SNP Links for Nucleotide (Select 224967135) - SNP

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Links from Nucleotide

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Select item 14908646771.

rs1490864677 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:1587884 (GRCh38)
7:1627520 (GRCh37)
Canonical SPDI:: NC_000007.14:1587883:A:G
Gene:: PSMG3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000007.14:g.1587884A>G, NC_000007.13:g.1627520A>G, NR_021487.2:n.2118A>G, NR_027329.1:n.4067A>G, NR_027328.1:n.3959A>G

Select item 14902848032.

rs1490284803 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:1585030 (GRCh38)
7:1624666 (GRCh37)
Canonical SPDI:: NC_000007.14:1585029:C:T
Gene:: PSMG3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000015/4 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000007.14:g.1585030C>T, NC_000007.13:g.1624666C>T, NR_021487.2:n.1467C>T, NR_027329.1:n.1213C>T, NR_027328.1:n.1105C>T

Select item 14901020943.

rs1490102094 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 7:1570486 (GRCh38)
7:1610122 (GRCh37)
Canonical SPDI:: NC_000007.14:1570485:A:T
Gene:: PSMG3 (Varview), PSMG3-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000007.14:g.1570486A>T, NC_000007.13:g.1610122A>T, NR_021487.2:n.414A>T

Select item 14900498024.

rs1490049802 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:1588706 (GRCh38)
7:1628342 (GRCh37)
Canonical SPDI:: NC_000007.14:1588705:T:C
Gene:: PSMG3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.1588706T>C, NC_000007.13:g.1628342T>C, NR_021487.2:n.2940T>C, NR_027329.1:n.4889T>C, NR_027328.1:n.4781T>C

Select item 14897214185.

rs1489721418 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 7:1570464 (GRCh38)
7:1610100 (GRCh37)
Canonical SPDI:: NC_000007.14:1570463:C:A,NC_000007.14:1570463:C:T
Gene:: PSMG3 (Varview), PSMG3-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000007.14:g.1570464C>A, NC_000007.14:g.1570464C>T, NC_000007.13:g.1610100C>A, NC_000007.13:g.1610100C>T, NR_021487.2:n.392C>A, NR_021487.2:n.392C>T

Select item 14895656796.

rs1489565679 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:1589299 (GRCh38)
7:1628935 (GRCh37)
Canonical SPDI:: NC_000007.14:1589298:T:C
Gene:: PSMG3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.1589299T>C, NC_000007.13:g.1628935T>C, NR_021487.2:n.3533T>C, NR_027329.1:n.5482T>C, NR_027328.1:n.5374T>C

Select item 14886941797.

rs1488694179 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:1570417 (GRCh38)
7:1610053 (GRCh37)
Canonical SPDI:: NC_000007.14:1570416:A:G
Gene:: PSMG3 (Varview), PSMG3-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.1570417A>G, NC_000007.13:g.1610053A>G, NR_021487.2:n.345A>G

Select item 14885575208.

rs1488557520 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 7:1587894 (GRCh38)
7:1627530 (GRCh37)
Canonical SPDI:: NC_000007.14:1587893:C:G,NC_000007.14:1587893:C:T
Gene:: PSMG3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
G=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000007.14:g.1587894C>G, NC_000007.14:g.1587894C>T, NC_000007.13:g.1627530C>G, NC_000007.13:g.1627530C>T, NR_021487.2:n.2128C>G, NR_021487.2:n.2128C>T, NR_027329.1:n.4077C>G, NR_027329.1:n.4077C>T, NR_027328.1:n.3969C>G, NR_027328.1:n.3969C>T

Select item 14870821129.

rs1487082112 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:1589032 (GRCh38)
7:1628668 (GRCh37)
Canonical SPDI:: NC_000007.14:1589031:C:T
Gene:: PSMG3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.1589032C>T, NC_000007.13:g.1628668C>T, NR_021487.2:n.3266C>T, NR_027329.1:n.5215C>T, NR_027328.1:n.5107C>T

Select item 148693964210.

rs1486939642 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:1585146 (GRCh38)
7:1624782 (GRCh37)
Canonical SPDI:: NC_000007.14:1585145:G:A
Gene:: PSMG3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000007.14:g.1585146G>A, NC_000007.13:g.1624782G>A, NR_021487.2:n.1583G>A, NR_027329.1:n.1329G>A, NR_027328.1:n.1221G>A

Select item 148568293711.

rs1485682937 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 7:1584392 (GRCh38)
7:1624028 (GRCh37)
Canonical SPDI:: NC_000007.14:1584391:G:A,NC_000007.14:1584391:G:T
Gene:: PSMG3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000007.14:g.1584392G>A, NC_000007.14:g.1584392G>T, NC_000007.13:g.1624028G>A, NC_000007.13:g.1624028G>T, NR_021487.2:n.829G>A, NR_021487.2:n.829G>T, NR_027329.1:n.575G>A, NR_027329.1:n.575G>T, NR_027328.1:n.467G>A, NR_027328.1:n.467G>T

Select item 148543170212.

rs1485431702 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 7:1587946 (GRCh38)
7:1627582 (GRCh37)
Canonical SPDI:: NC_000007.14:1587945:A:G,NC_000007.14:1587945:A:T
Gene:: PSMG3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
T=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000007.14:g.1587946A>G, NC_000007.14:g.1587946A>T, NC_000007.13:g.1627582A>G, NC_000007.13:g.1627582A>T, NR_021487.2:n.2180A>G, NR_021487.2:n.2180A>T, NR_027329.1:n.4129A>G, NR_027329.1:n.4129A>T, NR_027328.1:n.4021A>G, NR_027328.1:n.4021A>T

Select item 148409725113.

rs1484097251 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:1589243 (GRCh38)
7:1628879 (GRCh37)
Canonical SPDI:: NC_000007.14:1589242:A:G
Gene:: PSMG3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.1589243A>G, NC_000007.13:g.1628879A>G, NR_021487.2:n.3477A>G, NR_027329.1:n.5426A>G, NR_027328.1:n.5318A>G

Select item 148324454214.

rs1483244542 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 7:1589240 (GRCh38)
7:1628876 (GRCh37)
Canonical SPDI:: NC_000007.14:1589239:T:A,NC_000007.14:1589239:T:G
Gene:: PSMG3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
G=0.001638/3 (Korea1K)
HGVS:: NC_000007.14:g.1589240T>A, NC_000007.14:g.1589240T>G, NC_000007.13:g.1628876T>A, NC_000007.13:g.1628876T>G, NR_021487.2:n.3474T>A, NR_021487.2:n.3474T>G, NR_027329.1:n.5423T>A, NR_027329.1:n.5423T>G, NR_027328.1:n.5315T>A, NR_027328.1:n.5315T>G

Select item 148264889415.

rs1482648894 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:1584758 (GRCh38)
7:1624394 (GRCh37)
Canonical SPDI:: NC_000007.14:1584757:G:A
Gene:: PSMG3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.1584758G>A, NC_000007.13:g.1624394G>A, NR_021487.2:n.1195G>A, NR_027329.1:n.941G>A, NR_027328.1:n.833G>A

Select item 148250490916.

rs1482504909 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 7:1585024 (GRCh38)
7:1624660 (GRCh37)
Canonical SPDI:: NC_000007.14:1585023:A:T
Gene:: PSMG3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.1585024A>T, NC_000007.13:g.1624660A>T, NR_021487.2:n.1461A>T, NR_027329.1:n.1207A>T, NR_027328.1:n.1099A>T

Select item 148220622217.

rs1482206222 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:1588924 (GRCh38)
7:1628560 (GRCh37)
Canonical SPDI:: NC_000007.14:1588923:A:G
Gene:: PSMG3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000224/1 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000007.14:g.1588924A>G, NC_000007.13:g.1628560A>G, NR_021487.2:n.3158A>G, NR_027329.1:n.5107A>G, NR_027328.1:n.4999A>G

Select item 148155020618.

rs1481550206 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:1585593 (GRCh38)
7:1625229 (GRCh37)
Canonical SPDI:: NC_000007.14:1585592:T:C
Gene:: PSMG3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000007.14:g.1585593T>C, NC_000007.13:g.1625229T>C, NR_021487.2:n.2030T>C, NR_027329.1:n.1776T>C, NR_027328.1:n.1668T>C

Select item 148081761819.

rs1480817618 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:1589472 (GRCh38)
7:1629108 (GRCh37)
Canonical SPDI:: NC_000007.14:1589471:C:T
Gene:: PSMG3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.1589472C>T, NC_000007.13:g.1629108C>T, NR_021487.2:n.3706C>T, NR_027329.1:n.5655C>T, NR_027328.1:n.5547C>T

Select item 148064104920.

rs1480641049 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:1588588 (GRCh38)
7:1628224 (GRCh37)
Canonical SPDI:: NC_000007.14:1588587:G:A
Gene:: PSMG3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.1588588G>A, NC_000007.13:g.1628224G>A, NR_021487.2:n.2822G>A, NR_027329.1:n.4771G>A, NR_027328.1:n.4663G>A