SNP Links for Nucleotide (Select 563319224) - SNP

Select item 14857925811.

rs1485792581 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 1:43838640 (GRCh38)
1:44304312 (GRCh37)
Canonical SPDI:: NC_000001.11:43838639:T:A,NC_000001.11:43838639:T:C
Gene:: ST3GAL3 (Varview), MIR6079 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: C=0.00002/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.43838640T>A, NC_000001.11:g.43838640T>C, NC_000001.10:g.44304312T>A, NC_000001.10:g.44304312T>C, NG_028196.1:g.136095T>A, NG_028196.1:g.136095T>C, NR_106727.1:n.19T>A, NR_106727.1:n.19T>C

Select item 14248223302.

rs1424822330 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:43838679 (GRCh38)
1:44304351 (GRCh37)
Canonical SPDI:: NC_000001.11:43838678:T:C
Gene:: ST3GAL3 (Varview), MIR6079 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: C=0.00002/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.43838679T>C, NC_000001.10:g.44304351T>C, NG_028196.1:g.136134T>C, NR_106727.1:n.58T>C

Select item 12861334153.

rs1286133415 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:43838624 (GRCh38)
1:44304296 (GRCh37)
Canonical SPDI:: NC_000001.11:43838623:C:T
Gene:: ST3GAL3 (Varview), MIR6079 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000018/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.43838624C>T, NC_000001.10:g.44304296C>T, NG_028196.1:g.136079C>T, NR_106727.1:n.3C>T

Select item 12637832074.

rs1263783207 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:43838655 (GRCh38)
1:44304327 (GRCh37)
Canonical SPDI:: NC_000001.11:43838654:T:C
Gene:: ST3GAL3 (Varview), MIR6079 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000001.11:g.43838655T>C, NC_000001.10:g.44304327T>C, NG_028196.1:g.136110T>C, NR_106727.1:n.34T>C

Select item 12587009565.

rs1258700956 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:43838668 (GRCh38)
1:44304340 (GRCh37)
Canonical SPDI:: NC_000001.11:43838667:G:T
Gene:: ST3GAL3 (Varview), MIR6079 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.00002/1 (GnomAD_exomes)
T=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.43838668G>T, NC_000001.10:g.44304340G>T, NG_028196.1:g.136123G>T, NR_106727.1:n.47G>T

Select item 12181099306.

rs1218109930 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 1:43838623 (GRCh38)
1:44304295 (GRCh37)
Canonical SPDI:: NC_000001.11:43838622:C:A,NC_000001.11:43838622:C:T
Gene:: ST3GAL3 (Varview), MIR6079 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
HGVS:: NC_000001.11:g.43838623C>A, NC_000001.11:g.43838623C>T, NC_000001.10:g.44304295C>A, NC_000001.10:g.44304295C>T, NG_028196.1:g.136078C>A, NG_028196.1:g.136078C>T, NR_106727.1:n.2C>A, NR_106727.1:n.2C>T

Select item 11832060877.

rs1183206087 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:43838681 (GRCh38)
1:44304353 (GRCh37)
Canonical SPDI:: NC_000001.11:43838680:G:A
Gene:: ST3GAL3 (Varview), MIR6079 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.43838681G>A, NC_000001.10:g.44304353G>A, NG_028196.1:g.136136G>A, NR_106727.1:n.60G>A

Select item 10026134588.

rs1002613458 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:43838675 (GRCh38)
1:44304347 (GRCh37)
Canonical SPDI:: NC_000001.11:43838674:T:C
Gene:: ST3GAL3 (Varview), MIR6079 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.43838675T>C, NC_000001.10:g.44304347T>C, NG_028196.1:g.136130T>C, NR_106727.1:n.54T>C

Select item 9925231529.

rs992523152 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 1:43838653 (GRCh38)
1:44304325 (GRCh37)
Canonical SPDI:: NC_000001.11:43838652:TTTTTT:TTTTT
Gene:: ST3GAL3 (Varview), MIR6079 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.43838658del, NC_000001.10:g.44304330del, NG_028196.1:g.136113del, NR_106727.1:n.37del

Select item 90692459410.

rs906924594 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:43838648 (GRCh38)
1:44304320 (GRCh37)
Canonical SPDI:: NC_000001.11:43838647:G:T
Gene:: ST3GAL3 (Varview), MIR6079 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.43838648G>T, NC_000001.10:g.44304320G>T, NG_028196.1:g.136103G>T, NR_106727.1:n.27G>T

Select item 76101937311.

rs761019373 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:43838664 (GRCh38)
1:44304336 (GRCh37)
Canonical SPDI:: NC_000001.11:43838663:C:G
Gene:: ST3GAL3 (Varview), MIR6079 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: G=0./0 (TWINSUK)
G=0.0003/1 (ALSPAC)
HGVS:: NC_000001.11:g.43838664C>G, NC_000001.10:g.44304336C>G, NG_028196.1:g.136119C>G, NR_106727.1:n.43C>G

Select item 57779430312.

rs577794303 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:43838646 (GRCh38)
1:44304318 (GRCh37)
Canonical SPDI:: NC_000001.11:43838645:A:G
Gene:: ST3GAL3 (Varview), MIR6079 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0./0 (GnomAD)
G=0.000019/5 (TOPMED)
G=0.000157/8 (GnomAD_exomes)
G=0.000468/2 (1000Genomes)
HGVS:: NC_000001.11:g.43838646A>G, NC_000001.10:g.44304318A>G, NG_028196.1:g.136101A>G, NR_106727.1:n.25A>G

Select item 55782460213.

rs557824602 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:43838639 (GRCh38)
1:44304311 (GRCh37)
Canonical SPDI:: NC_000001.11:43838638:G:A
Gene:: ST3GAL3 (Varview), MIR6079 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000001.11:g.43838639G>A, NC_000001.10:g.44304311G>A, NG_028196.1:g.136094G>A, NR_106727.1:n.18G>A

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