SNP Links for Nucleotide (Select 326368241) - SNP

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Links from Nucleotide

Items: 1 to 20 of 129

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Select item 14898698191.

rs1489869819 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 4:20393426 (GRCh38)
4:20395049 (GRCh37)
Canonical SPDI:: NC_000004.12:20393425:C:G,NC_000004.12:20393425:C:T
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000004.12:g.20393426C>G, NC_000004.12:g.20393426C>T, NC_000004.11:g.20395049C>G, NC_000004.11:g.20395049C>T, NG_047105.1:g.146502C>G, NG_047105.1:g.146502C>T, NR_037876.2:n.152C>G, NR_037876.2:n.152C>T

Select item 14869226802.

rs1486922680 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 4:20392227 (GRCh38)
4:20393850 (GRCh37)
Canonical SPDI:: NC_000004.12:20392226:C:G
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
HGVS:: NC_000004.12:g.20392227C>G, NC_000004.11:g.20393850C>G, NG_047105.1:g.145303C>G, NR_037876.2:n.39C>G

Select item 14821099433.

rs1482109943 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:20392258 (GRCh38)
4:20393881 (GRCh37)
Canonical SPDI:: NC_000004.12:20392257:A:G
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
G=0.000035/1 (TOMMO)
HGVS:: NC_000004.12:g.20392258A>G, NC_000004.11:g.20393881A>G, NG_047105.1:g.145334A>G, NR_037876.2:n.70A>G

Select item 14806300744.

rs1480630074 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 4:20392200 (GRCh38)
4:20393823 (GRCh37)
Canonical SPDI:: NC_000004.12:20392199:C:G,NC_000004.12:20392199:C:T
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000004.12:g.20392200C>G, NC_000004.12:g.20392200C>T, NC_000004.11:g.20393823C>G, NC_000004.11:g.20393823C>T, NG_047105.1:g.145276C>G, NG_047105.1:g.145276C>T, NR_037876.2:n.12C>G, NR_037876.2:n.12C>T

Select item 14667046185.

rs1466704618 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 4:20393600 (GRCh38)
4:20395224 (GRCh37)
Canonical SPDI:: NC_000004.12:20393600:T:TT
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: T=0./0 (GnomAD)
HGVS:: NC_000004.12:g.20393601dup, NC_000004.11:g.20395224dup, NG_047105.1:g.146677dup, NR_037876.2:n.215dup

Select item 14653183936.

rs1465318393 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 4:20394646 (GRCh38)
4:20396269 (GRCh37)
Canonical SPDI:: NC_000004.12:20394645:A:C
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.20394646A>C, NC_000004.11:g.20396269A>C, NG_047105.1:g.147722A>C, NR_037876.2:n.391A>C

Select item 14525250947.

rs1452525094 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:20392216 (GRCh38)
4:20393839 (GRCh37)
Canonical SPDI:: NC_000004.12:20392215:A:G
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000094/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.20392216A>G, NC_000004.11:g.20393839A>G, NG_047105.1:g.145292A>G, NR_037876.2:n.28A>G

Select item 14501643298.

rs1450164329 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 4:20393622 (GRCh38)
4:20395245 (GRCh37)
Canonical SPDI:: NC_000004.12:20393621:A:C
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000142/2 (ALFA)
C=0.000026/7 (TOPMED)
C=0.000043/6 (GnomAD)
HGVS:: NC_000004.12:g.20393622A>C, NC_000004.11:g.20395245A>C, NG_047105.1:g.146698A>C, NR_037876.2:n.236A>C

Select item 14466303669.

rs1446630366 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 4:20394614 (GRCh38)
4:20396237 (GRCh37)
Canonical SPDI:: NC_000004.12:20394613:C:T
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000004.12:g.20394614C>T, NC_000004.11:g.20396237C>T, NG_047105.1:g.147690C>T, NR_037876.2:n.359C>T

Select item 144653245810.

rs1446532458 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 4:20394839 (GRCh38)
4:20396462 (GRCh37)
Canonical SPDI:: NC_000004.12:20394838:C:G,NC_000004.12:20394838:C:T
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000004.12:g.20394839C>G, NC_000004.12:g.20394839C>T, NC_000004.11:g.20396462C>G, NC_000004.11:g.20396462C>T, NG_047105.1:g.147915C>G, NG_047105.1:g.147915C>T, NR_037876.2:n.584C>G, NR_037876.2:n.584C>T

Select item 144544455611.

rs1445444556 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:20394552 (GRCh38)
4:20396175 (GRCh37)
Canonical SPDI:: NC_000004.12:20394551:G:A
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000004.12:g.20394552G>A, NC_000004.11:g.20396175G>A, NG_047105.1:g.147628G>A, NR_037876.2:n.297G>A

Select item 144102122712.

rs1441021227 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 4:20394649 (GRCh38)
4:20396272 (GRCh37)
Canonical SPDI:: NC_000004.12:20394648:A:G,NC_000004.12:20394648:A:T
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.20394649A>G, NC_000004.12:g.20394649A>T, NC_000004.11:g.20396272A>G, NC_000004.11:g.20396272A>T, NG_047105.1:g.147725A>G, NG_047105.1:g.147725A>T, NR_037876.2:n.394A>G, NR_037876.2:n.394A>T

Select item 143775880313.

rs1437758803 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:20393609 (GRCh38)
4:20395232 (GRCh37)
Canonical SPDI:: NC_000004.12:20393608:A:G
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.000084/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000004.12:g.20393609A>G, NC_000004.11:g.20395232A>G, NG_047105.1:g.146685A>G, NR_037876.2:n.223A>G

Select item 143722113814.

rs1437221138 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 4:20394776 (GRCh38)
4:20396399 (GRCh37)
Canonical SPDI:: NC_000004.12:20394775:A:C
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
C=0.000248/4 (TOMMO)
C=0.002396/7 (KOREAN)
C=0.002729/5 (Korea1K)
HGVS:: NC_000004.12:g.20394776A>C, NC_000004.11:g.20396399A>C, NG_047105.1:g.147852A>C, NR_037876.2:n.521A>C

Select item 142318970315.

rs1423189703 [Homo sapiens]

Variant type:: SNV:
Alleles:: T>C
Chromosome:: no mapping
Canonical SPDI:

Select item 142218047316.

rs1422180473 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:20393364 (GRCh38)
4:20394987 (GRCh37)
Canonical SPDI:: NC_000004.12:20393363:G:A
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000004.12:g.20393364G>A, NC_000004.11:g.20394987G>A, NG_047105.1:g.146440G>A, NR_037876.2:n.90G>A

Select item 141331628517.

rs1413316285 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 4:20394575 (GRCh38)
4:20396198 (GRCh37)
Canonical SPDI:: NC_000004.12:20394574:T:A
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.20394575T>A, NC_000004.11:g.20396198T>A, NG_047105.1:g.147651T>A, NR_037876.2:n.320T>A

Select item 139710872018.

rs1397108720 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 4:20393359 (GRCh38)
4:20394982 (GRCh37)
Canonical SPDI:: NC_000004.12:20393358:C:A
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.20393359C>A, NC_000004.11:g.20394982C>A, NG_047105.1:g.146435C>A, NR_037876.2:n.85C>A

Select item 138851350619.

rs1388513506 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 4:20394760 (GRCh38)
4:20396383 (GRCh37)
Canonical SPDI:: NC_000004.12:20394759:A:T
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.20394760A>T, NC_000004.11:g.20396383A>T, NG_047105.1:g.147836A>T, NR_037876.2:n.505A>T

Select item 138462035520.

rs1384620355 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 4:20394572 (GRCh38)
4:20396195 (GRCh37)
Canonical SPDI:: NC_000004.12:20394571:A:T
Gene:: SLIT2 (Varview), SLIT2-IT1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.20394572A>T, NC_000004.11:g.20396195A>T, NG_047105.1:g.147648A>T, NR_037876.2:n.317A>T