705.1:n.72C>T

Select item 14379540882.

rs1437954088 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 5:140726161 (GRCh38)
5:140105746 (GRCh37)
Canonical SPDI:: NC_000005.10:140726160:CT:
Gene:: VTRNA1-3 (Varview), LOC105378198 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.140726161_140726162del, NC_000005.9:g.140105746_140105747del, NG_061559.1:g.318_319del, NR_026705.1:n.3_4del

Select item 14328293743.

rs1432829374 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:140726223 (GRCh38)
5:140105808 (GRCh37)
Canonical SPDI:: NC_000005.10:140726222:C:T
Gene:: VTRNA1-3 (Varview), LOC105378198 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
T=0.000035/1 (TOMMO)
HGVS:: NC_000005.10:g.140726223C>T, NC_000005.9:g.140105808C>T, NG_061559.1:g.380C>T, NR_026705.1:n.65C>T

Select item 14323960284.

rs1432396028 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:140726188 (GRCh38)
5:140105773 (GRCh37)
Canonical SPDI:: NC_000005.10:140726187:G:A
Gene:: VTRNA1-3 (Varview), LOC105378198 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.035829/425 (ALFA)
A=0.000029/4 (GnomAD)
A=0.013689/40 (KOREAN)
HGVS:: NC_000005.10:g.140726188G>A, NC_000005.9:g.140105773G>A, NG_061559.1:g.345G>A, NR_026705.1:n.30G>A

Select item 13667973735.

rs1366797373 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:140726186 (GRCh38)
5:140105771 (GRCh37)
Canonical SPDI:: NC_000005.10:140726185:G:A
Gene:: VTRNA1-3 (Varview), LOC105378198 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.03633/431 (ALFA)
A=0.01437/42 (KOREAN)
HGVS:: NC_000005.10:g.140726186G>A, NC_000005.9:g.140105771G>A, NG_061559.1:g.343G>A, NR_026705.1:n.28G>A

Select item 13649694646.

rs1364969464 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:140726202 (GRCh38)
5:140105787 (GRCh37)
Canonical SPDI:: NC_000005.10:140726201:C:T
Gene:: VTRNA1-3 (Varview), LOC105378198 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000005.10:g.140726202C>T, NC_000005.9:g.140105787C>T, NG_061559.1:g.359C>T, NR_026705.1:n.44C>T

Select item 13596359667.

rs1359635966 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:140726210 (GRCh38)
5:140105795 (GRCh37)
Canonical SPDI:: NC_000005.10:140726209:G:A
Gene:: VTRNA1-3 (Varview), LOC105378198 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.140726210G>A, NC_000005.9:g.140105795G>A, NG_061559.1:g.367G>A, NR_026705.1:n.52G>A

Select item 13476961788.

rs1347696178 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 5:140726234 (GRCh38)
5:140105820 (GRCh37)
Canonical SPDI:: NC_000005.10:140726234:T:TT
Gene:: VTRNA1-3 (Varview), LOC105378198 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.140726235dup, NC_000005.9:g.140105820dup, NG_061559.1:g.392dup, NR_026705.1:n.77dup

Select item 12964970909.

rs1296497090 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 5:140726192 (GRCh38)
5:140105777 (GRCh37)
Canonical SPDI:: NC_000005.10:140726191:C:G,NC_000005.10:140726191:C:T
Gene:: VTRNA1-3 (Varview), LOC105378198 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.00457/51 (ALFA)
G=0.01198/35 (KOREAN)
HGVS:: NC_000005.10:g.140726192C>G, NC_000005.10:g.140726192C>T, NC_000005.9:g.140105777C>G, NC_000005.9:g.140105777C>T, NG_061559.1:g.349C>G, NG_061559.1:g.349C>T, NR_026705.1:n.34C>G, NR_026705.1:n.34C>T

Select item 128134584210.

rs1281345842 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:140726196 (GRCh38)
5:140105781 (GRCh37)
Canonical SPDI:: NC_000005.10:140726195:A:G
Gene:: VTRNA1-3 (Varview), LOC105378198 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,non_coding_transcript_variant
HGVS:: NC_000005.10:g.140726196A>G, NC_000005.9:g.140105781A>G, NG_061559.1:g.353A>G, NR_026705.1:n.38A>G

Select item 128117772511.

rs1281177725 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:140726207 (GRCh38)
5:140105792 (GRCh37)
Canonical SPDI:: NC_000005.10:140726206:C:T
Gene:: VTRNA1-3 (Varview), LOC105378198 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000072/19 (TOPMED)
HGVS:: NC_000005.10:g.140726207C>T, NC_000005.9:g.140105792C>T, NG_061559.1:g.364C>T, NR_026705.1:n.49C>T

Select item 127516796112.

rs1275167961 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 5:140726220 (GRCh38)
5:140105805 (GRCh37)
Canonical SPDI:: NC_000005.10:140726219:G:C,NC_000005.10:140726219:G:T
Gene:: VTRNA1-3 (Varview), LOC105378198 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.001092/2 (Korea1K)
T=0.001711/5 (KOREAN)
HGVS:: NC_000005.10:g.140726220G>C, NC_000005.10:g.140726220G>T, NC_000005.9:g.140105805G>C, NC_000005.9:g.140105805G>T, NG_061559.1:g.377G>C, NG_061559.1:g.377G>T, NR_026705.1:n.62G>C, NR_026705.1:n.62G>T

Select item 126562011613.

rs1265620116 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 5:140726225 (GRCh38)
5:140105810 (GRCh37)
Canonical SPDI:: NC_000005.10:140726224:G:T
Gene:: VTRNA1-3 (Varview), LOC105378198 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.140726225G>T, NC_000005.9:g.140105810G>T, NG_061559.1:g.382G>T, NR_026705.1:n.67G>T

Select item 125607739914.

rs1256077399 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 5:140726236 (GRCh38)
5:140105821 (GRCh37)
Canonical SPDI:: NC_000005.10:140726235:C:G
Gene:: VTRNA1-3 (Varview), LOC105378198 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.140726236C>G, NC_000005.9:g.140105821C>G, NG_061559.1:g.393C>G, NR_026705.1:n.78C>G

Select item 122012457915.

rs1220124579 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 5:140726203 (GRCh38)
5:140105788 (GRCh37)
Canonical SPDI:: NC_000005.10:140726202:C:G,NC_000005.10:140726202:C:T
Gene:: VTRNA1-3 (Varview), LOC105378198 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000005.10:g.140726203C>G, NC_000005.10:g.140726203C>T, NC_000005.9:g.140105788C>G, NC_000005.9:g.140105788C>T, NG_061559.1:g.360C>G, NG_061559.1:g.360C>T, NR_026705.1:n.45C>G, NR_026705.1:n.45C>T

Select item 121916856816.

rs1219168568 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:140726174 (GRCh38)
5:140105759 (GRCh37)
Canonical SPDI:: NC_000005.10:140726173:A:G
Gene:: VTRNA1-3 (Varview), LOC105378198 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000005.10:g.140726174A>G, NC_000005.9:g.140105759A>G, NG_061559.1:g.331A>G, NR_026705.1:n.16A>G

Select item 121006049017.

rs1210060490 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:140726226 (GRCh38)
5:140105811 (GRCh37)
Canonical SPDI:: NC_000005.10:140726225:C:T
Gene:: VTRNA1-3 (Varview), LOC105378198 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000023/6 (TOPMED)
HGVS:: NC_000005.10:g.140726226C>T, NC_000005.9:g.140105811C>T, NG_061559.1:g.383C>T, NR_026705.1:n.68C>T

Select item 119960424018.

rs1199604240 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:140726222 (GRCh38)
5:140105807 (GRCh37)
Canonical SPDI:: NC_000005.10:140726221:C:T
Gene:: VTRNA1-3 (Varview), LOC105378198 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.140726222C>T, NC_000005.9:g.140105807C>T, NG_061559.1:g.379C>T, NR_026705.1:n.64C>T

Select item 102018726419.

rs1020187264 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 5:140726159 (GRCh38)
5:140105744 (GRCh37)
Canonical SPDI:: NC_000005.10:140726158:G:T
Gene:: VTRNA1-3 (Varview), LOC105378198 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.140726159G>T, NC_000005.9:g.140105744G>T, NG_061559.1:g.316G>T, NR_026705.1:n.1G>T

Select item 97948100320.

rs979481003 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 5:140726189 (GRCh38)
5:140105774 (GRCh37)
Canonical SPDI:: NC_000005.10:140726188:T:A
Gene:: VTRNA1-3 (Varview), LOC105378198 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000019/5 (TOPMED)
HGVS:: NC_000005.10:g.140726189T>A, NC_000005.9:g.140105774T>A, NG_061559.1:g.346T>A, NR_026705.1:n.31T>A