SNP Links for Nucleotide (Select 343488507) - SNP

Links from Nucleotide

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Select item 14915623701.

rs1491562370 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 5:150406340 (GRCh38)
5:149785903 (GRCh37)
Canonical SPDI:: NC_000005.10:150406338:AGA:A
Gene:: CD74 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.150406340_150406341del, NC_000005.9:g.149785903_149785904del, NG_029730.1:g.11597_11598del

Select item 14912715692.

rs1491271569 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CA [Show Flanks]
Chromosome:: 5:150409705 (GRCh38)
5:149789269 (GRCh37)
Canonical SPDI:: NC_000005.10:150409705:A:ACA
Gene:: CD74 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: ACA=0./0 (ALFA)
HGVS:: NC_000005.10:g.150409706_150409707insCA, NC_000005.9:g.149789269_149789270insCA, NG_029730.1:g.8231_8232insGT

Select item 14910954973.

rs1491095497 has merged into rs755621804 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAA>-,A,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 5:150409715 (GRCh38)
5:149789278 (GRCh37)
Canonical SPDI:: NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000005.10:150409704:AAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: CD74 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAA=0./0 (ALFA)
-=0./0 (GENOME_DK)
HGVS:: NC_000005.10:g.150409715_150409722del, NC_000005.10:g.150409716_150409722del, NC_000005.10:g.150409718_150409722del, NC_000005.10:g.150409719_150409722del, NC_000005.10:g.150409720_150409722del, NC_000005.10:g.150409721_150409722del, NC_000005.10:g.150409722del, NC_000005.10:g.150409722dup, NC_000005.10:g.150409721_150409722dup, NC_000005.10:g.150409720_150409722dup, NC_000005.10:g.150409719_150409722dup, NC_000005.10:g.150409718_150409722dup, NC_000005.10:g.150409717_150409722dup, NC_000005.10:g.150409716_150409722dup, NC_000005.10:g.150409715_150409722dup, NC_000005.10:g.150409714_150409722dup, NC_000005.10:g.150409713_150409722dup, NC_000005.10:g.150409712_150409722dup, NC_000005.10:g.150409711_150409722dup, NC_000005.10:g.150409710_150409722dup, NC_000005.10:g.150409709_150409722dup, NC_000005.10:g.150409708_150409722dup, NC_000005.10:g.150409707_150409722dup, NC_000005.10:g.150409706_150409722dup, NC_000005.10:g.150409722_150409723insAAAAAAAAAAAAAAAAAAA, NC_000005.10:g.150409722_150409723insAAAAAAAAAAAAAAAAAAAA, NC_000005.10:g.150409722_150409723insAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000005.10:g.150409722_150409723insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000005.9:g.149789278_149789285del, NC_000005.9:g.149789279_149789285del, NC_000005.9:g.149789281_149789285del, NC_000005.9:g.149789282_149789285del, NC_000005.9:g.149789283_149789285del, NC_000005.9:g.149789284_149789285del, NC_000005.9:g.149789285del, NC_000005.9:g.149789285dup, NC_000005.9:g.149789284_149789285dup, NC_000005.9:g.149789283_149789285dup, NC_000005.9:g.149789282_149789285dup, NC_000005.9:g.149789281_149789285dup, NC_000005.9:g.149789280_149789285dup, NC_000005.9:g.149789279_149789285dup, NC_000005.9:g.149789278_149789285dup, NC_000005.9:g.149789277_149789285dup, NC_000005.9:g.149789276_149789285dup, NC_000005.9:g.149789275_149789285dup, NC_000005.9:g.149789274_149789285dup, NC_000005.9:g.149789273_149789285dup, NC_000005.9:g.149789272_149789285dup, NC_000005.9:g.149789271_149789285dup, NC_000005.9:g.149789270_149789285dup, NC_000005.9:g.149789269_149789285dup, NC_000005.9:g.149789285_149789286insAAAAAAAAAAAAAAAAAAA, NC_000005.9:g.149789285_149789286insAAAAAAAAAAAAAAAAAAAA, NC_000005.9:g.149789285_149789286insAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000005.9:g.149789285_149789286insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NG_029730.1:g.8225_8232del, NG_029730.1:g.8226_8232del, NG_029730.1:g.8228_8232del, NG_029730.1:g.8229_8232del, NG_029730.1:g.8230_8232del, NG_029730.1:g.8231_8232del, NG_029730.1:g.8232del, NG_029730.1:g.8232dup, NG_029730.1:g.8231_8232dup, NG_029730.1:g.8230_8232dup, NG_029730.1:g.8229_8232dup, NG_029730.1:g.8228_8232dup, NG_029730.1:g.8227_8232dup, NG_029730.1:g.8226_8232dup, NG_029730.1:g.8225_8232dup, NG_029730.1:g.8224_8232dup, NG_029730.1:g.8223_8232dup, NG_029730.1:g.8222_8232dup, NG_029730.1:g.8221_8232dup, NG_029730.1:g.8220_8232dup, NG_029730.1:g.8219_8232dup, NG_029730.1:g.8218_8232dup, NG_029730.1:g.8217_8232dup, NG_029730.1:g.8216_8232dup, NG_029730.1:g.8232_8233insTTTTTTTTTTTTTTTTTTT, NG_029730.1:g.8232_8233insTTTTTTTTTTTTTTTTTTTT, NG_029730.1:g.8232_8233insTTTTTTTTTTTTTTTTTTTTTTTTT, NG_029730.1:g.8232_8233insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Select item 14906035844.

rs1490603584 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTAT>- [Show Flanks]
Chromosome:: 5:150415884 (GRCh38)
5:149795447 (GRCh37)
Canonical SPDI:: NC_000005.10:150415882:TGTAT:T
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.150415884_150415887del, NC_000005.9:g.149795447_149795450del, NG_029730.1:g.2051_2054del

Select item 14902441735.

rs1490244173 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 5:150416071 (GRCh38)
5:149795634 (GRCh37)
Canonical SPDI:: NC_000005.10:150416070:G:T
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000005.10:g.150416071G>T, NC_000005.9:g.149795634G>T, NG_029730.1:g.1866C>A

Select item 14902425356.

rs1490242535 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:150402105 (GRCh38)
5:149781668 (GRCh37)
Canonical SPDI:: NC_000005.10:150402104:C:T
Gene:: CD74 (Varview)
Functional Consequence:: 3_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000005.10:g.150402105C>T, NC_000005.9:g.149781668C>T, NG_011341.1:g.49467C>T, NG_029730.1:g.15832G>A, NM_004355.4:c.*135G>A, NM_004355.3:c.*135G>A, NM_001025159.3:c.*135G>A, NM_001025159.2:c.*135G>A, NR_157074.3:n.1003G>A, NR_157074.2:n.849G>A, NR_157074.1:n.849G>A, NM_001364083.3:c.*135G>A, NM_001364083.2:c.*135G>A, NM_001364083.1:c.*135G>A, NM_001364084.3:c.*167G>A, NM_001364084.2:c.*167G>A, NM_001364084.1:c.*167G>A, NM_001025158.3:c.*167G>A, NM_001025158.2:c.*167G>A

Select item 14902144447.

rs1490214444 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 5:150416998 (GRCh38)
5:149796561 (GRCh37)
Canonical SPDI:: NC_000005.10:150416997:C:G
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000005.10:g.150416998C>G, NC_000005.9:g.149796561C>G, NG_029730.1:g.939G>C

Select item 14898109648.

rs1489810964 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:150414962 (GRCh38)
5:149794525 (GRCh37)
Canonical SPDI:: NC_000005.10:150414961:C:T
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000106/2 (TOMMO)
HGVS:: NC_000005.10:g.150414962C>T, NC_000005.9:g.149794525C>T, NG_029730.1:g.2975G>A

Select item 14897149579.

rs1489714957 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:150416993 (GRCh38)
5:149796556 (GRCh37)
Canonical SPDI:: NC_000005.10:150416992:G:A
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000005.10:g.150416993G>A, NC_000005.9:g.149796556G>A, NG_029730.1:g.944C>T

Select item 148965537710.

rs1489655377 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:150417470 (GRCh38)
5:149797033 (GRCh37)
Canonical SPDI:: NC_000005.10:150417469:T:C
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.150417470T>C, NC_000005.9:g.149797033T>C, NG_029730.1:g.467A>G

Select item 148959615811.

rs1489596158 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:150408034 (GRCh38)
5:149787597 (GRCh37)
Canonical SPDI:: NC_000005.10:150408033:C:T
Gene:: CD74 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000035/1 (TOMMO)
T=0.000045/12 (TOPMED)
HGVS:: NC_000005.10:g.150408034C>T, NC_000005.9:g.149787597C>T, NG_029730.1:g.9903G>A

Select item 148955795412.

rs1489557954 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 5:150408605 (GRCh38)
5:149788168 (GRCh37)
Canonical SPDI:: NC_000005.10:150408604:C:G
Gene:: CD74 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.150408605C>G, NC_000005.9:g.149788168C>G, NG_029730.1:g.9332G>C

Select item 148939885313.

rs1489398853 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 5:150401422 (GRCh38)
5:149780985 (GRCh37)
Canonical SPDI:: NC_000005.10:150401421:TTTTT:TTTT
Gene:: CD74 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TTTT=0./0 (ALFA)
-=0.00016/1 (1000Genomes)
HGVS:: NC_000005.10:g.150401426del, NC_000005.9:g.149780989del, NG_011341.1:g.48788del, NG_029730.1:g.16515del, NR_157074.2:n.1532del, NM_001364083.2:c.*818del, NM_001364084.2:c.*850del, NR_157074.1:n.1532del, NM_001364083.1:c.*818del, NM_001364084.1:c.*850del

Select item 148924293714.

rs1489242937 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:150413201 (GRCh38)
5:149792764 (GRCh37)
Canonical SPDI:: NC_000005.10:150413200:A:G
Gene:: CD74 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0./0 (GnomAD)
HGVS:: NC_000005.10:g.150413201A>G, NC_000005.9:g.149792764A>G, NG_029730.1:g.4736T>C

Select item 148918982415.

rs1489189824 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:150410157 (GRCh38)
5:149789720 (GRCh37)
Canonical SPDI:: NC_000005.10:150410156:C:T
Gene:: CD74 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000224/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000106/2 (TOMMO)
T=0.000223/1 (Estonian)
HGVS:: NC_000005.10:g.150410157C>T, NC_000005.9:g.149789720C>T, NG_029730.1:g.7780G>A

Select item 148908990616.

rs1489089906 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:150414148 (GRCh38)
5:149793711 (GRCh37)
Canonical SPDI:: NC_000005.10:150414147:G:A
Gene:: CD74 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.150414148G>A, NC_000005.9:g.149793711G>A, NG_029730.1:g.3789C>T

Select item 148903792417.

rs1489037924 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:150401546 (GRCh38)
5:149781109 (GRCh37)
Canonical SPDI:: NC_000005.10:150401545:G:A
Gene:: CD74 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000023/6 (TOPMED)
HGVS:: NC_000005.10:g.150401546G>A, NC_000005.9:g.149781109G>A, NG_011341.1:g.48908G>A, NG_029730.1:g.16391C>T, NR_157074.2:n.1408C>T, NM_001364083.2:c.*694C>T, NM_001364084.2:c.*726C>T, NR_157074.1:n.1408C>T, NM_001364083.1:c.*694C>T, NM_001364084.1:c.*726C>T

Select item 148891778018.

rs1488917780 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:150416870 (GRCh38)
5:149796433 (GRCh37)
Canonical SPDI:: NC_000005.10:150416869:C:T
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
T=0.00003/8 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000005.10:g.150416870C>T, NC_000005.9:g.149796433C>T, NG_029730.1:g.1067G>A

Select item 148858199319.

rs1488581993 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:150401958 (GRCh38)
5:149781521 (GRCh37)
Canonical SPDI:: NC_000005.10:150401957:C:T
Gene:: CD74 (Varview)
Functional Consequence:: 3_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000015/2 (GnomAD_exomes)
T=0.000023/6 (TOPMED)
HGVS:: NC_000005.10:g.150401958C>T, NC_000005.9:g.149781521C>T, NG_011341.1:g.49320C>T, NG_029730.1:g.15979G>A, NM_004355.4:c.*282G>A, NM_004355.3:c.*282G>A, NM_001025159.3:c.*282G>A, NM_001025159.2:c.*282G>A, NR_157074.3:n.1150G>A, NR_157074.2:n.996G>A, NR_157074.1:n.996G>A, NM_001364083.3:c.*282G>A, NM_001364083.2:c.*282G>A, NM_001364083.1:c.*282G>A, NM_001364084.3:c.*314G>A, NM_001364084.2:c.*314G>A, NM_001364084.1:c.*314G>A, NM_001025158.3:c.*314G>A, NM_001025158.2:c.*314G>A

Select item 148855883020.

rs1488558830 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 5:150408352 (GRCh38)
5:149787915 (GRCh37)
Canonical SPDI:: NC_000005.10:150408351:C:G
Gene:: CD74 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.150408352C>G, NC_000005.9:g.149787915C>G, NG_029730.1:g.9585G>C

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