SNP Links for Nucleotide (Select 323510671) - SNP

Links from Nucleotide

Items: 1 to 20 of 616

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Select item 14898491411.

rs1489849141 [Homo sapiens]

Variant type:: DELINS
Alleles:: TAAA>- [Show Flanks]
Chromosome:: 2:39599550 (GRCh38)
2:39826690 (GRCh37)
Canonical SPDI:: NC_000002.12:39599546:AAATAAA:AAA
Gene:: MAP4K3-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.39599550_39599553del, NC_000002.11:g.39826690_39826693del, NR_037875.1:n.723_726del

Select item 14880379572.

rs1488037957 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:39599948 (GRCh38)
2:39827088 (GRCh37)
Canonical SPDI:: NC_000002.12:39599947:A:G
Gene:: MAP4K3-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000002.12:g.39599948A>G, NC_000002.11:g.39827088A>G, NR_037875.1:n.1121A>G

Select item 14876136363.

rs1487613636 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:39599377 (GRCh38)
2:39826517 (GRCh37)
Canonical SPDI:: NC_000002.12:39599376:A:G
Gene:: MAP4K3-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000045/12 (TOPMED)
HGVS:: NC_000002.12:g.39599377A>G, NC_000002.11:g.39826517A>G, NR_037875.1:n.550A>G

Select item 14875596754.

rs1487559675 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:39600468 (GRCh38)
2:39827608 (GRCh37)
Canonical SPDI:: NC_000002.12:39600467:C:T
Gene:: MAP4K3-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.39600468C>T, NC_000002.11:g.39827608C>T, NR_037875.1:n.1641C>T

Select item 14854386855.

rs1485438685 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:39599917 (GRCh38)
2:39827057 (GRCh37)
Canonical SPDI:: NC_000002.12:39599916:T:C
Gene:: MAP4K3-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000002.12:g.39599917T>C, NC_000002.11:g.39827057T>C, NR_037875.1:n.1090T>C

Select item 14852274566.

rs1485227456 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:39437437 (GRCh38)
2:39664578 (GRCh37)
Canonical SPDI:: NC_000002.12:39437436:C:T
Gene:: MAP4K3 (Varview), MAP4K3-DT (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0./0 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000002.12:g.39437437C>T, NC_000002.11:g.39664578C>T, NG_028007.1:g.4642G>A, NR_037875.1:n.22C>T

Select item 14825759757.

rs1482575975 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:39601276 (GRCh38)
2:39828416 (GRCh37)
Canonical SPDI:: NC_000002.12:39601275:G:A
Gene:: MAP4K3-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000054/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000002.12:g.39601276G>A, NC_000002.11:g.39828416G>A, NR_037875.1:n.2449G>A

Select item 14815485918.

rs1481548591 [Homo sapiens]

Variant type:: SNV:
Alleles:: G>A
Chromosome:: no mapping
Canonical SPDI:

Select item 14809575709.

rs1480957570 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 2:39600371 (GRCh38)
2:39827511 (GRCh37)
Canonical SPDI:: NC_000002.12:39600370:G:A,NC_000002.12:39600370:G:C
Gene:: MAP4K3-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.39600371G>A, NC_000002.12:g.39600371G>C, NC_000002.11:g.39827511G>A, NC_000002.11:g.39827511G>C, NR_037875.1:n.1544G>A, NR_037875.1:n.1544G>C

Select item 148040803810.

rs1480408038 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 2:39601325 (GRCh38)
2:39828465 (GRCh37)
Canonical SPDI:: NC_000002.12:39601324:C:A
Gene:: MAP4K3-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000021/3 (GnomAD)
HGVS:: NC_000002.12:g.39601325C>A, NC_000002.11:g.39828465C>A, NR_037875.1:n.2498C>A

Select item 147714486311.

rs1477144863 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:39600525 (GRCh38)
2:39827665 (GRCh37)
Canonical SPDI:: NC_000002.12:39600524:A:G
Gene:: MAP4K3-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.39600525A>G, NC_000002.11:g.39827665A>G, NR_037875.1:n.1698A>G

Select item 147703529612.

rs1477035296 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 2:39599450 (GRCh38)
2:39826590 (GRCh37)
Canonical SPDI:: NC_000002.12:39599449:TTTT:TTT
Gene:: MAP4K3-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTT=0.000142/2 (ALFA)
-=0.000014/2 (GnomAD)
-=0.000042/11 (TOPMED)
HGVS:: NC_000002.12:g.39599453del, NC_000002.11:g.39826593del, NR_037875.1:n.626del

Select item 147694992413.

rs1476949924 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:39599841 (GRCh38)
2:39826981 (GRCh37)
Canonical SPDI:: NC_000002.12:39599840:A:G
Gene:: MAP4K3-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000002.12:g.39599841A>G, NC_000002.11:g.39826981A>G, NR_037875.1:n.1014A>G

Select item 147689922614.

rs1476899226 [Homo sapiens]

Variant type:: DEL
Alleles:: AA>- [Show Flanks]
Chromosome:: 2:39600880 (GRCh38)
2:39828020 (GRCh37)
Canonical SPDI:: NC_000002.12:39600879:AA:
Gene:: MAP4K3-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.39600880_39600881del, NC_000002.11:g.39828020_39828021del, NR_037875.1:n.2053_2054del

Select item 147647408515.

rs1476474085 [Homo sapiens]

Variant type:: DELINS
Alleles:: CAA>- [Show Flanks]
Chromosome:: 2:39599557 (GRCh38)
2:39826697 (GRCh37)
Canonical SPDI:: NC_000002.12:39599554:AACAA:AA
Gene:: MAP4K3-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
-=0.000015/4 (TOPMED)
HGVS:: NC_000002.12:g.39599557_39599559del, NC_000002.11:g.39826697_39826699del, NR_037875.1:n.730_732del

Select item 147583641616.

rs1475836416 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 2:39518628 (GRCh38)
2:39745769 (GRCh37)
Canonical SPDI:: NC_000002.12:39518627:A:C
Gene:: MAP4K3-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.39518628A>C, NC_000002.11:g.39745769A>C, NR_037875.1:n.456A>C

Select item 147549769717.

rs1475497697 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:39600022 (GRCh38)
2:39827162 (GRCh37)
Canonical SPDI:: NC_000002.12:39600021:C:T
Gene:: MAP4K3-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.39600022C>T, NC_000002.11:g.39827162C>T, NR_037875.1:n.1195C>T

Select item 147291251718.

rs1472912517 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 2:39437479 (GRCh38)
2:39664620 (GRCh37)
Canonical SPDI:: NC_000002.12:39437478:A:G,NC_000002.12:39437478:A:T
Gene:: MAP4K3 (Varview), MAP4K3-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
T=0.00006/1 (TOMMO)
HGVS:: NC_000002.12:g.39437479A>G, NC_000002.12:g.39437479A>T, NC_000002.11:g.39664620A>G, NC_000002.11:g.39664620A>T, NG_028007.1:g.4600T>C, NG_028007.1:g.4600T>A, NR_037875.1:n.64A>G, NR_037875.1:n.64A>T

Select item 147216394519.

rs1472163945 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:39601132 (GRCh38)
2:39828272 (GRCh37)
Canonical SPDI:: NC_000002.12:39601131:A:G
Gene:: MAP4K3-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000002.12:g.39601132A>G, NC_000002.11:g.39828272A>G, NR_037875.1:n.2305A>G

Select item 147210011320.

rs1472100113 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:39516437 (GRCh38)
2:39743578 (GRCh37)
Canonical SPDI:: NC_000002.12:39516436:A:G
Gene:: MAP4K3-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.39516437A>G, NC_000002.11:g.39743578A>G, NR_037875.1:n.306A>G

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