SNP Links for Nucleotide (Select 262206155) - SNP

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Links from Nucleotide

Items: 1 to 20 of 27

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Select item 14371710811.

rs1437171081 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:28888953 (GRCh38)
9:28888951 (GRCh37)
Canonical SPDI:: NC_000009.12:28888952:C:T
Gene:: LINGO2 (Varview), MIR873 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.28888953C>T, NC_000009.11:g.28888951C>T, NR_030618.1:n.3G>A

Select item 14292309412.

rs1429230941 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 9:28888912 (GRCh38)
9:28888910 (GRCh37)
Canonical SPDI:: NC_000009.12:28888911:G:A,NC_000009.12:28888911:G:T
Gene:: LINGO2 (Varview), MIR873 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
T=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.28888912G>A, NC_000009.12:g.28888912G>T, NC_000009.11:g.28888910G>A, NC_000009.11:g.28888910G>T, NR_030618.1:n.44C>T, NR_030618.1:n.44C>A

Select item 13976549153.

rs1397654915 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:28888919 (GRCh38)
9:28888917 (GRCh37)
Canonical SPDI:: NC_000009.12:28888918:T:C
Gene:: LINGO2 (Varview), MIR873 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000009.12:g.28888919T>C, NC_000009.11:g.28888917T>C, NR_030618.1:n.37A>G

Select item 13393960734.

rs1339396073 [Homo sapiens]

Variant type:: DELINS
Alleles:: TCAGTCTCCTGTTCATTTTCAATAGGAGACTCA>- [Show Flanks]
Chromosome:: 9:28888902 (GRCh38)
9:28888900 (GRCh37)
Canonical SPDI:: NC_000009.12:28888896:ACTCATCAGTCTCCTGTTCATTTTCAATAGGAGACTCA:ACTCA
Gene:: LINGO2 (Varview), MIR873 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: ACTCA=0./0 (ALFA)
-=0.000019/5 (TOPMED)
HGVS:: NC_000009.12:g.28888902_28888934del, NC_000009.11:g.28888900_28888932del, NR_030618.1:n.27_59del

Select item 13270597225.

rs1327059722 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:28888923 (GRCh38)
9:28888921 (GRCh37)
Canonical SPDI:: NC_000009.12:28888922:A:G
Gene:: LINGO2 (Varview), MIR873 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: G=0.000016/4 (GnomAD_exomes)
HGVS:: NC_000009.12:g.28888923A>G, NC_000009.11:g.28888921A>G, NR_030618.1:n.33T>C

Select item 12738462386.

rs1273846238 [Homo sapiens]

Variant type:: DELINS
Alleles:: TCA>- [Show Flanks]
Chromosome:: 9:28888902 (GRCh38)
9:28888900 (GRCh37)
Canonical SPDI:: NC_000009.12:28888898:TCATCA:TCA
Gene:: LINGO2 (Varview), MIR873 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TCATCA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.28888899TCA[1], NC_000009.11:g.28888897TCA[1], NR_030618.1:n.52TGA[1]

Select item 12479996957.

rs1247999695 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:28888893 (GRCh38)
9:28888891 (GRCh37)
Canonical SPDI:: NC_000009.12:28888892:G:A,NC_000009.12:28888892:G:C
Gene:: LINGO2 (Varview), MIR873 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000054/1 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000029/4 (GnomAD)
A=0.000223/1 (Estonian)
A=0.000248/4 (TOMMO)
HGVS:: NC_000009.12:g.28888893G>A, NC_000009.12:g.28888893G>C, NC_000009.11:g.28888891G>A, NC_000009.11:g.28888891G>C, NR_030618.1:n.63C>T, NR_030618.1:n.63C>G

Select item 11667959708.

rs1166795970 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 9:28888947 (GRCh38)
9:28888945 (GRCh37)
Canonical SPDI:: NC_000009.12:28888946:A:T
Gene:: LINGO2 (Varview), MIR873 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.28888947A>T, NC_000009.11:g.28888945A>T, NR_030618.1:n.9T>A

Select item 9462241679.

rs946224167 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:28888935 (GRCh38)
9:28888933 (GRCh37)
Canonical SPDI:: NC_000009.12:28888934:C:T
Gene:: LINGO2 (Varview), MIR873 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (GnomAD_exomes)
T=0.000026/7 (TOPMED)
HGVS:: NC_000009.12:g.28888935C>T, NC_000009.11:g.28888933C>T, NR_030618.1:n.21G>A

Select item 93603856110.

rs936038561 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 9:28888916 (GRCh38)
9:28888914 (GRCh37)
Canonical SPDI:: NC_000009.12:28888915:A:T
Gene:: LINGO2 (Varview), MIR873 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.00005/1 (ALFA)
HGVS:: NC_000009.12:g.28888916A>T, NC_000009.11:g.28888914A>T, NR_030618.1:n.40T>A

Select item 92194431311.

rs921944313 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 9:28888913 (GRCh38)
9:28888911 (GRCh37)
Canonical SPDI:: NC_000009.12:28888912:T:C,NC_000009.12:28888912:T:G
Gene:: LINGO2 (Varview), MIR873 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000028/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000023/6 (TOPMED)
HGVS:: NC_000009.12:g.28888913T>C, NC_000009.12:g.28888913T>G, NC_000009.11:g.28888911T>C, NC_000009.11:g.28888911T>G, NR_030618.1:n.43A>G, NR_030618.1:n.43A>C

Select item 91449254512.

rs914492545 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:28888887 (GRCh38)
9:28888885 (GRCh37)
Canonical SPDI:: NC_000009.12:28888886:G:A
Gene:: LINGO2 (Varview), MIR873 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.28888887G>A, NC_000009.11:g.28888885G>A, NR_030618.1:n.69C>T

Select item 89997900413.

rs899979004 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 9:28888934 (GRCh38)
9:28888932 (GRCh37)
Canonical SPDI:: NC_000009.12:28888933:A:T
Gene:: LINGO2 (Varview), MIR873 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.28888934A>T, NC_000009.11:g.28888932A>T, NR_030618.1:n.22T>A

Select item 89083470114.

rs890834701 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:28888917 (GRCh38)
9:28888915 (GRCh37)
Canonical SPDI:: NC_000009.12:28888916:T:A
Gene:: LINGO2 (Varview), MIR873 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.28888917T>A, NC_000009.11:g.28888915T>A, NR_030618.1:n.39A>T

Select item 77714395215.

rs777143952 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 9:28888943 (GRCh38)
9:28888941 (GRCh37)
Canonical SPDI:: NC_000009.12:28888942:T:A,NC_000009.12:28888942:T:G
Gene:: LINGO2 (Varview), MIR873 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000068/3 (ALFA)
A=0.000009/1 (ExAC)
A=0.000023/6 (TOPMED)
A=0.000036/5 (GnomAD)
HGVS:: NC_000009.12:g.28888943T>A, NC_000009.12:g.28888943T>G, NC_000009.11:g.28888941T>A, NC_000009.11:g.28888941T>G, NR_030618.1:n.13A>T, NR_030618.1:n.13A>C

Select item 77474106216.

rs774741062 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 9:28888888 (GRCh38)
9:28888886 (GRCh37)
Canonical SPDI:: NC_000009.12:28888887:T:A,NC_000009.12:28888887:T:C
Gene:: LINGO2 (Varview), MIR873 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by cluster
HGVS:: NC_000009.12:g.28888888T>A, NC_000009.12:g.28888888T>C, NC_000009.11:g.28888886T>A, NC_000009.11:g.28888886T>C, NR_030618.1:n.68A>T, NR_030618.1:n.68A>G

Select item 77340329417.

rs773403294 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:28888902 (GRCh38)
9:28888900 (GRCh37)
Canonical SPDI:: NC_000009.12:28888901:T:A
Gene:: LINGO2 (Varview), MIR873 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000009/1 (ExAC)
A=0.000023/6 (TOPMED)
A=0.000043/6 (GnomAD)
HGVS:: NC_000009.12:g.28888902T>A, NC_000009.11:g.28888900T>A, NR_030618.1:n.54A>T

Select item 76894834318.

rs768948343 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:28888881 (GRCh38)
9:28888879 (GRCh37)
Canonical SPDI:: NC_000009.12:28888880:G:A,NC_000009.12:28888880:G:C
Gene:: LINGO2 (Varview), MIR873 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: A=0.000007/1 (GnomAD)
A=0.000009/1 (ExAC)
HGVS:: NC_000009.12:g.28888881G>A, NC_000009.12:g.28888881G>C, NC_000009.11:g.28888879G>A, NC_000009.11:g.28888879G>C, NR_030618.1:n.75C>T, NR_030618.1:n.75C>G

Select item 76631231719.

rs766312317 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:28888918 (GRCh38)
9:28888916 (GRCh37)
Canonical SPDI:: NC_000009.12:28888917:T:C
Gene:: LINGO2 (Varview), MIR873 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: C=0.000009/1 (ExAC)
HGVS:: NC_000009.12:g.28888918T>C, NC_000009.11:g.28888916T>C, NR_030618.1:n.38A>G

Select item 76483002420.

rs764830024 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:28888928 (GRCh38)
9:28888926 (GRCh37)
Canonical SPDI:: NC_000009.12:28888927:A:G
Gene:: LINGO2 (Varview), MIR873 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
G=0.000008/2 (TOPMED)
G=0.000009/1 (ExAC)
G=0.000029/4 (GnomAD)
HGVS:: NC_000009.12:g.28888928A>G, NC_000009.11:g.28888926A>G, NR_030618.1:n.28T>C