SNP Links for Nucleotide (Select 262206205) - SNP

Links from Nucleotide

Items: 1 to 20 of 21

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Select item 14257740451.

rs1425774045 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: X:147259697 (GRCh38)
X:146341215 (GRCh37)
Canonical SPDI:: NC_000023.11:147259696:A:C
Gene:: MIR509-2 (Varview), MIR509-3 (Varview), LOC105373347 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000023.11:g.147259697A>C, NC_000023.10:g.146341215A>C, NW_004070890.2:g.2784088A>C, NR_030629.1:n.30T>G

Select item 13475421392.

rs1347542139 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:147259661 (GRCh38)
X:146341179 (GRCh37)
Canonical SPDI:: NC_000023.11:147259660:T:C
Gene:: MIR509-2 (Varview), MIR509-3 (Varview), LOC105373347 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.147259661T>C, NC_000023.10:g.146341179T>C, NW_004070890.2:g.2784052T>C, NR_030629.1:n.66A>G

Select item 13197500963.

rs1319750096 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:147259665 (GRCh38)
X:146341183 (GRCh37)
Canonical SPDI:: NC_000023.11:147259664:C:T
Gene:: MIR509-2 (Varview), MIR509-3 (Varview), LOC105373347 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.147259665C>T, NC_000023.10:g.146341183C>T, NW_004070890.2:g.2784056C>T, NR_030629.1:n.62G>A

Select item 12841948114.

rs1284194811 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:147259711 (GRCh38)
X:146341229 (GRCh37)
Canonical SPDI:: NC_000023.11:147259710:T:C
Gene:: MIR509-2 (Varview), MIR509-3 (Varview), LOC105373347 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000023/6 (TOPMED)
HGVS:: NC_000023.11:g.147259711T>C, NC_000023.10:g.146341229T>C, NW_004070890.2:g.2784102T>C, NR_030629.1:n.16A>G

Select item 12134620805.

rs1213462080 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:147259718 (GRCh38)
X:146341236 (GRCh37)
Canonical SPDI:: NC_000023.11:147259717:G:A
Gene:: MIR509-2 (Varview), MIR509-3 (Varview), LOC105373347 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.147259718G>A, NC_000023.10:g.146341236G>A, NW_004070890.2:g.2784109G>A, NR_030629.1:n.9C>T

Select item 10426592956.

rs1042659295 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:147259705 (GRCh38)
X:146341223 (GRCh37)
Canonical SPDI:: NC_000023.11:147259704:C:T
Gene:: MIR509-2 (Varview), MIR509-3 (Varview), LOC105373347 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000016/3 (GnomAD_exomes)
T=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.147259705C>T, NC_000023.10:g.146341223C>T, NW_004070890.2:g.2784096C>T, NR_030629.1:n.22G>A

Select item 9866417827.

rs986641782 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:147259654 (GRCh38)
X:146341172 (GRCh37)
Canonical SPDI:: NC_000023.11:147259653:G:A
Gene:: MIR509-2 (Varview), MIR509-3 (Varview), LOC105373347 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00003/8 (TOPMED)
HGVS:: NC_000023.11:g.147259654G>A, NC_000023.10:g.146341172G>A, NW_004070890.2:g.2784045G>A, NR_030629.1:n.73C>T

Select item 9119532918.

rs911953291 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:147259672 (GRCh38)
X:146341190 (GRCh37)
Canonical SPDI:: NC_000023.11:147259671:A:G
Gene:: MIR509-2 (Varview), MIR509-3 (Varview), LOC105373347 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000005/1 (GnomAD_exomes)
G=0.000011/3 (TOPMED)
G=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.147259672A>G, NC_000023.10:g.146341190A>G, NW_004070890.2:g.2784063A>G, NR_030629.1:n.55T>C

Select item 7827093569.

rs782709356 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:147259673 (GRCh38)
X:146341191 (GRCh37)
Canonical SPDI:: NC_000023.11:147259672:C:T
Gene:: MIR509-2 (Varview), MIR509-3 (Varview), LOC105373347 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
T=0.000011/1 (ExAC)
T=0.000011/2 (GnomAD_exomes)
T=0.000019/2 (GnomAD)
T=0.000049/13 (TOPMED)
HGVS:: NC_000023.11:g.147259673C>T, NC_000023.10:g.146341191C>T, NW_004070890.2:g.2784064C>T, NR_030629.1:n.54G>A

Select item 78268334810.

rs782683348 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:147259701 (GRCh38)
X:146341219 (GRCh37)
Canonical SPDI:: NC_000023.11:147259700:T:C
Gene:: MIR509-2 (Varview), MIR509-3 (Varview), LOC105373347 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00001/1 (GnomAD)
C=0.000011/3 (TOPMED)
C=0.000022/4 (GnomAD_exomes)
C=0.000034/3 (ExAC)
HGVS:: NC_000023.11:g.147259701T>C, NC_000023.10:g.146341219T>C, NW_004070890.2:g.2784092T>C, NR_030629.1:n.26A>G

Select item 78262015111.

rs782620151 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:147259693 (GRCh38)
X:146341211 (GRCh37)
Canonical SPDI:: NC_000023.11:147259692:A:G
Gene:: MIR509-2 (Varview), MIR509-3 (Varview), LOC105373347 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: G=0./0 (ExAC)
HGVS:: NC_000023.11:g.147259693A>G, NC_000023.10:g.146341211A>G, NW_004070890.2:g.2784084A>G, NR_030629.1:n.34T>C

Select item 78258290612.

rs782582906 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: X:147259679 (GRCh38)
X:146341197 (GRCh37)
Canonical SPDI:: NC_000023.11:147259678:A:C,NC_000023.11:147259678:A:T
Gene:: MIR509-2 (Varview), MIR509-3 (Varview), LOC105373347 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0./0 (ALSPAC)
C=0.000005/1 (GnomAD_exomes)
T=0.000008/2 (TOPMED)
C=0.000011/1 (ExAC)
T=0.00027/1 (TWINSUK)
A=0.5/1 (SGDP_PRJ)
HGVS:: NC_000023.11:g.147259679A>C, NC_000023.11:g.147259679A>T, NC_000023.10:g.146341197A>C, NC_000023.10:g.146341197A>T, NW_004070890.2:g.2784070A>C, NW_004070890.2:g.2784070A>T, NR_030629.1:n.48T>G, NR_030629.1:n.48T>A

Select item 78256106813.

rs782561068 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:147259667 (GRCh38)
X:146341185 (GRCh37)
Canonical SPDI:: NC_000023.11:147259666:C:T
Gene:: MIR509-2 (Varview), MIR509-3 (Varview), LOC105373347 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by cluster
MAF:: T=0.000005/1 (GnomAD_exomes)
T=0.000011/1 (ExAC)
HGVS:: NC_000023.11:g.147259667C>T, NC_000023.10:g.146341185C>T, NW_004070890.2:g.2784058C>T, NR_030629.1:n.60G>A

Select item 78232967114.

rs782329671 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: X:147259708 (GRCh38)
X:146341226 (GRCh37)
Canonical SPDI:: NC_000023.11:147259707:G:A,NC_000023.11:147259707:G:T
Gene:: MIR509-2 (Varview), MIR509-3 (Varview), LOC105373347 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000016/3 (GnomAD_exomes)
A=0.000019/2 (GnomAD)
A=0.000034/3 (ExAC)
HGVS:: NC_000023.11:g.147259708G>A, NC_000023.11:g.147259708G>T, NC_000023.10:g.146341226G>A, NC_000023.10:g.146341226G>T, NW_004070890.2:g.2784099G>A, NW_004070890.2:g.2784099G>T, NR_030629.1:n.19C>T, NR_030629.1:n.19C>A

Select item 78230626215.

rs782306262 [Homo sapiens]

Variant type:: INS
Alleles:: ->T [Show Flanks]
Chromosome:: X:147259707 (GRCh38)
X:146341226 (GRCh37)
Canonical SPDI:: NC_000023.11:147259707::T
Gene:: MIR509-2 (Varview), MIR509-3 (Varview), LOC105373347 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00026/6 (ALFA)
T=0.000213/2 (GoESP)
T=0.000365/38 (GnomAD)
T=0.000552/146 (TOPMED)
T=0.000997/87 (ExAC)
T=0.001002/183 (GnomAD_exomes)
T=0.002205/28 (TOMMO)
T=0.002914/14 (1000Genomes)
T=0.03/3 (Vietnamese)
HGVS:: NC_000023.11:g.147259707_147259708insT, NC_000023.10:g.146341225_146341226insT, NW_004070890.2:g.2784098_2784099insT, NR_030629.1:n.19_20insA

Select item 78218193916.

rs782181939 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:147259707 (GRCh38)
X:146341225 (GRCh37)
Canonical SPDI:: NC_000023.11:147259706:C:T
Gene:: MIR509-2 (Varview), MIR509-3 (Varview), LOC105373347 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/1 (ExAC)
T=0.000022/4 (GnomAD_exomes)
T=0.000038/4 (GnomAD)
T=0.000057/15 (TOPMED)
HGVS:: NC_000023.11:g.147259707C>T, NC_000023.10:g.146341225C>T, NW_004070890.2:g.2784098C>T, NR_030629.1:n.20G>A

Select item 78210404217.

rs782104042 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: X:147259730 (GRCh38)
X:146341248 (GRCh37)
Canonical SPDI:: NC_000023.11:147259723:CACACACA:CACACA
Gene:: MIR509-2 (Varview), MIR509-3 (Varview), LOC105373347 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by cluster
MAF:: -=0.000016/3 (GnomAD_exomes)
-=0.000023/2 (ExAC)
HGVS:: NC_000023.11:g.147259724CA[3], NC_000023.10:g.146341242CA[3], NW_004070890.2:g.2784115CA[3]

Select item 78195141518.

rs781951415 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: X:147259717 (GRCh38)
X:146341235 (GRCh37)
Canonical SPDI:: NC_000023.11:147259716:A:T
Gene:: MIR509-2 (Varview), MIR509-3 (Varview), LOC105373347 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/1 (ExAC)
T=0.000011/3 (TOPMED)
T=0.000022/4 (GnomAD_exomes)
HGVS:: NC_000023.11:g.147259717A>T, NC_000023.10:g.146341235A>T, NW_004070890.2:g.2784108A>T, NR_030629.1:n.10T>A

Select item 78181603519.

rs781816035 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: X:147259674 (GRCh38)
X:146341192 (GRCh37)
Canonical SPDI:: NC_000023.11:147259673:G:A,NC_000023.11:147259673:G:T
Gene:: MIR509-2 (Varview), MIR509-3 (Varview), LOC105373347 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000034/3 (ExAC)
A=0.000048/5 (GnomAD)
A=0.000049/13 (TOPMED)
A=0.00006/11 (GnomAD_exomes)
HGVS:: NC_000023.11:g.147259674G>A, NC_000023.11:g.147259674G>T, NC_000023.10:g.146341192G>A, NC_000023.10:g.146341192G>T, NW_004070890.2:g.2784065G>A, NW_004070890.2:g.2784065G>T, NR_030629.1:n.53C>T, NR_030629.1:n.53C>A

Select item 36844766620.

rs368447666 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: X:147259699 (GRCh38)
X:146341217 (GRCh37)
Canonical SPDI:: NC_000023.11:147259698:G:A,NC_000023.11:147259698:G:C
Gene:: MIR509-2 (Varview), MIR509-3 (Varview), LOC105373347 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.001127/31 (ALFA)
C=0.000624/2 (1000Genomes)
C=0.000809/3 (TWINSUK)
C=0.000907/240 (TOPMED)
C=0.001038/3 (ALSPAC)
C=0.001133/118 (GnomAD)
C=0.001318/115 (ExAC)
C=0.001846/15 (GoESP)
C=0.009259/1 (Qatari)
HGVS:: NC_000023.11:g.147259699G>A, NC_000023.11:g.147259699G>C, NC_000023.10:g.146341217G>A, NC_000023.10:g.146341217G>C, NW_004070890.2:g.2784090G>A, NW_004070890.2:g.2784090G>C, NR_030629.1:n.28C>T, NR_030629.1:n.28C>G

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