SNP Links for Nucleotide (Select 345525397) - SNP

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Links from Nucleotide

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Select item 14913322611.

rs1491332261 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TTGT [Show Flanks]
Chromosome:: 7:27169094 (GRCh38)
7:27208714 (GRCh37)
Canonical SPDI:: NC_000007.14:27169094:TGT:TGTTTGT
Gene:: MIR196B (Varview), HOXA10-HOXA9 (Varview), HOXA10-AS (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TGTTTGT=0./0 (ALFA)
TGTT=0.00049/3 (GnomAD)
HGVS:: NC_000007.14:g.27169097_27169098insTTGT, NC_000007.13:g.27208716_27208717insTTGT, NG_029923.1:g.1436_1437insAACA, NG_046720.1:g.6136_6137insTTGT

Select item 14908122252.

rs1490812225 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 7:27168027 (GRCh38)
7:27207646 (GRCh37)
Canonical SPDI:: NC_000007.14:27168026:G:C
Gene:: HOXA10-HOXA9 (Varview), HOXA10-AS (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.27168027G>C, NC_000007.13:g.27207646G>C, NG_029923.1:g.2504C>G, NG_046720.1:g.5066G>C

Select item 14906223063.

rs1490622306 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 7:27163424 (GRCh38)
7:27203043 (GRCh37)
Canonical SPDI:: NC_000007.14:27163423:C:G,NC_000007.14:27163423:C:T
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.27163424C>G, NC_000007.14:g.27163424C>T, NC_000007.13:g.27203043C>G, NC_000007.13:g.27203043C>T, NG_029923.1:g.7107G>C, NG_029923.1:g.7107G>A, NM_152739.4:c.*179G>C, NM_152739.4:c.*179G>A, NM_152739.3:c.*179G>C, NM_152739.3:c.*179G>A, NG_046720.1:g.463C>G, NG_046720.1:g.463C>T, NM_002142.3:c.*504G>C, NM_002142.3:c.*504G>A, NR_037940.1:n.1124G>C, NR_037940.1:n.1124G>A

Select item 14902456734.

rs1490245673 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:27169432 (GRCh38)
7:27209051 (GRCh37)
Canonical SPDI:: NC_000007.14:27169431:G:A
Gene:: MIR196B (Varview), HOXA10-HOXA9 (Varview), HOXA10-AS (Varview)
Functional Consequence:: downstream_transcript_variant,non_coding_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency
MAF:: A=0.000009/2 (GnomAD_exomes)
HGVS:: NC_000007.14:g.27169432G>A, NC_000007.13:g.27209051G>A, NG_029923.1:g.1099C>T, NR_046609.1:n.221G>A, NM_002142.1:c.220C>T

Select item 14897965365.

rs1489796536 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 7:27166118 (GRCh38)
7:27205737 (GRCh37)
Canonical SPDI:: NC_000007.14:27166117:G:T
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000007.14:g.27166118G>T, NC_000007.13:g.27205737G>T, NG_029923.1:g.4413C>A, NG_046720.1:g.3157G>T

Select item 14897129536.

rs1489712953 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 7:27164368 (GRCh38)
7:27203987 (GRCh37)
Canonical SPDI:: NC_000007.14:27164367:A:T
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.27164368A>T, NC_000007.13:g.27203987A>T, NG_029923.1:g.6163T>A, NG_046720.1:g.1407A>T

Select item 14896601017.

rs1489660101 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 7:27163454 (GRCh38)
7:27203073 (GRCh37)
Canonical SPDI:: NC_000007.14:27163453:A:C,NC_000007.14:27163453:A:G
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000007.14:g.27163454A>C, NC_000007.14:g.27163454A>G, NC_000007.13:g.27203073A>C, NC_000007.13:g.27203073A>G, NG_029923.1:g.7077T>G, NG_029923.1:g.7077T>C, NM_152739.4:c.*149T>G, NM_152739.4:c.*149T>C, NM_152739.3:c.*149T>G, NM_152739.3:c.*149T>C, NG_046720.1:g.493A>C, NG_046720.1:g.493A>G, NM_002142.3:c.*474T>G, NM_002142.3:c.*474T>C, NR_037940.1:n.1094T>G, NR_037940.1:n.1094T>C

Select item 14895787408.

rs1489578740 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:27166437 (GRCh38)
7:27206056 (GRCh37)
Canonical SPDI:: NC_000007.14:27166436:G:A
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.27166437G>A, NC_000007.13:g.27206056G>A, NG_029923.1:g.4094C>T, NG_046720.1:g.3476G>A

Select item 14894523489.

rs1489452348 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 7:27166225 (GRCh38)
7:27205844 (GRCh37)
Canonical SPDI:: NC_000007.14:27166224:G:T
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.27166225G>T, NC_000007.13:g.27205844G>T, NG_029923.1:g.4306C>A, NG_046720.1:g.3264G>T

Select item 148937683610.

rs1489376836 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:27169357 (GRCh38)
7:27208976 (GRCh37)
Canonical SPDI:: NC_000007.14:27169356:G:A
Gene:: MIR196B (Varview), HOXA10-HOXA9 (Varview), HOXA10-AS (Varview)
Functional Consequence:: downstream_transcript_variant,non_coding_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000007.14:g.27169357G>A, NC_000007.13:g.27208976G>A, NG_029923.1:g.1174C>T, NR_046609.1:n.146G>A, NM_002142.1:c.295C>T

Select item 148901601911.

rs1489016019 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 7:27160997 (GRCh38)
7:27200616 (GRCh37)
Canonical SPDI:: NC_000007.14:27160996:A:C
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000007.14:g.27160997A>C, NC_000007.13:g.27200616A>C, NG_029923.1:g.9534T>G

Select item 148791955812.

rs1487919558 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 7:27163218 (GRCh38)
7:27202837 (GRCh37)
Canonical SPDI:: NC_000007.14:27163217:C:A,NC_000007.14:27163217:C:T
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.27163218C>A, NC_000007.14:g.27163218C>T, NC_000007.13:g.27202837C>A, NC_000007.13:g.27202837C>T, NG_029923.1:g.7313G>T, NG_029923.1:g.7313G>A, NM_152739.4:c.*385G>T, NM_152739.4:c.*385G>A, NM_152739.3:c.*385G>T, NM_152739.3:c.*385G>A, NG_046720.1:g.257C>A, NG_046720.1:g.257C>T, NM_002142.3:c.*710G>T, NM_002142.3:c.*710G>A, NR_037940.1:n.1330G>T, NR_037940.1:n.1330G>A

Select item 148781683613.

rs1487816836 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 7:27165814 (GRCh38)
7:27205433 (GRCh37)
Canonical SPDI:: NC_000007.14:27165813:C:A,NC_000007.14:27165813:C:G,NC_000007.14:27165813:C:T
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000007.14:g.27165814C>A, NC_000007.14:g.27165814C>G, NC_000007.14:g.27165814C>T, NC_000007.13:g.27205433C>A, NC_000007.13:g.27205433C>G, NC_000007.13:g.27205433C>T, NG_029923.1:g.4717G>T, NG_029923.1:g.4717G>C, NG_029923.1:g.4717G>A, NG_046720.1:g.2853C>A, NG_046720.1:g.2853C>G, NG_046720.1:g.2853C>T

Select item 148764894914.

rs1487648949 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:27169906 (GRCh38)
7:27209525 (GRCh37)
Canonical SPDI:: NC_000007.14:27169905:G:A
Gene:: MIR196B (Varview), HOXA10-HOXA9 (Varview), HOXA10-AS (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.27169906G>A, NC_000007.13:g.27209525G>A, NG_029923.1:g.625C>T

Select item 148761697115.

rs1487616971 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 7:27168748 (GRCh38)
7:27208367 (GRCh37)
Canonical SPDI:: NC_000007.14:27168747:C:G,NC_000007.14:27168747:C:T
Gene:: HOXA10-HOXA9 (Varview), HOXA10-AS (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000007.14:g.27168748C>G, NC_000007.14:g.27168748C>T, NC_000007.13:g.27208367C>G, NC_000007.13:g.27208367C>T, NG_029923.1:g.1783G>C, NG_029923.1:g.1783G>A, NG_046720.1:g.5787C>G, NG_046720.1:g.5787C>T

Select item 148748817416.

rs1487488174 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:27161274 (GRCh38)
7:27200893 (GRCh37)
Canonical SPDI:: NC_000007.14:27161273:A:G
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.27161274A>G, NC_000007.13:g.27200893A>G, NG_029923.1:g.9257T>C

Select item 148638435117.

rs1486384351 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 7:27162703 (GRCh38)
7:27202322 (GRCh37)
Canonical SPDI:: NC_000007.14:27162702:C:A,NC_000007.14:27162702:C:T
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
T=0.000071/1 (TOMMO)
HGVS:: NC_000007.14:g.27162703C>A, NC_000007.14:g.27162703C>T, NC_000007.13:g.27202322C>A, NC_000007.13:g.27202322C>T, NG_029923.1:g.7828G>T, NG_029923.1:g.7828G>A, NM_152739.4:c.*900G>T, NM_152739.4:c.*900G>A, NM_152739.3:c.*900G>T, NM_152739.3:c.*900G>A, NM_002142.3:c.*1225G>T, NM_002142.3:c.*1225G>A, NR_037940.1:n.1845G>T, NR_037940.1:n.1845G>A

Select item 148631107318.

rs1486311073 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AGA [Show Flanks]
Chromosome:: 7:27165780 (GRCh38)
7:27205400 (GRCh37)
Canonical SPDI:: NC_000007.14:27165780:A:AAGA
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAGA=0./0 (ALFA)
AAG=0.000015/4 (TOPMED)
AAG=0.000029/4 (GnomAD)
HGVS:: NC_000007.14:g.27165781_27165782insAGA, NC_000007.13:g.27205400_27205401insAGA, NG_029923.1:g.4750_4751insCTT, NG_046720.1:g.2820_2821insAGA

Select item 148626353219.

rs1486263532 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 7:27162195 (GRCh38)
7:27201814 (GRCh37)
Canonical SPDI:: NC_000007.14:27162194:T:G
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000007.14:g.27162195T>G, NC_000007.13:g.27201814T>G, NG_029923.1:g.8336A>C

Select item 148622542720.

rs1486225427 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:27166286 (GRCh38)
7:27205905 (GRCh37)
Canonical SPDI:: NC_000007.14:27166285:C:T
Gene:: HOXA9 (Varview), HOXA10-HOXA9 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000007.14:g.27166286C>T, NC_000007.13:g.27205905C>T, NG_029923.1:g.4245G>A, NG_046720.1:g.3325C>T

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