SNP Links for Nucleotide (Select 523567567) - SNP

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Links from Nucleotide

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Select item 14909265051.

rs1490926505 [Homo sapiens]

Variant type:: DELINS
Alleles:: GA>- [Show Flanks]
Chromosome:: 11:7438025 (GRCh38)
11:7459256 (GRCh37)
Canonical SPDI:: NC_000011.10:7438019:AGAGAGA:AGAGA
Gene:: SYT9 (Varview), SYT9-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGAGA=0.000224/1 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000223/1 (Estonian)
HGVS:: NC_000011.10:g.7438021GA[2], NC_000011.9:g.7459252GA[2], XM_011519904.3:c.*5220GA[2], NR_103855.1:n.4110CT[2]

Select item 14908976102.

rs1490897610 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:7438642 (GRCh38)
11:7459873 (GRCh37)
Canonical SPDI:: NC_000011.10:7438641:G:A
Gene:: SYT9 (Varview), SYT9-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.7438642G>A, NC_000011.9:g.7459873G>A, XM_011519904.3:c.*5841G>A, XM_047426378.1:c.*4G>A, NR_103855.1:n.3493C>T

Select item 14908248123.

rs1490824812 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 11:7437652 (GRCh38)
11:7458884 (GRCh37)
Canonical SPDI:: NC_000011.10:7437652:TT:TTT
Gene:: SYT9 (Varview), SYT9-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTT=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
T=0.000177/3 (TOMMO)
HGVS:: NC_000011.10:g.7437654dup, NC_000011.9:g.7458885dup, XM_011519904.3:c.*4853dup, NR_103855.1:n.4482dup

Select item 14891867004.

rs1489186700 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 11:7440920 (GRCh38)
11:7462151 (GRCh37)
Canonical SPDI:: NC_000011.10:7440919:G:C
Gene:: SYT9 (Varview), SYT9-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000066/1 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000223/1 (Estonian)
HGVS:: NC_000011.10:g.7440920G>C, NC_000011.9:g.7462151G>C, XM_011519904.3:c.*8119G>C, XM_047426378.1:c.*2282G>C, NR_103855.1:n.1215C>G

Select item 14881022065.

rs1488102206 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:7439078 (GRCh38)
11:7460309 (GRCh37)
Canonical SPDI:: NC_000011.10:7439077:C:T
Gene:: SYT9 (Varview), SYT9-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.7439078C>T, NC_000011.9:g.7460309C>T, XM_011519904.3:c.*6277C>T, XM_047426378.1:c.*440C>T, NR_103855.1:n.3057G>A

Select item 14880666196.

rs1488066619 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:7440611 (GRCh38)
11:7461842 (GRCh37)
Canonical SPDI:: NC_000011.10:7440610:G:A
Gene:: SYT9 (Varview), SYT9-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000011.10:g.7440611G>A, NC_000011.9:g.7461842G>A, XM_011519904.3:c.*7810G>A, XM_047426378.1:c.*1973G>A, NR_103855.1:n.1524C>T

Select item 14880530537.

rs1488053053 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 11:7441266 (GRCh38)
11:7462497 (GRCh37)
Canonical SPDI:: NC_000011.10:7441265:T:G
Gene:: SYT9 (Varview), SYT9-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.7441266T>G, NC_000011.9:g.7462497T>G, XM_011519904.3:c.*8465T>G, XM_047426378.1:c.*2628T>G, NR_103855.1:n.869A>C

Select item 14878526978.

rs1487852697 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:7438042 (GRCh38)
11:7459273 (GRCh37)
Canonical SPDI:: NC_000011.10:7438041:G:A
Gene:: SYT9 (Varview), SYT9-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000019/5 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000011.10:g.7438042G>A, NC_000011.9:g.7459273G>A, XM_011519904.3:c.*5241G>A, NR_103855.1:n.4093C>T

Select item 14877393229.

rs1487739322 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 11:7437722 (GRCh38)
11:7458953 (GRCh37)
Canonical SPDI:: NC_000011.10:7437721:G:C
Gene:: SYT9 (Varview), SYT9-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.7437722G>C, NC_000011.9:g.7458953G>C, XM_011519904.3:c.*4921G>C, NR_103855.1:n.4413C>G

Select item 148750090610.

rs1487500906 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:7440083 (GRCh38)
11:7461314 (GRCh37)
Canonical SPDI:: NC_000011.10:7440082:C:G
Gene:: SYT9 (Varview), SYT9-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.7440083C>G, NC_000011.9:g.7461314C>G, XM_011519904.3:c.*7282C>G, XM_047426378.1:c.*1445C>G, NR_103855.1:n.2052G>C

Select item 148305671211.

rs1483056712 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:7437813 (GRCh38)
11:7459044 (GRCh37)
Canonical SPDI:: NC_000011.10:7437812:T:C
Gene:: SYT9 (Varview), SYT9-AS1 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000019/5 (TOPMED)
HGVS:: NC_000011.10:g.7437813T>C, NC_000011.9:g.7459044T>C, XM_011519904.3:c.*5012T>C, NR_103855.1:n.4322A>G

Select item 148237250412.

rs1482372504 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:7440897 (GRCh38)
11:7462128 (GRCh37)
Canonical SPDI:: NC_000011.10:7440896:A:C
Gene:: SYT9 (Varview), SYT9-AS1 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000011.10:g.7440897A>C, NC_000011.9:g.7462128A>C, XM_011519904.3:c.*8096A>C, XM_047426378.1:c.*2259A>C, NR_103855.1:n.1238T>G

Select item 148195342913.

rs1481953429 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:7440954 (GRCh38)
11:7462185 (GRCh37)
Canonical SPDI:: NC_000011.10:7440953:G:A
Gene:: SYT9 (Varview), SYT9-AS1 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.7440954G>A, NC_000011.9:g.7462185G>A, XM_011519904.3:c.*8153G>A, XM_047426378.1:c.*2316G>A, NR_103855.1:n.1181C>T

Select item 148185981314.

rs1481859813 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:7438141 (GRCh38)
11:7459372 (GRCh37)
Canonical SPDI:: NC_000011.10:7438140:G:A
Gene:: SYT9 (Varview), SYT9-AS1 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.7438141G>A, NC_000011.9:g.7459372G>A, XM_011519904.3:c.*5340G>A, NR_103855.1:n.3994C>T

Select item 148137582915.

rs1481375829 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:7437783 (GRCh38)
11:7459014 (GRCh37)
Canonical SPDI:: NC_000011.10:7437782:C:T
Gene:: SYT9 (Varview), SYT9-AS1 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.7437783C>T, NC_000011.9:g.7459014C>T, XM_011519904.3:c.*4982C>T, NR_103855.1:n.4352G>A

Select item 148108573116.

rs1481085731 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 11:7438780 (GRCh38)
11:7460011 (GRCh37)
Canonical SPDI:: NC_000011.10:7438779:C:A,NC_000011.10:7438779:C:T
Gene:: SYT9 (Varview), SYT9-AS1 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.7438780C>A, NC_000011.10:g.7438780C>T, NC_000011.9:g.7460011C>A, NC_000011.9:g.7460011C>T, XM_011519904.3:c.*5979C>A, XM_011519904.3:c.*5979C>T, XM_047426378.1:c.*142C>A, XM_047426378.1:c.*142C>T, NR_103855.1:n.3355G>T, NR_103855.1:n.3355G>A

Select item 148068087317.

rs1480680873 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 11:7438826 (GRCh38)
11:7460057 (GRCh37)
Canonical SPDI:: NC_000011.10:7438825:C:
Gene:: SYT9 (Varview), SYT9-AS1 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000142/2 (ALFA)
-=0.000072/10 (GnomAD)
-=0.000261/69 (TOPMED)
HGVS:: NC_000011.10:g.7438826del, NC_000011.9:g.7460057del, XM_011519904.3:c.*6025del, XM_047426378.1:c.*188del, NR_103855.1:n.3309del

Select item 147980291418.

rs1479802914 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:7439259 (GRCh38)
11:7460490 (GRCh37)
Canonical SPDI:: NC_000011.10:7439258:T:C
Gene:: SYT9 (Varview), SYT9-AS1 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.7439259T>C, NC_000011.9:g.7460490T>C, XM_011519904.3:c.*6458T>C, XM_047426378.1:c.*621T>C, NR_103855.1:n.2876A>G

Select item 147956804919.

rs1479568049 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 11:7440826 (GRCh38)
11:7462057 (GRCh37)
Canonical SPDI:: NC_000011.10:7440825:G:C,NC_000011.10:7440825:G:T
Gene:: SYT9 (Varview), SYT9-AS1 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.7440826G>C, NC_000011.10:g.7440826G>T, NC_000011.9:g.7462057G>C, NC_000011.9:g.7462057G>T, XM_011519904.3:c.*8025G>C, XM_011519904.3:c.*8025G>T, XM_047426378.1:c.*2188G>C, XM_047426378.1:c.*2188G>T, NR_103855.1:n.1309C>G, NR_103855.1:n.1309C>A

Select item 147873004720.

rs1478730047 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:7440718 (GRCh38)
11:7461949 (GRCh37)
Canonical SPDI:: NC_000011.10:7440717:A:G
Gene:: SYT9 (Varview), SYT9-AS1 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.7440718A>G, NC_000011.9:g.7461949A>G, XM_011519904.3:c.*7917A>G, XM_047426378.1:c.*2080A>G, NR_103855.1:n.1417T>C