SNP Links for Nucleotide (Select 549433032) - SNP

Links from Nucleotide

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Select item 14879678361.

rs1487967836 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:8050657 (GRCh38)
10:8092620 (GRCh37)
Canonical SPDI:: NC_000010.11:8050656:C:A
Gene:: GATA3 (Varview), GATA3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.00003/8 (TOPMED)
HGVS:: NC_000010.11:g.8050657C>A, NC_000010.10:g.8092620C>A, NG_015859.1:g.954C>A, NR_024256.1:n.2007G>T, NM_207423.1:c.*207G>T, NR_024255.1:n.1162G>T, NR_104330.1:n.494G>T, NR_104328.1:n.469G>T

Select item 14879636172.

rs1487963617 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:8051288 (GRCh38)
10:8093251 (GRCh37)
Canonical SPDI:: NC_000010.11:8051287:C:A
Gene:: GATA3 (Varview), GATA3-AS1 (Varview)
Functional Consequence:: 5_prime_UTR_variant,non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.0002/1 (ALFA)
A=0.0002/1 (Estonian)
HGVS:: NC_000010.11:g.8051288C>A, NC_000010.10:g.8093251C>A, NG_015859.1:g.1585C>A, XM_005252442.3:c.-2045C>A, XM_047425044.1:c.-2045C>A, NR_024256.1:n.1376G>T, NM_207423.1:c.-47G>T, NR_024255.1:n.1055G>T, NR_104330.1:n.387G>T, NR_104328.1:n.387G>T, NR_104329.1:n.436G>T

Select item 14842056843.

rs1484205684 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:8050586 (GRCh38)
10:8092549 (GRCh37)
Canonical SPDI:: NC_000010.11:8050585:G:T
Gene:: GATA3 (Varview), GATA3-AS1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant,genic_downstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.8050586G>T, NC_000010.10:g.8092549G>T, NG_015859.1:g.883G>T, NR_024256.1:n.2078C>A, NM_207423.1:c.*278C>A, NR_024255.1:n.1233C>A, NR_104330.1:n.565C>A, NR_104328.1:n.540C>A

Select item 14745192694.

rs1474519269 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 10:8051572 (GRCh38)
10:8093535 (GRCh37)
Canonical SPDI:: NC_000010.11:8051571:G:A,NC_000010.11:8051571:G:T
Gene:: GATA3 (Varview), GATA3-AS1 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000010.11:g.8051572G>A, NC_000010.11:g.8051572G>T, NC_000010.10:g.8093535G>A, NC_000010.10:g.8093535G>T, NG_015859.1:g.1869G>A, NG_015859.1:g.1869G>T, XM_005252442.3:c.-1761G>A, XM_005252442.3:c.-1761G>T, XM_047425044.1:c.-1761G>A, XM_047425044.1:c.-1761G>T, NR_024256.1:n.1092C>T, NR_024256.1:n.1092C>A, NM_207423.1:c.-331C>T, NM_207423.1:c.-331C>A, NR_024255.1:n.771C>T, NR_024255.1:n.771C>A, NR_104330.1:n.103C>T, NR_104330.1:n.103C>A, NR_104328.1:n.103C>T, NR_104328.1:n.103C>A, NR_104329.1:n.152C>T, NR_104329.1:n.152C>A

Select item 14670716115.

rs1467071611 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:8050721 (GRCh38)
10:8092684 (GRCh37)
Canonical SPDI:: NC_000010.11:8050720:C:T
Gene:: GATA3 (Varview), GATA3-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000010.11:g.8050721C>T, NC_000010.10:g.8092684C>T, NG_015859.1:g.1018C>T, NR_024256.1:n.1943G>A, NM_207423.1:c.*143G>A, NR_024255.1:n.1098G>A, NR_104330.1:n.430G>A, NR_104328.1:n.405G>A

Select item 14653482376.

rs1465348237 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:8051312 (GRCh38)
10:8093275 (GRCh37)
Canonical SPDI:: NC_000010.11:8051311:C:T
Gene:: GATA3 (Varview), GATA3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,5_prime_UTR_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000224/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000223/1 (Estonian)
HGVS:: NC_000010.11:g.8051312C>T, NC_000010.10:g.8093275C>T, NG_015859.1:g.1609C>T, XM_005252442.3:c.-2021C>T, XM_047425044.1:c.-2021C>T, NR_024256.1:n.1352G>A, NM_207423.1:c.-71G>A, NR_024255.1:n.1031G>A, NR_104330.1:n.363G>A, NR_104328.1:n.363G>A, NR_104329.1:n.412G>A

Select item 14650221817.

rs1465022181 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:8050590 (GRCh38)
10:8092553 (GRCh37)
Canonical SPDI:: NC_000010.11:8050589:C:T
Gene:: GATA3 (Varview), GATA3-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.8050590C>T, NC_000010.10:g.8092553C>T, NG_015859.1:g.887C>T, NR_024256.1:n.2074G>A, NM_207423.1:c.*274G>A, NR_024255.1:n.1229G>A, NR_104330.1:n.561G>A, NR_104328.1:n.536G>A

Select item 14620856908.

rs1462085690 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:8051300 (GRCh38)
10:8093263 (GRCh37)
Canonical SPDI:: NC_000010.11:8051299:C:A
Gene:: GATA3 (Varview), GATA3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,5_prime_UTR_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.8051300C>A, NC_000010.10:g.8093263C>A, NG_015859.1:g.1597C>A, XM_005252442.3:c.-2033C>A, XM_047425044.1:c.-2033C>A, NR_024256.1:n.1364G>T, NM_207423.1:c.-59G>T, NR_024255.1:n.1043G>T, NR_104330.1:n.375G>T, NR_104328.1:n.375G>T, NR_104329.1:n.424G>T

Select item 14597240429.

rs1459724042 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 10:8052463 (GRCh38)
10:8094426 (GRCh37)
Canonical SPDI:: NC_000010.11:8052462:G:A,NC_000010.11:8052462:G:T
Gene:: GATA3 (Varview), GATA3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,5_prime_UTR_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.8052463G>A, NC_000010.11:g.8052463G>T, NC_000010.10:g.8094426G>A, NC_000010.10:g.8094426G>T, NG_015859.1:g.2760G>A, NG_015859.1:g.2760G>T, XM_005252442.3:c.-1685G>A, XM_005252442.3:c.-1685G>T, XM_047425044.1:c.-1685G>A, XM_047425044.1:c.-1685G>T, NR_024256.1:n.1022C>T, NR_024256.1:n.1022C>A, NM_207423.1:c.-401C>T, NM_207423.1:c.-401C>A, NR_024255.1:n.695C>T, NR_024255.1:n.695C>A, NR_104327.1:n.600C>T, NR_104327.1:n.600C>A, NR_104336.1:n.510C>T, NR_104336.1:n.510C>A, NR_104330.1:n.33C>T, NR_104330.1:n.33C>A, NR_104328.1:n.33C>T, NR_104328.1:n.33C>A, NR_104329.1:n.29C>T, NR_104329.1:n.29C>A

Select item 145839027710.

rs1458390277 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 10:8050559 (GRCh38)
10:8092522 (GRCh37)
Canonical SPDI:: NC_000010.11:8050558:G:C
Gene:: GATA3 (Varview), GATA3-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.8050559G>C, NC_000010.10:g.8092522G>C, NG_015859.1:g.856G>C, NR_024256.1:n.2105C>G, NM_207423.1:c.*305C>G, NR_024255.1:n.1260C>G, NR_104330.1:n.592C>G, NR_104328.1:n.567C>G

Select item 145687826711.

rs1456878267 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 10:8050553 (GRCh38)
10:8092516 (GRCh37)
Canonical SPDI:: NC_000010.11:8050552:C:G
Gene:: GATA3 (Varview), GATA3-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.8050553C>G, NC_000010.10:g.8092516C>G, NG_015859.1:g.850C>G, NR_024256.1:n.2111G>C, NM_207423.1:c.*311G>C, NR_024255.1:n.1266G>C, NR_104330.1:n.598G>C, NR_104328.1:n.573G>C

Select item 145663655012.

rs1456636550 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 10:8050680 (GRCh38)
10:8092643 (GRCh37)
Canonical SPDI:: NC_000010.11:8050679:G:A,NC_000010.11:8050679:G:C
Gene:: GATA3 (Varview), GATA3-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.8050680G>A, NC_000010.11:g.8050680G>C, NC_000010.10:g.8092643G>A, NC_000010.10:g.8092643G>C, NG_015859.1:g.977G>A, NG_015859.1:g.977G>C, NR_024256.1:n.1984C>T, NR_024256.1:n.1984C>G, NM_207423.1:c.*184C>T, NM_207423.1:c.*184C>G, NR_024255.1:n.1139C>T, NR_024255.1:n.1139C>G, NR_104330.1:n.471C>T, NR_104330.1:n.471C>G, NR_104328.1:n.446C>T, NR_104328.1:n.446C>G

Select item 145617549413.

rs1456175494 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:8050619 (GRCh38)
10:8092582 (GRCh37)
Canonical SPDI:: NC_000010.11:8050618:T:C
Gene:: GATA3 (Varview), GATA3-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.8050619T>C, NC_000010.10:g.8092582T>C, NG_015859.1:g.916T>C, NR_024256.1:n.2045A>G, NM_207423.1:c.*245A>G, NR_024255.1:n.1200A>G, NR_104330.1:n.532A>G, NR_104328.1:n.507A>G

Select item 145471761014.

rs1454717610 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:8051491 (GRCh38)
10:8093454 (GRCh37)
Canonical SPDI:: NC_000010.11:8051490:T:C
Gene:: GATA3 (Varview), GATA3-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant,non_coding_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000034/9 (TOPMED)
HGVS:: NC_000010.11:g.8051491T>C, NC_000010.10:g.8093454T>C, NG_015859.1:g.1788T>C, XM_005252442.3:c.-1842T>C, XM_047425044.1:c.-1842T>C, NR_024256.1:n.1173A>G, NM_207423.1:c.-250A>G, NR_024255.1:n.852A>G, NR_104330.1:n.184A>G, NR_104328.1:n.184A>G, NR_104329.1:n.233A>G

Select item 144996720915.

rs1449967209 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:8051362 (GRCh38)
10:8093325 (GRCh37)
Canonical SPDI:: NC_000010.11:8051361:C:T
Gene:: GATA3 (Varview), GATA3-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant,non_coding_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.8051362C>T, NC_000010.10:g.8093325C>T, NG_015859.1:g.1659C>T, XM_005252442.3:c.-1971C>T, XM_047425044.1:c.-1971C>T, NR_024256.1:n.1302G>A, NM_207423.1:c.-121G>A, NR_024255.1:n.981G>A, NR_104330.1:n.313G>A, NR_104328.1:n.313G>A, NR_104329.1:n.362G>A

Select item 144961722716.

rs1449617227 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:8050648 (GRCh38)
10:8092611 (GRCh37)
Canonical SPDI:: NC_000010.11:8050647:C:A
Gene:: GATA3 (Varview), GATA3-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.8050648C>A, NC_000010.10:g.8092611C>A, NG_015859.1:g.945C>A, NR_024256.1:n.2016G>T, NM_207423.1:c.*216G>T, NR_024255.1:n.1171G>T, NR_104330.1:n.503G>T, NR_104328.1:n.478G>T

Select item 144928641817.

rs1449286418 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 10:8052405 (GRCh38)
10:8094368 (GRCh37)
Canonical SPDI:: NC_000010.11:8052404:T:A,NC_000010.11:8052404:T:G
Gene:: GATA3 (Varview), GATA3-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00007/1 (ALFA)
HGVS:: NC_000010.11:g.8052405T>A, NC_000010.11:g.8052405T>G, NC_000010.10:g.8094368T>A, NC_000010.10:g.8094368T>G, NG_015859.1:g.2702T>A, NG_015859.1:g.2702T>G, NR_024256.1:n.1080A>T, NR_024256.1:n.1080A>C, NM_207423.1:c.-343A>T, NM_207423.1:c.-343A>C, NR_104327.1:n.658A>T, NR_104327.1:n.658A>C, NR_104336.1:n.568A>T, NR_104336.1:n.568A>C, NR_104330.1:n.91A>T, NR_104330.1:n.91A>C, NR_104328.1:n.91A>T, NR_104328.1:n.91A>C, NR_104329.1:n.87A>T, NR_104329.1:n.87A>C

Select item 144373176718.

rs1443731767 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 10:8051401 (GRCh38)
10:8093364 (GRCh37)
Canonical SPDI:: NC_000010.11:8051400:C:A,NC_000010.11:8051400:C:T
Gene:: GATA3 (Varview), GATA3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant,5_prime_UTR_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000036/5 (GnomAD)
HGVS:: NC_000010.11:g.8051401C>A, NC_000010.11:g.8051401C>T, NC_000010.10:g.8093364C>A, NC_000010.10:g.8093364C>T, NG_015859.1:g.1698C>A, NG_015859.1:g.1698C>T, XM_005252442.3:c.-1932C>A, XM_005252442.3:c.-1932C>T, XM_047425044.1:c.-1932C>A, XM_047425044.1:c.-1932C>T, NR_024256.1:n.1263G>T, NR_024256.1:n.1263G>A, NM_207423.1:c.-160G>T, NM_207423.1:c.-160G>A, NR_024255.1:n.942G>T, NR_024255.1:n.942G>A, NR_104330.1:n.274G>T, NR_104330.1:n.274G>A, NR_104328.1:n.274G>T, NR_104328.1:n.274G>A, NR_104329.1:n.323G>T, NR_104329.1:n.323G>A

Select item 143224691319.

rs1432246913 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 10:8051335 (GRCh38)
10:8093298 (GRCh37)
Canonical SPDI:: NC_000010.11:8051334:C:G,NC_000010.11:8051334:C:T
Gene:: GATA3 (Varview), GATA3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant,5_prime_UTR_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000010.11:g.8051335C>G, NC_000010.11:g.8051335C>T, NC_000010.10:g.8093298C>G, NC_000010.10:g.8093298C>T, NG_015859.1:g.1632C>G, NG_015859.1:g.1632C>T, XM_005252442.3:c.-1998C>G, XM_005252442.3:c.-1998C>T, XM_047425044.1:c.-1998C>G, XM_047425044.1:c.-1998C>T, NR_024256.1:n.1329G>C, NR_024256.1:n.1329G>A, NM_207423.1:c.-94G>C, NM_207423.1:c.-94G>A, NR_024255.1:n.1008G>C, NR_024255.1:n.1008G>A, NR_104330.1:n.340G>C, NR_104330.1:n.340G>A, NR_104328.1:n.340G>C, NR_104328.1:n.340G>A, NR_104329.1:n.389G>C, NR_104329.1:n.389G>A

Select item 143217162720.

rs1432171627 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 10:8050698 (GRCh38)
10:8092661 (GRCh37)
Canonical SPDI:: NC_000010.11:8050697:C:G,NC_000010.11:8050697:C:T
Gene:: GATA3 (Varview), GATA3-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000312/2 (1000Genomes)
HGVS:: NC_000010.11:g.8050698C>G, NC_000010.11:g.8050698C>T, NC_000010.10:g.8092661C>G, NC_000010.10:g.8092661C>T, NG_015859.1:g.995C>G, NG_015859.1:g.995C>T, NR_024256.1:n.1966G>C, NR_024256.1:n.1966G>A, NM_207423.1:c.*166G>C, NM_207423.1:c.*166G>A, NR_024255.1:n.1121G>C, NR_024255.1:n.1121G>A, NR_104330.1:n.453G>C, NR_104330.1:n.453G>A, NR_104328.1:n.428G>C, NR_104328.1:n.428G>A

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