SNP Links for Nucleotide (Select 224177487) - SNP

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Links from Nucleotide

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Select item 14895672761.

rs1489567276 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:87135970 (GRCh38)
1:87601653 (GRCh37)
Canonical SPDI:: NC_000001.11:87135969:A:G
Gene:: LINC01140 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.87135970A>G, NC_000001.10:g.87601653A>G, NR_026985.1:n.2645A>G, NR_026986.1:n.2445A>G, NR_026987.1:n.2438A>G, NR_026988.1:n.2341A>G

Select item 14872372162.

rs1487237216 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:87134869 (GRCh38)
1:87600552 (GRCh37)
Canonical SPDI:: NC_000001.11:87134868:A:T
Gene:: LINC01140 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.87134869A>T, NC_000001.10:g.87600552A>T, NR_026985.1:n.1544A>T, NR_026986.1:n.1344A>T, NR_026987.1:n.1337A>T, NR_026988.1:n.1240A>T

Select item 14857981543.

rs1485798154 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:87135769 (GRCh38)
1:87601452 (GRCh37)
Canonical SPDI:: NC_000001.11:87135768:G:C
Gene:: LINC01140 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.87135769G>C, NC_000001.10:g.87601452G>C, NR_026985.1:n.2444G>C, NR_026986.1:n.2244G>C, NR_026987.1:n.2237G>C, NR_026988.1:n.2140G>C

Select item 14857460914.

rs1485746091 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:87134591 (GRCh38)
1:87600274 (GRCh37)
Canonical SPDI:: NC_000001.11:87134590:G:C
Gene:: LINC01140 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.87134591G>C, NC_000001.10:g.87600274G>C, NR_026985.1:n.1266G>C, NR_026986.1:n.1066G>C, NR_026987.1:n.1059G>C, NR_026988.1:n.962G>C, NM_207357.1:c.*1430G>C

Select item 14853715355.

rs1485371535 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:87136280 (GRCh38)
1:87601963 (GRCh37)
Canonical SPDI:: NC_000001.11:87136279:G:A
Gene:: LINC01140 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.87136280G>A, NC_000001.10:g.87601963G>A, NR_026985.1:n.2955G>A, NR_026986.1:n.2755G>A, NR_026987.1:n.2748G>A, NR_026988.1:n.2651G>A

Select item 14852476566.

rs1485247656 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 1:87134753 (GRCh38)
1:87600437 (GRCh37)
Canonical SPDI:: NC_000001.11:87134753:T:TT
Gene:: LINC01140 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000312/2 (1000Genomes)
HGVS:: NC_000001.11:g.87134754dup, NC_000001.10:g.87600437dup, NR_026985.1:n.1429dup, NR_026986.1:n.1229dup, NR_026987.1:n.1222dup, NR_026988.1:n.1125dup

Select item 14834262827.

rs1483426282 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:87136155 (GRCh38)
1:87601838 (GRCh37)
Canonical SPDI:: NC_000001.11:87136154:G:A
Gene:: LINC01140 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000001.11:g.87136155G>A, NC_000001.10:g.87601838G>A, NR_026985.1:n.2830G>A, NR_026986.1:n.2630G>A, NR_026987.1:n.2623G>A, NR_026988.1:n.2526G>A

Select item 14832783418.

rs1483278341 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:87135662 (GRCh38)
1:87601345 (GRCh37)
Canonical SPDI:: NC_000001.11:87135661:T:C
Gene:: LINC01140 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000248/4 (TOMMO)
HGVS:: NC_000001.11:g.87135662T>C, NC_000001.10:g.87601345T>C, NR_026985.1:n.2337T>C, NR_026986.1:n.2137T>C, NR_026987.1:n.2130T>C, NR_026988.1:n.2033T>C

Select item 14812408969.

rs1481240896 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:87136110 (GRCh38)
1:87601793 (GRCh37)
Canonical SPDI:: NC_000001.11:87136109:T:C
Gene:: LINC01140 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.87136110T>C, NC_000001.10:g.87601793T>C, NR_026985.1:n.2785T>C, NR_026986.1:n.2585T>C, NR_026987.1:n.2578T>C, NR_026988.1:n.2481T>C

Select item 148048587310.

rs1480485873 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:87135066 (GRCh38)
1:87600749 (GRCh37)
Canonical SPDI:: NC_000001.11:87135065:C:T
Gene:: LINC01140 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000023/6 (TOPMED)
T=0.000106/2 (TOMMO)
T=0.004107/12 (KOREAN)
T=0.004367/8 (Korea1K)
HGVS:: NC_000001.11:g.87135066C>T, NC_000001.10:g.87600749C>T, NR_026985.1:n.1741C>T, NR_026986.1:n.1541C>T, NR_026987.1:n.1534C>T, NR_026988.1:n.1437C>T

Select item 148012532911.

rs1480125329 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 1:87134173 (GRCh38)
1:87599856 (GRCh37)
Canonical SPDI:: NC_000001.11:87134172:C:
Gene:: LINC01140 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.87134173del, NC_000001.10:g.87599856del, NR_026985.1:n.848del, NR_026986.1:n.648del, NR_026987.1:n.641del, NR_026988.1:n.544del, NM_207357.1:c.*1012del

Select item 147893815712.

rs1478938157 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:87132113 (GRCh38)
1:87597796 (GRCh37)
Canonical SPDI:: NC_000001.11:87132112:G:A
Gene:: LINC01140 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency
MAF:: A=0.000014/2 (GnomAD_exomes)
HGVS:: NC_000001.11:g.87132113G>A, NC_000001.10:g.87597796G>A, NR_026985.1:n.188G>A, NR_026986.1:n.188G>A, NR_026987.1:n.188G>A, NM_207357.1:c.28G>A

Select item 147700388813.

rs1477003888 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:87136506 (GRCh38)
1:87602189 (GRCh37)
Canonical SPDI:: NC_000001.11:87136505:A:C
Gene:: LINC01140 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
HGVS:: NC_000001.11:g.87136506A>C, NC_000001.10:g.87602189A>C, NR_026985.1:n.3181A>C, NR_026986.1:n.2981A>C, NR_026987.1:n.2974A>C, NR_026988.1:n.2877A>C

Select item 147692387814.

rs1476923878 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:87134119 (GRCh38)
1:87599802 (GRCh37)
Canonical SPDI:: NC_000001.11:87134118:A:G
Gene:: LINC01140 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.87134119A>G, NC_000001.10:g.87599802A>G, NR_026985.1:n.794A>G, NR_026986.1:n.594A>G, NR_026987.1:n.587A>G, NR_026988.1:n.490A>G, NM_207357.1:c.*958A>G

Select item 147671811415.

rs1476718114 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 1:87134543 (GRCh38)
1:87600227 (GRCh37)
Canonical SPDI:: NC_000001.11:87134543:T:TT
Gene:: LINC01140 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
T=0.000029/4 (GnomAD)
T=0.00003/8 (TOPMED)
HGVS:: NC_000001.11:g.87134544dup, NC_000001.10:g.87600227dup, NR_026985.1:n.1219dup, NR_026986.1:n.1019dup, NR_026987.1:n.1012dup, NR_026988.1:n.915dup, NM_207357.1:c.*1383dup

Select item 147529036016.

rs1475290360 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:87135651 (GRCh38)
1:87601334 (GRCh37)
Canonical SPDI:: NC_000001.11:87135650:G:A
Gene:: LINC01140 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.87135651G>A, NC_000001.10:g.87601334G>A, NR_026985.1:n.2326G>A, NR_026986.1:n.2126G>A, NR_026987.1:n.2119G>A, NR_026988.1:n.2022G>A

Select item 147496704217.

rs1474967042 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 1:87135176 (GRCh38)
1:87600859 (GRCh37)
Canonical SPDI:: NC_000001.11:87135175:GG:G
Gene:: LINC01140 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.87135177del, NC_000001.10:g.87600860del, NR_026985.1:n.1852del, NR_026986.1:n.1652del, NR_026987.1:n.1645del, NR_026988.1:n.1548del

Select item 147470408918.

rs1474704089 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:87132085 (GRCh38)
1:87597768 (GRCh37)
Canonical SPDI:: NC_000001.11:87132084:G:T
Gene:: LINC01140 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000007/1 (GnomAD_exomes)
T=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.87132085G>T, NC_000001.10:g.87597768G>T, NR_026985.1:n.160G>T, NR_026986.1:n.160G>T, NR_026987.1:n.160G>T, NM_207357.1:c.-1G>T

Select item 147445616019.

rs1474456160 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:87136612 (GRCh38)
1:87602295 (GRCh37)
Canonical SPDI:: NC_000001.11:87136611:C:G
Gene:: LINC01140 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.87136612C>G, NC_000001.10:g.87602295C>G, NR_026985.1:n.3287C>G, NR_026986.1:n.3087C>G, NR_026987.1:n.3080C>G, NR_026988.1:n.2983C>G

Select item 147217071220.

rs1472170712 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:87136002 (GRCh38)
1:87601685 (GRCh37)
Canonical SPDI:: NC_000001.11:87136001:A:C
Gene:: LINC01140 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
HGVS:: NC_000001.11:g.87136002A>C, NC_000001.10:g.87601685A>C, NR_026985.1:n.2677A>C, NR_026986.1:n.2477A>C, NR_026987.1:n.2470A>C, NR_026988.1:n.2373A>C

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