SNP Links for Nucleotide (Select 262205807) - SNP

Links from Nucleotide

Items: 19

Select item 14643840181.

rs1464384018 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:160404788 (GRCh38)
3:160122576 (GRCh37)
Canonical SPDI:: NC_000003.12:160404787:T:C
Gene:: SMC4 (Varview), MIR15B (Varview), MIR16-2 (Varview), TRIM59-IFT80 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.160404788T>C, NC_000003.11:g.160122576T>C, NG_050987.1:g.10485T>C, NR_029525.1:n.44T>C

Select item 13844738322.

rs1384473832 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:160404825 (GRCh38)
3:160122613 (GRCh37)
Canonical SPDI:: NC_000003.12:160404824:C:T
Gene:: SMC4 (Varview), MIR15B (Varview), MIR16-2 (Varview), TRIM59-IFT80 (Varview)
Functional Consequence:: 500B_downstream_variant,non_coding_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000003.12:g.160404825C>T, NC_000003.11:g.160122613C>T, NG_050987.1:g.10522C>T, NR_029525.1:n.81C>T

Select item 13417988643.

rs1341798864 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 3:160404818 (GRCh38)
3:160122606 (GRCh37)
Canonical SPDI:: NC_000003.12:160404817:A:C
Gene:: SMC4 (Varview), MIR15B (Varview), MIR16-2 (Varview), TRIM59-IFT80 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.160404818A>C, NC_000003.11:g.160122606A>C, NG_050987.1:g.10515A>C, NR_029525.1:n.74A>C

Select item 12585742364.

rs1258574236 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 3:160404762 (GRCh38)
3:160122550 (GRCh37)
Canonical SPDI:: NC_000003.12:160404761:C:A,NC_000003.12:160404761:C:T
Gene:: SMC4 (Varview), MIR15B (Varview), MIR16-2 (Varview), TRIM59-IFT80 (Varview)
Functional Consequence:: 500B_downstream_variant,non_coding_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.160404762C>A, NC_000003.12:g.160404762C>T, NC_000003.11:g.160122550C>A, NC_000003.11:g.160122550C>T, NG_050987.1:g.10459C>A, NG_050987.1:g.10459C>T, NR_029525.1:n.18C>A, NR_029525.1:n.18C>T

Select item 12585609315.

rs1258560931 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:160404770 (GRCh38)
3:160122558 (GRCh37)
Canonical SPDI:: NC_000003.12:160404769:T:C
Gene:: SMC4 (Varview), MIR15B (Varview), MIR16-2 (Varview), TRIM59-IFT80 (Varview)
Functional Consequence:: 500B_downstream_variant,non_coding_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.160404770T>C, NC_000003.11:g.160122558T>C, NG_050987.1:g.10467T>C, NR_029525.1:n.26T>C

Select item 12544268076.

rs1254426807 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:160404754 (GRCh38)
3:160122542 (GRCh37)
Canonical SPDI:: NC_000003.12:160404753:T:C
Gene:: SMC4 (Varview), MIR15B (Varview), MIR16-2 (Varview), TRIM59-IFT80 (Varview)
Functional Consequence:: 500B_downstream_variant,non_coding_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000003.12:g.160404754T>C, NC_000003.11:g.160122542T>C, NG_050987.1:g.10451T>C, NR_029525.1:n.10T>C

Select item 11990470647.

rs1199047064 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:160404751 (GRCh38)
3:160122539 (GRCh37)
Canonical SPDI:: NC_000003.12:160404750:C:T
Gene:: SMC4 (Varview), MIR15B (Varview), MIR16-2 (Varview), TRIM59-IFT80 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000003.12:g.160404751C>T, NC_000003.11:g.160122539C>T, NG_050987.1:g.10448C>T, NR_029525.1:n.7C>T

Select item 11930581598.

rs1193058159 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 3:160404765 (GRCh38)
3:160122553 (GRCh37)
Canonical SPDI:: NC_000003.12:160404764:AAA:AA
Gene:: SMC4 (Varview), MIR15B (Varview), MIR16-2 (Varview), TRIM59-IFT80 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant,non_coding_transcript_variant
HGVS:: NC_000003.12:g.160404767del, NC_000003.11:g.160122555del, NG_050987.1:g.10464del, NR_029525.1:n.23del

Select item 7816593999.

rs781659399 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:160404750 (GRCh38)
3:160122538 (GRCh37)
Canonical SPDI:: NC_000003.12:160404749:A:G
Gene:: SMC4 (Varview), MIR15B (Varview), MIR16-2 (Varview), TRIM59-IFT80 (Varview)
Functional Consequence:: non_coding_transcript_variant,downstream_transcript_variant,intron_variant,500B_downstream_variant
Validated:: by frequency,by cluster
MAF:: G=0.000004/1 (GnomAD_exomes)
G=0.000009/1 (ExAC)
HGVS:: NC_000003.12:g.160404750A>G, NC_000003.11:g.160122538A>G, NG_050987.1:g.10447A>G, NR_029525.1:n.6A>G

Select item 77790045210.

rs777900452 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 3:160404775 (GRCh38)
3:160122563 (GRCh37)
Canonical SPDI:: NC_000003.12:160404774:G:A,NC_000003.12:160404774:G:C,NC_000003.12:160404774:G:T
Gene:: SMC4 (Varview), MIR15B (Varview), MIR16-2 (Varview), TRIM59-IFT80 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,non_coding_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.00002/5 (GnomAD_exomes)
A=0.000029/3 (ExAC)
HGVS:: NC_000003.12:g.160404775G>A, NC_000003.12:g.160404775G>C, NC_000003.12:g.160404775G>T, NC_000003.11:g.160122563G>A, NC_000003.11:g.160122563G>C, NC_000003.11:g.160122563G>T, NG_050987.1:g.10472G>A, NG_050987.1:g.10472G>C, NG_050987.1:g.10472G>T, NR_029525.1:n.31G>A, NR_029525.1:n.31G>C, NR_029525.1:n.31G>T

Select item 77536883311.

rs775368833 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 3:160404800 (GRCh38)
3:160122588 (GRCh37)
Canonical SPDI:: NC_000003.12:160404799:A:G,NC_000003.12:160404799:A:T
Gene:: SMC4 (Varview), MIR15B (Varview), MIR16-2 (Varview), TRIM59-IFT80 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,non_coding_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000087/2 (ALFA)
G=0.000004/1 (TOPMED)
G=0.00001/1 (ExAC)
G=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.160404800A>G, NC_000003.12:g.160404800A>T, NC_000003.11:g.160122588A>G, NC_000003.11:g.160122588A>T, NG_050987.1:g.10497A>G, NG_050987.1:g.10497A>T, NR_029525.1:n.56A>G, NR_029525.1:n.56A>T

Select item 77178697312.

rs771786973 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 3:160404785 (GRCh38)
3:160122573 (GRCh37)
Canonical SPDI:: NC_000003.12:160404784:A:C,NC_000003.12:160404784:A:G
Gene:: SMC4 (Varview), MIR15B (Varview), MIR16-2 (Varview), TRIM59-IFT80 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
C=0.000004/1 (TOPMED)
G=0.00001/1 (ExAC)
HGVS:: NC_000003.12:g.160404785A>C, NC_000003.12:g.160404785A>G, NC_000003.11:g.160122573A>C, NC_000003.11:g.160122573A>G, NG_050987.1:g.10482A>C, NG_050987.1:g.10482A>G, NR_029525.1:n.41A>C, NR_029525.1:n.41A>G

Select item 76878068413.

rs768780684 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 3:160404809 (GRCh38)
3:160122597 (GRCh37)
Canonical SPDI:: NC_000003.12:160404808:T:C,NC_000003.12:160404808:T:G
Gene:: SMC4 (Varview), MIR15B (Varview), MIR16-2 (Varview), TRIM59-IFT80 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.00001/1 (ExAC)
G=0.000011/3 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000003.12:g.160404809T>C, NC_000003.12:g.160404809T>G, NC_000003.11:g.160122597T>C, NC_000003.11:g.160122597T>G, NG_050987.1:g.10506T>C, NG_050987.1:g.10506T>G, NR_029525.1:n.65T>C, NR_029525.1:n.65T>G

Select item 75619998114.

rs756199981 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:160404774 (GRCh38)
3:160122562 (GRCh37)
Canonical SPDI:: NC_000003.12:160404773:C:T
Gene:: SMC4 (Varview), MIR15B (Varview), MIR16-2 (Varview), TRIM59-IFT80 (Varview)
Functional Consequence:: downstream_transcript_variant,non_coding_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000132/2 (ALFA)
T=0.00001/1 (ExAC)
T=0.000014/2 (GnomAD)
T=0.000223/1 (Estonian)
HGVS:: NC_000003.12:g.160404774C>T, NC_000003.11:g.160122562C>T, NG_050987.1:g.10471C>T, NR_029525.1:n.30C>T

Select item 74948806315.

rs749488063 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:160404784 (GRCh38)
3:160122572 (GRCh37)
Canonical SPDI:: NC_000003.12:160404783:T:C
Gene:: SMC4 (Varview), MIR15B (Varview), MIR16-2 (Varview), TRIM59-IFT80 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by cluster
MAF:: C=0.000004/1 (GnomAD_exomes)
C=0.00001/1 (ExAC)
HGVS:: NC_000003.12:g.160404784T>C, NC_000003.11:g.160122572T>C, NG_050987.1:g.10481T>C, NR_029525.1:n.40T>C

Select item 74920421816.

rs749204218 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:160404786 (GRCh38)
3:160122574 (GRCh37)
Canonical SPDI:: NC_000003.12:160404785:T:C
Gene:: SMC4 (Varview), MIR15B (Varview), MIR16-2 (Varview), TRIM59-IFT80 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
T=0.5/1 (SGDP_PRJ)
HGVS:: NC_000003.12:g.160404786T>C, NC_000003.11:g.160122574T>C, NG_050987.1:g.10483T>C, NR_029525.1:n.42T>C

Select item 74828913517.

rs748289135 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:160404763 (GRCh38)
3:160122551 (GRCh37)
Canonical SPDI:: NC_000003.12:160404762:G:A
Gene:: SMC4 (Varview), MIR15B (Varview), MIR16-2 (Varview), TRIM59-IFT80 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000029/4 (GnomAD)
A=0.000038/4 (ExAC)
A=0.000049/12 (GnomAD_exomes)
A=0.000053/14 (TOPMED)
HGVS:: NC_000003.12:g.160404763G>A, NC_000003.11:g.160122551G>A, NG_050987.1:g.10460G>A, NR_029525.1:n.19G>A

Select item 74699223918.

rs746992239 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 3:160404798 (GRCh38)
3:160122587 (GRCh37)
Canonical SPDI:: NC_000003.12:160404798:AA:AAA
Gene:: SMC4 (Varview), MIR15B (Varview), MIR16-2 (Varview), TRIM59-IFT80 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,500B_downstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAA=0.000051/1 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000007/1 (GnomAD)
A=0.00001/1 (ExAC)
HGVS:: NC_000003.12:g.160404800dup, NC_000003.11:g.160122588dup, NG_050987.1:g.10497dup, NR_029525.1:n.56dup

Select item 37320234119.

rs373202341 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:160404806 (GRCh38)
3:160122594 (GRCh37)
Canonical SPDI:: NC_000003.12:160404805:C:T
Gene:: SMC4 (Varview), MIR15B (Varview), MIR16-2 (Varview), TRIM59-IFT80 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000013/3 (GnomAD_exomes)
T=0.000019/5 (TOPMED)
T=0.000021/2 (ExAC)
T=0.000021/3 (GnomAD)
T=0.000097/1 (GoESP)
HGVS:: NC_000003.12:g.160404806C>T, NC_000003.11:g.160122594C>T, NG_050987.1:g.10503C>T, NR_029525.1:n.62C>T

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Links from Nucleotide

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