SNP Links for Nucleotide (Select 563319668) - SNP

Select item 13195351901.

rs1319535190 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:67403377 (GRCh38)
10:69163135 (GRCh37)
Canonical SPDI:: NC_000010.11:67403376:G:T
Gene:: CTNNA3 (Varview), MIR7151 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.67403377G>T, NC_000010.10:g.69163135G>T, NG_034072.1:g.297815C>A, NR_106973.1:n.34C>A

Select item 12885484152.

rs1288548415 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:67403369 (GRCh38)
10:69163127 (GRCh37)
Canonical SPDI:: NC_000010.11:67403368:T:C
Gene:: CTNNA3 (Varview), MIR7151 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.67403369T>C, NC_000010.10:g.69163127T>C, NG_034072.1:g.297823A>G, NR_106973.1:n.42A>G

Select item 12759787123.

rs1275978712 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 10:67403380 (GRCh38)
10:69163138 (GRCh37)
Canonical SPDI:: NC_000010.11:67403379:G:C
Gene:: CTNNA3 (Varview), MIR7151 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.67403380G>C, NC_000010.10:g.69163138G>C, NG_034072.1:g.297812C>G, NR_106973.1:n.31C>G

Select item 12749750514.

rs1274975051 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 10:67403355 (GRCh38)
10:69163113 (GRCh37)
Canonical SPDI:: NC_000010.11:67403354:CCC:CC
Gene:: CTNNA3 (Varview), MIR7151 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0.000071/1 (ALFA)
-=0.00003/8 (TOPMED)
-=0.000036/5 (GnomAD)
HGVS:: NC_000010.11:g.67403357del, NC_000010.10:g.69163115del, NG_034072.1:g.297837del, NR_106973.1:n.56del

Select item 12695092645.

rs1269509264 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:67403356 (GRCh38)
10:69163114 (GRCh37)
Canonical SPDI:: NC_000010.11:67403355:C:A
Gene:: CTNNA3 (Varview), MIR7151 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.67403356C>A, NC_000010.10:g.69163114C>A, NG_034072.1:g.297836G>T, NR_106973.1:n.55G>T

Select item 11959176356.

rs1195917635 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:67403371 (GRCh38)
10:69163129 (GRCh37)
Canonical SPDI:: NC_000010.11:67403370:G:A
Gene:: CTNNA3 (Varview), MIR7151 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.67403371G>A, NC_000010.10:g.69163129G>A, NG_034072.1:g.297821C>T, NR_106973.1:n.40C>T

Select item 10443492177.

rs1044349217 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:67403385 (GRCh38)
10:69163143 (GRCh37)
Canonical SPDI:: NC_000010.11:67403384:C:A
Gene:: CTNNA3 (Varview), MIR7151 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: A=0.0038/7 (Korea1K)
C=0.5/1 (Siberian)
HGVS:: NC_000010.11:g.67403385C>A, NC_000010.10:g.69163143C>A, NG_034072.1:g.297807G>T, NR_106973.1:n.26G>T

Select item 9990799188.

rs999079918 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 10:67403368 (GRCh38)
10:69163126 (GRCh37)
Canonical SPDI:: NC_000010.11:67403367:G:A,NC_000010.11:67403367:G:T
Gene:: CTNNA3 (Varview), MIR7151 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000010.11:g.67403368G>A, NC_000010.11:g.67403368G>T, NC_000010.10:g.69163126G>A, NC_000010.10:g.69163126G>T, NG_034072.1:g.297824C>T, NG_034072.1:g.297824C>A, NR_106973.1:n.43C>T, NR_106973.1:n.43C>A

Select item 5679821249.

rs567982124 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:67403393 (GRCh38)
10:69163151 (GRCh37)
Canonical SPDI:: NC_000010.11:67403392:T:C
Gene:: CTNNA3 (Varview), MIR7151 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000107/15 (GnomAD)
C=0.000136/36 (TOPMED)
C=0.000781/4 (1000Genomes)
HGVS:: NC_000010.11:g.67403393T>C, NC_000010.10:g.69163151T>C, NG_034072.1:g.297799A>G, NR_106973.1:n.18A>G

Select item 54818154010.

rs548181540 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:67403364 (GRCh38)
10:69163122 (GRCh37)
Canonical SPDI:: NC_000010.11:67403363:G:T
Gene:: CTNNA3 (Varview), MIR7151 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000035/1 (TOMMO)
T=0.000057/15 (TOPMED)
T=0.000064/9 (GnomAD)
T=0.000546/1 (Korea1K)
T=0.000684/2 (KOREAN)
T=0.000937/5 (1000Genomes)
T=0.009346/2 (Vietnamese)
HGVS:: NC_000010.11:g.67403364G>T, NC_000010.10:g.69163122G>T, NG_034072.1:g.297828C>A, NR_106973.1:n.47C>A

Select item 14098116011.

rs140981160 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:67403355 (GRCh38)
10:69163113 (GRCh37)
Canonical SPDI:: NC_000010.11:67403354:C:T
Gene:: CTNNA3 (Varview), MIR7151 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.003017/57 (ALFA)
T=0.001339/6 (Estonian)
T=0.001667/1 (NorthernSweden)
T=0.002186/11 (1000Genomes)
T=0.003381/895 (TOPMED)
T=0.003451/484 (GnomAD)
T=0.004045/15 (TWINSUK)
T=0.004411/17 (ALSPAC)
T=0.009018/9 (GoNL)
T=0.025/1 (GENOME_DK)
HGVS:: NC_000010.11:g.67403355C>T, NC_000010.10:g.69163113C>T, NG_034072.1:g.297837G>A, NR_106973.1:n.56G>A

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