SNP Links for Nucleotide (Select 261598991) - SNP

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Links from Nucleotide

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Select item 14904973601.

rs1490497360 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:87343483 (GRCh38)
10:89103240 (GRCh37)
Canonical SPDI:: NC_000010.11:87343482:A:G
Gene:: LINC00863 (Varview), NUTM2A-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.87343483A>G, NC_000010.10:g.89103240A>G, NR_029408.1:n.1073A>G

Select item 14897068442.

rs1489706844 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 10:87342597 (GRCh38)
10:89102354 (GRCh37)
Canonical SPDI:: NC_000010.11:87342596:C:G
Gene:: LINC00863 (Varview), NUTM2A-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000010.11:g.87342597C>G, NC_000010.10:g.89102354C>G, NR_029408.1:n.187C>G

Select item 14892690983.

rs1489269098 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:87342535 (GRCh38)
10:89102292 (GRCh37)
Canonical SPDI:: NC_000010.11:87342534:C:T
Gene:: LINC00863 (Varview), NUTM2A-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.87342535C>T, NC_000010.10:g.89102292C>T, NR_029408.1:n.125C>T, NR_024397.1:n.24G>A

Select item 14860079604.

rs1486007960 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:87343324 (GRCh38)
10:89103081 (GRCh37)
Canonical SPDI:: NC_000010.11:87343323:T:C
Gene:: LINC00863 (Varview), NUTM2A-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: T=0.5/1 (SGDP_PRJ)
HGVS:: NC_000010.11:g.87343324T>C, NC_000010.10:g.89103081T>C, NR_029408.1:n.914T>C

Select item 14847325725.

rs1484732572 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 10:87342434 (GRCh38)
10:89102191 (GRCh37)
Canonical SPDI:: NC_000010.11:87342433:G:C
Gene:: LINC00863 (Varview), NUTM2A-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.87342434G>C, NC_000010.10:g.89102191G>C, NR_029408.1:n.24G>C, NR_024397.1:n.125C>G

Select item 14845146796.

rs1484514679 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 10:87342701 (GRCh38)
10:89102458 (GRCh37)
Canonical SPDI:: NC_000010.11:87342700:G:C
Gene:: LINC00863 (Varview), NUTM2A-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.87342701G>C, NC_000010.10:g.89102458G>C, NR_029408.1:n.291G>C

Select item 14843690727.

rs1484369072 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 10:87342791 (GRCh38)
10:89102548 (GRCh37)
Canonical SPDI:: NC_000010.11:87342790:C:A,NC_000010.11:87342790:C:T
Gene:: LINC00863 (Varview), NUTM2A-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000010.11:g.87342791C>A, NC_000010.11:g.87342791C>T, NC_000010.10:g.89102548C>A, NC_000010.10:g.89102548C>T, NR_135292.1:n.56C>A, NR_135292.1:n.56C>T, NR_029408.1:n.381C>A, NR_029408.1:n.381C>T

Select item 14841944518.

rs1484194451 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 10:87343313 (GRCh38)
10:89103070 (GRCh37)
Canonical SPDI:: NC_000010.11:87343312:C:G,NC_000010.11:87343312:C:T
Gene:: LINC00863 (Varview), NUTM2A-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000010.11:g.87343313C>G, NC_000010.11:g.87343313C>T, NC_000010.10:g.89103070C>G, NC_000010.10:g.89103070C>T, NR_029408.1:n.903C>G, NR_029408.1:n.903C>T

Select item 14828335929.

rs1482833592 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:87343452 (GRCh38)
10:89103209 (GRCh37)
Canonical SPDI:: NC_000010.11:87343451:G:A
Gene:: LINC00863 (Varview), NUTM2A-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.87343452G>A, NC_000010.10:g.89103209G>A, NR_029408.1:n.1042G>A

Select item 148090618210.

rs1480906182 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:87342919 (GRCh38)
10:89102676 (GRCh37)
Canonical SPDI:: NC_000010.11:87342918:C:T
Gene:: LINC00863 (Varview), NUTM2A-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.87342919C>T, NC_000010.10:g.89102676C>T, NR_135292.1:n.184C>T, NR_029408.1:n.509C>T

Select item 148076834511.

rs1480768345 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:87343044 (GRCh38)
10:89102801 (GRCh37)
Canonical SPDI:: NC_000010.11:87343043:T:C
Gene:: LINC00863 (Varview), NUTM2A-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000010.11:g.87343044T>C, NC_000010.10:g.89102801T>C, NR_135292.1:n.309T>C, NR_029408.1:n.634T>C

Select item 148067994912.

rs1480679949 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:87343566 (GRCh38)
10:89103323 (GRCh37)
Canonical SPDI:: NC_000010.11:87343565:T:C
Gene:: LINC00863 (Varview), NUTM2A-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.87343566T>C, NC_000010.10:g.89103323T>C, NR_029408.1:n.1156T>C

Select item 147651346213.

rs1476513462 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:87342622 (GRCh38)
10:89102379 (GRCh37)
Canonical SPDI:: NC_000010.11:87342621:T:C
Gene:: LINC00863 (Varview), NUTM2A-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000019/5 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000010.11:g.87342622T>C, NC_000010.10:g.89102379T>C, NR_029408.1:n.212T>C

Select item 147553398014.

rs1475533980 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 10:87343178 (GRCh38)
10:89102935 (GRCh37)
Canonical SPDI:: NC_000010.11:87343177:CC:C
Gene:: LINC00863 (Varview), NUTM2A-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.87343179del, NC_000010.10:g.89102936del, NR_029408.1:n.769del

Select item 147439800615.

rs1474398006 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:87342962 (GRCh38)
10:89102719 (GRCh37)
Canonical SPDI:: NC_000010.11:87342961:G:T
Gene:: LINC00863 (Varview), NUTM2A-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.87342962G>T, NC_000010.10:g.89102719G>T, NR_135292.1:n.227G>T, NR_029408.1:n.552G>T

Select item 147241329616.

rs1472413296 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:87343378 (GRCh38)
10:89103135 (GRCh37)
Canonical SPDI:: NC_000010.11:87343377:A:G
Gene:: LINC00863 (Varview), NUTM2A-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.87343378A>G, NC_000010.10:g.89103135A>G, NR_029408.1:n.968A>G

Select item 147204383417.

rs1472043834 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:87342613 (GRCh38)
10:89102370 (GRCh37)
Canonical SPDI:: NC_000010.11:87342612:G:A
Gene:: LINC00863 (Varview), NUTM2A-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000086/12 (GnomAD)
A=0.000132/35 (TOPMED)
A=0.000343/1 (KOREAN)
A=0.000425/7 (TOMMO)
A=0.000564/1 (Korea1K)
HGVS:: NC_000010.11:g.87342613G>A, NC_000010.10:g.89102370G>A, NR_029408.1:n.203G>A

Select item 147063089218.

rs1470630892 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 10:87343194 (GRCh38)
10:89102951 (GRCh37)
Canonical SPDI:: NC_000010.11:87343193:C:A,NC_000010.11:87343193:C:T
Gene:: LINC00863 (Varview), NUTM2A-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000026/7 (TOPMED)
HGVS:: NC_000010.11:g.87343194C>A, NC_000010.11:g.87343194C>T, NC_000010.10:g.89102951C>A, NC_000010.10:g.89102951C>T, NR_029408.1:n.784C>A, NR_029408.1:n.784C>T

Select item 147031300519.

rs1470313005 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 10:87342954 (GRCh38)
10:89102711 (GRCh37)
Canonical SPDI:: NC_000010.11:87342953:GGGG:GGG
Gene:: LINC00863 (Varview), NUTM2A-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: GGG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.87342957del, NC_000010.10:g.89102714del, NR_135292.1:n.222del, NR_029408.1:n.547del

Select item 146772283120.

rs1467722831 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 10:87342746 (GRCh38)
10:89102503 (GRCh37)
Canonical SPDI:: NC_000010.11:87342745:G:A,NC_000010.11:87342745:G:C
Gene:: LINC00863 (Varview), NUTM2A-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000010.11:g.87342746G>A, NC_000010.11:g.87342746G>C, NC_000010.10:g.89102503G>A, NC_000010.10:g.89102503G>C, NR_135292.1:n.11G>A, NR_135292.1:n.11G>C, NR_029408.1:n.336G>A, NR_029408.1:n.336G>C