SNP Links for Nucleotide (Select 384367991) - SNP

Links from Nucleotide

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Select item 14907904801.

rs1490790480 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 13:53840778 (GRCh38)
13:54414913 (GRCh37)
Canonical SPDI:: NC_000013.11:53840777:TTT:TT
Gene:: LINC00558 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000021/3 (GnomAD)
-=0.000045/12 (TOPMED)
HGVS:: NC_000013.11:g.53840780del, NC_000013.10:g.54414915del, NR_047488.1:n.224del

Select item 14904909662.

rs1490490966 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 13:53874426 (GRCh38)
13:54448561 (GRCh37)
Canonical SPDI:: NC_000013.11:53874425:G:A,NC_000013.11:53874425:G:T
Gene:: LINC00558 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000013.11:g.53874426G>A, NC_000013.11:g.53874426G>T, NC_000013.10:g.54448561G>A, NC_000013.10:g.54448561G>T, NR_047488.1:n.1470G>A, NR_047488.1:n.1470G>T

Select item 14904186553.

rs1490418655 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:53840757 (GRCh38)
13:54414892 (GRCh37)
Canonical SPDI:: NC_000013.11:53840756:G:A
Gene:: LINC00558 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.53840757G>A, NC_000013.10:g.54414892G>A, NR_047488.1:n.201G>A

Select item 14902270924.

rs1490227092 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:53875024 (GRCh38)
13:54449159 (GRCh37)
Canonical SPDI:: NC_000013.11:53875023:A:G
Gene:: LINC00558 (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000013.11:g.53875024A>G, NC_000013.10:g.54449159A>G, NR_047488.1:n.2068A>G

Select item 14898951985.

rs1489895198 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:53873587 (GRCh38)
13:54447722 (GRCh37)
Canonical SPDI:: NC_000013.11:53873586:G:A
Gene:: LINC00558 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.53873587G>A, NC_000013.10:g.54447722G>A, NR_047488.1:n.631G>A

Select item 14885387746.

rs1488538774 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 13:53840743 (GRCh38)
13:54414878 (GRCh37)
Canonical SPDI:: NC_000013.11:53840742:A:T
Gene:: LINC00558 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000013.11:g.53840743A>T, NC_000013.10:g.54414878A>T, NR_047488.1:n.187A>T

Select item 14882152227.

rs1488215222 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 13:53873900 (GRCh38)
13:54448035 (GRCh37)
Canonical SPDI:: NC_000013.11:53873899:C:A
Gene:: LINC00558 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.53873900C>A, NC_000013.10:g.54448035C>A, NR_047488.1:n.944C>A

Select item 14880275508.

rs1488027550 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 13:53840793 (GRCh38)
13:54414928 (GRCh37)
Canonical SPDI:: NC_000013.11:53840792:G:C,NC_000013.11:53840792:G:T
Gene:: LINC00558 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000026/7 (TOPMED)
HGVS:: NC_000013.11:g.53840793G>C, NC_000013.11:g.53840793G>T, NC_000013.10:g.54414928G>C, NC_000013.10:g.54414928G>T, NR_047488.1:n.237G>C, NR_047488.1:n.237G>T

Select item 14865786329.

rs1486578632 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 13:53874450 (GRCh38)
13:54448585 (GRCh37)
Canonical SPDI:: NC_000013.11:53874449:C:A
Gene:: LINC00558 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000013.11:g.53874450C>A, NC_000013.10:g.54448585C>A, NR_047488.1:n.1494C>A

Select item 148654991710.

rs1486549917 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:53875608 (GRCh38)
13:54449743 (GRCh37)
Canonical SPDI:: NC_000013.11:53875607:C:T
Gene:: LINC00558 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.53875608C>T, NC_000013.10:g.54449743C>T, NR_047488.1:n.2652C>T

Select item 148653130811.

rs1486531308 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:53874407 (GRCh38)
13:54448542 (GRCh37)
Canonical SPDI:: NC_000013.11:53874406:T:C
Gene:: LINC00558 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: C=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.53874407T>C, NC_000013.10:g.54448542T>C, NR_047488.1:n.1451T>C

Select item 148638016612.

rs1486380166 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:53875196 (GRCh38)
13:54449331 (GRCh37)
Canonical SPDI:: NC_000013.11:53875195:G:C
Gene:: LINC00558 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.53875196G>C, NC_000013.10:g.54449331G>C, NR_047488.1:n.2240G>C

Select item 148610130513.

rs1486101305 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 13:53844393 (GRCh38)
13:54418529 (GRCh37)
Canonical SPDI:: NC_000013.11:53844393:G:GG
Gene:: LINC00558 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
G=0.000015/4 (TOPMED)
HGVS:: NC_000013.11:g.53844394dup, NC_000013.10:g.54418529dup, NR_047488.1:n.304dup

Select item 148500871214.

rs1485008712 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:53874931 (GRCh38)
13:54449066 (GRCh37)
Canonical SPDI:: NC_000013.11:53874930:T:C
Gene:: LINC00558 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000013.11:g.53874931T>C, NC_000013.10:g.54449066T>C, NR_047488.1:n.1975T>C

Select item 148489669715.

rs1484896697 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 13:53876113 (GRCh38)
13:54450248 (GRCh37)
Canonical SPDI:: NC_000013.11:53876112:C:A
Gene:: LINC00558 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.53876113C>A, NC_000013.10:g.54450248C>A, NR_047488.1:n.3157C>A

Select item 148200009016.

rs1482000090 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 13:53873882 (GRCh38)
13:54448017 (GRCh37)
Canonical SPDI:: NC_000013.11:53873881:T:G
Gene:: LINC00558 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.00025/3 (ALFA)
HGVS:: NC_000013.11:g.53873882T>G, NC_000013.10:g.54448017T>G, NR_047488.1:n.926T>G

Select item 148134284017.

rs1481342840 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:53874909 (GRCh38)
13:54449044 (GRCh37)
Canonical SPDI:: NC_000013.11:53874908:C:T
Gene:: LINC00558 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000013.11:g.53874909C>T, NC_000013.10:g.54449044C>T, NR_047488.1:n.1953C>T

Select item 148121637518.

rs1481216375 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 13:53870498 (GRCh38)
13:54444633 (GRCh37)
Canonical SPDI:: NC_000013.11:53870497:T:G
Gene:: LINC00558 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.53870498T>G, NC_000013.10:g.54444633T>G, NR_047488.1:n.466T>G

Select item 148012003119.

rs1480120031 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 13:53873843 (GRCh38)
13:54447978 (GRCh37)
Canonical SPDI:: NC_000013.11:53873842:T:G
Gene:: LINC00558 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by cluster
HGVS:: NC_000013.11:g.53873843T>G, NC_000013.10:g.54447978T>G, NR_047488.1:n.887T>G

Select item 148001040320.

rs1480010403 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 13:53874456 (GRCh38)
13:54448591 (GRCh37)
Canonical SPDI:: NC_000013.11:53874455:T:G
Gene:: LINC00558 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.53874456T>G, NC_000013.10:g.54448591T>G, NR_047488.1:n.1500T>G

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