SNP Links for Nucleotide (Select 339895826) - SNP

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Links from Nucleotide

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Select item 14896820511.

rs1489682051 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:152536923 (GRCh38)
4:153458075 (GRCh37)
Canonical SPDI:: NC_000004.12:152536922:G:A
Gene:: MIR4453HG (Varview), FBXW7 (Varview), MIR4453 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000021/3 (GnomAD)
A=0.000318/5 (TOMMO)
HGVS:: NC_000004.12:g.152536923G>A, NC_000004.11:g.153458075G>A, NG_029466.2:g.4951C>T, NR_033797.2:n.660G>A

Select item 14884386442.

rs1488438644 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 4:152539007 (GRCh38)
4:153460159 (GRCh37)
Canonical SPDI:: NC_000004.12:152539006:T:A
Gene:: MIR4453HG (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.152539007T>A, NC_000004.11:g.153460159T>A, NG_029466.2:g.2867A>T, NR_033797.2:n.2744T>A

Select item 14884090403.

rs1488409040 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 4:152536296 (GRCh38)
4:153457448 (GRCh37)
Canonical SPDI:: NC_000004.12:152536295:T:G
Gene:: MIR4453HG (Varview), FBXW7 (Varview), MIR4453 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000034/9 (TOPMED)
HGVS:: NC_000004.12:g.152536296T>G, NC_000004.11:g.153457448T>G, NG_029466.2:g.5578A>C, NR_033797.2:n.33T>G

Select item 14881106044.

rs1488110604 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 4:152537531 (GRCh38)
4:153458683 (GRCh37)
Canonical SPDI:: NC_000004.12:152537530:T:G
Gene:: MIR4453HG (Varview), FBXW7 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000224/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000004.12:g.152537531T>G, NC_000004.11:g.153458683T>G, NG_029466.2:g.4343A>C, NR_033797.2:n.1268T>G

Select item 14852504165.

rs1485250416 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 4:152537754 (GRCh38)
4:153458906 (GRCh37)
Canonical SPDI:: NC_000004.12:152537753:C:G,NC_000004.12:152537753:C:T
Gene:: MIR4453HG (Varview), FBXW7 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.152537754C>G, NC_000004.12:g.152537754C>T, NC_000004.11:g.153458906C>G, NC_000004.11:g.153458906C>T, NG_029466.2:g.4120G>C, NG_029466.2:g.4120G>A, NR_033797.2:n.1491C>G, NR_033797.2:n.1491C>T

Select item 14849247006.

rs1484924700 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:152537179 (GRCh38)
4:153458331 (GRCh37)
Canonical SPDI:: NC_000004.12:152537178:A:G
Gene:: MIR4453HG (Varview), FBXW7 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.152537179A>G, NC_000004.11:g.153458331A>G, NG_029466.2:g.4695T>C, NR_033797.2:n.916A>G

Select item 14848730757.

rs1484873075 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 4:152536311 (GRCh38)
4:153457463 (GRCh37)
Canonical SPDI:: NC_000004.12:152536310:C:G,NC_000004.12:152536310:C:T
Gene:: MIR4453HG (Varview), FBXW7 (Varview), MIR4453 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000004.12:g.152536311C>G, NC_000004.12:g.152536311C>T, NC_000004.11:g.153457463C>G, NC_000004.11:g.153457463C>T, NG_029466.2:g.5563G>C, NG_029466.2:g.5563G>A, NR_033797.2:n.48C>G, NR_033797.2:n.48C>T

Select item 14834972378.

rs1483497237 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:152537589 (GRCh38)
4:153458741 (GRCh37)
Canonical SPDI:: NC_000004.12:152537588:G:A
Gene:: MIR4453HG (Varview), FBXW7 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.152537589G>A, NC_000004.11:g.153458741G>A, NG_029466.2:g.4285C>T, NR_033797.2:n.1326G>A

Select item 14795065789.

rs1479506578 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 4:152537618 (GRCh38)
4:153458770 (GRCh37)
Canonical SPDI:: NC_000004.12:152537617:G:C
Gene:: MIR4453HG (Varview), FBXW7 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000004.12:g.152537618G>C, NC_000004.11:g.153458770G>C, NG_029466.2:g.4256C>G, NR_033797.2:n.1355G>C

Select item 147945638810.

rs1479456388 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:152536542 (GRCh38)
4:153457694 (GRCh37)
Canonical SPDI:: NC_000004.12:152536541:A:G
Gene:: MIR4453HG (Varview), FBXW7 (Varview), MIR4453 (Varview)
Functional Consequence:: upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000049/13 (TOPMED)
HGVS:: NC_000004.12:g.152536542A>G, NC_000004.11:g.153457694A>G, NG_029466.2:g.5332T>C, NR_033797.2:n.279A>G

Select item 147905523611.

rs1479055236 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 4:152538440 (GRCh38)
4:153459592 (GRCh37)
Canonical SPDI:: NC_000004.12:152538439:C:T
Gene:: MIR4453HG (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000034/9 (TOPMED)
T=0.000043/6 (GnomAD)
HGVS:: NC_000004.12:g.152538440C>T, NC_000004.11:g.153459592C>T, NG_029466.2:g.3434G>A, NR_033797.2:n.2177C>T

Select item 147754977012.

rs1477549770 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 4:152537215 (GRCh38)
4:153458367 (GRCh37)
Canonical SPDI:: NC_000004.12:152537214:G:A
Gene:: MIR4453HG (Varview), FBXW7 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.00003/8 (TOPMED)
A=0.000342/1 (KOREAN)
HGVS:: NC_000004.12:g.152537215G>A, NC_000004.11:g.153458367G>A, NG_029466.2:g.4659C>T, NR_033797.2:n.952G>A

Select item 147539223913.

rs1475392239 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 4:152536853 (GRCh38)
4:153458005 (GRCh37)
Canonical SPDI:: NC_000004.12:152536852:C:G
Gene:: MIR4453HG (Varview), FBXW7 (Varview), MIR4453 (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
G=0.000057/8 (GnomAD)
HGVS:: NC_000004.12:g.152536853C>G, NC_000004.11:g.153458005C>G, NG_029466.2:g.5021G>C, NR_033797.2:n.590C>G

Select item 147474474614.

rs1474744746 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 4:152538756 (GRCh38)
4:153459908 (GRCh37)
Canonical SPDI:: NC_000004.12:152538755:CCC:CC
Gene:: MIR4453HG (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0.000084/1 (ALFA)
-=0.000019/5 (TOPMED)
-=0.000029/4 (GnomAD)
HGVS:: NC_000004.12:g.152538758del, NC_000004.11:g.153459910del, NG_029466.2:g.3118del, NR_033797.2:n.2495del

Select item 147473452015.

rs1474734520 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 4:152537856 (GRCh38)
4:153459008 (GRCh37)
Canonical SPDI:: NC_000004.12:152537855:CCCCC:CCCC
Gene:: MIR4453HG (Varview), FBXW7 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCC=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.152537860del, NC_000004.11:g.153459012del, NG_029466.2:g.4018del, NR_033797.2:n.1597del

Select item 147468298916.

rs1474682989 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 4:152536719 (GRCh38)
4:153457871 (GRCh37)
Canonical SPDI:: NC_000004.12:152536718:A:G
Gene:: MIR4453HG (Varview), FBXW7 (Varview), MIR4453 (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.152536719A>G, NC_000004.11:g.153457871A>G, NG_029466.2:g.5155T>C, NR_033797.2:n.456A>G

Select item 147374909517.

rs1473749095 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:152538432 (GRCh38)
4:153459584 (GRCh37)
Canonical SPDI:: NC_000004.12:152538431:T:C
Gene:: MIR4453HG (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000004.12:g.152538432T>C, NC_000004.11:g.153459584T>C, NG_029466.2:g.3442A>G, NR_033797.2:n.2169T>C

Select item 147145744718.

rs1471457447 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 4:152538976 (GRCh38)
4:153460128 (GRCh37)
Canonical SPDI:: NC_000004.12:152538975:T:C
Gene:: MIR4453HG (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.152538976T>C, NC_000004.11:g.153460128T>C, NG_029466.2:g.2898A>G, NR_033797.2:n.2713T>C

Select item 147123392619.

rs1471233926 [Homo sapiens]

Variant type:: DEL
Alleles:: ACTCGCAGCC>- [Show Flanks]
Chromosome:: 4:152536308 (GRCh38)
4:153457460 (GRCh37)
Canonical SPDI:: NC_000004.12:152536307:ACTCGCAGCC:
Gene:: MIR4453HG (Varview), FBXW7 (Varview), MIR4453 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000004.12:g.152536308_152536317del, NC_000004.11:g.153457460_153457469del, NG_029466.2:g.5557_5566del, NR_033797.2:n.45_54del

Select item 146938884620.

rs1469388846 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 4:152536513 (GRCh38)
4:153457665 (GRCh37)
Canonical SPDI:: NC_000004.12:152536512:C:T
Gene:: MIR4453HG (Varview), FBXW7 (Varview), MIR4453 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000004.12:g.152536513C>T, NC_000004.11:g.153457665C>T, NG_029466.2:g.5361G>A, NR_033797.2:n.250C>T, NR_039658.1:n.86C>T