SNP Links for Nucleotide (Select 564112256) - SNP

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Links from Nucleotide

Items: 1 to 20 of 104

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Select item 14863398291.

rs1486339829 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:65789428 (GRCh38)
11:65556899 (GRCh37)
Canonical SPDI:: NC_000011.10:65789427:G:A
Gene:: OVOL1 (Varview), OVOL1-AS1 (Varview), LOC124902693 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.65789428G>A, NC_000011.9:g.65556899G>A, XM_047427980.1:c.*1593C>T, NR_108085.1:n.117C>T

Select item 14646872452.

rs1464687245 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:65789282 (GRCh38)
11:65556753 (GRCh37)
Canonical SPDI:: NC_000011.10:65789281:G:A
Gene:: OVOL1 (Varview), OVOL1-AS1 (Varview), LOC124902693 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000034/9 (TOPMED)
A=0.00005/7 (GnomAD)
HGVS:: NC_000011.10:g.65789282G>A, NC_000011.9:g.65556753G>A, XM_047427980.1:c.*1739C>T, NR_108085.1:n.263C>T

Select item 14583902733.

rs1458390273 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:65789063 (GRCh38)
11:65556534 (GRCh37)
Canonical SPDI:: NC_000011.10:65789062:G:A
Gene:: OVOL1 (Varview), OVOL1-AS1 (Varview), LOC124902693 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.65789063G>A, NC_000011.9:g.65556534G>A, XM_047427980.1:c.*1958C>T, NR_108085.1:n.482C>T

Select item 14564492144.

rs1456449214 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:65789246 (GRCh38)
11:65556717 (GRCh37)
Canonical SPDI:: NC_000011.10:65789245:G:A
Gene:: OVOL1 (Varview), OVOL1-AS1 (Varview), LOC124902693 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.65789246G>A, NC_000011.9:g.65556717G>A, XM_047427980.1:c.*1775C>T, NR_108085.1:n.299C>T

Select item 14500731235.

rs1450073123 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:65789117 (GRCh38)
11:65556588 (GRCh37)
Canonical SPDI:: NC_000011.10:65789116:A:G
Gene:: OVOL1 (Varview), OVOL1-AS1 (Varview), LOC124902693 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_downstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.65789117A>G, NC_000011.9:g.65556588A>G, XM_047427980.1:c.*1904T>C, NR_108085.1:n.428T>C

Select item 14353705806.

rs1435370580 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:65789366 (GRCh38)
11:65556837 (GRCh37)
Canonical SPDI:: NC_000011.10:65789365:G:T
Gene:: OVOL1 (Varview), OVOL1-AS1 (Varview), LOC124902693 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.65789366G>T, NC_000011.9:g.65556837G>T, XM_047427980.1:c.*1655C>A, NR_108085.1:n.179C>A

Select item 14209171437.

rs1420917143 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:65789131 (GRCh38)
11:65556602 (GRCh37)
Canonical SPDI:: NC_000011.10:65789130:A:G
Gene:: OVOL1 (Varview), OVOL1-AS1 (Varview), LOC124902693 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.65789131A>G, NC_000011.9:g.65556602A>G, XM_047427980.1:c.*1890T>C, NR_108085.1:n.414T>C

Select item 14114389008.

rs1411438900 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:65789120 (GRCh38)
11:65556591 (GRCh37)
Canonical SPDI:: NC_000011.10:65789119:A:G
Gene:: OVOL1 (Varview), OVOL1-AS1 (Varview), LOC124902693 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000011.10:g.65789120A>G, NC_000011.9:g.65556591A>G, XM_047427980.1:c.*1901T>C, NR_108085.1:n.425T>C

Select item 14067347319.

rs1406734731 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:65789269 (GRCh38)
11:65556740 (GRCh37)
Canonical SPDI:: NC_000011.10:65789268:C:T
Gene:: OVOL1 (Varview), OVOL1-AS1 (Varview), LOC124902693 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.65789269C>T, NC_000011.9:g.65556740C>T, XM_047427980.1:c.*1752G>A, NR_108085.1:n.276G>A

Select item 140074613910.

rs1400746139 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:65790815 (GRCh38)
11:65558286 (GRCh37)
Canonical SPDI:: NC_000011.10:65790814:G:A
Gene:: OVOL1 (Varview), OVOL1-AS1 (Varview), LOC124902693 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.65790815G>A, NC_000011.9:g.65558286G>A, XM_047427980.1:c.*1530C>T, NR_108085.1:n.54C>T

Select item 140041171211.

rs1400411712 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:65789350 (GRCh38)
11:65556821 (GRCh37)
Canonical SPDI:: NC_000011.10:65789349:C:T
Gene:: OVOL1 (Varview), OVOL1-AS1 (Varview), LOC124902693 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00004/1 (TOMMO)
HGVS:: NC_000011.10:g.65789350C>T, NC_000011.9:g.65556821C>T, XM_047427980.1:c.*1671G>A, NR_108085.1:n.195G>A

Select item 139698817112.

rs1396988171 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTGGCGGGAGT>- [Show Flanks]
Chromosome:: 11:65789371 (GRCh38)
11:65556842 (GRCh37)
Canonical SPDI:: NC_000011.10:65789368:GTGTGGCGGGAGT:GT
Gene:: OVOL1 (Varview), OVOL1-AS1 (Varview), LOC124902693 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GT=0./0 (ALFA)
-=0.000015/4 (TOPMED)
-=0.000036/5 (GnomAD)
HGVS:: NC_000011.10:g.65789371_65789381del, NC_000011.9:g.65556842_65556852del, XM_047427980.1:c.*1642_*1652del, NR_108085.1:n.166_176del

Select item 139255345813.

rs1392553458 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 11:65789052 (GRCh38)
11:65556523 (GRCh37)
Canonical SPDI:: NC_000011.10:65789051:A:T
Gene:: OVOL1 (Varview), OVOL1-AS1 (Varview), LOC124902693 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.65789052A>T, NC_000011.9:g.65556523A>T, XM_047427980.1:c.*1969T>A, NR_108085.1:n.493T>A

Select item 138798364414.

rs1387983644 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:65789060 (GRCh38)
11:65556531 (GRCh37)
Canonical SPDI:: NC_000011.10:65789059:G:A
Gene:: OVOL1 (Varview), OVOL1-AS1 (Varview), LOC124902693 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.65789060G>A, NC_000011.9:g.65556531G>A, XM_047427980.1:c.*1961C>T, NR_108085.1:n.485C>T

Select item 138727216815.

rs1387272168 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:65789236 (GRCh38)
11:65556707 (GRCh37)
Canonical SPDI:: NC_000011.10:65789235:A:G
Gene:: OVOL1 (Varview), OVOL1-AS1 (Varview), LOC124902693 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00003/8 (TOPMED)
HGVS:: NC_000011.10:g.65789236A>G, NC_000011.9:g.65556707A>G, XM_047427980.1:c.*1785T>C, NR_108085.1:n.309T>C

Select item 138413431716.

rs1384134317 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 11:65789350 (GRCh38)
11:65556822 (GRCh37)
Canonical SPDI:: NC_000011.10:65789350:T:TT
Gene:: OVOL1 (Varview), OVOL1-AS1 (Varview), LOC124902693 (Varview)
Functional Consequence:: non_coding_transcript_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.65789351dup, NC_000011.9:g.65556822dup, XM_047427980.1:c.*1670dup, NR_108085.1:n.194dup

Select item 137317446017.

rs1373174460 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:65789241 (GRCh38)
11:65556712 (GRCh37)
Canonical SPDI:: NC_000011.10:65789240:C:T
Gene:: OVOL1 (Varview), OVOL1-AS1 (Varview), LOC124902693 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,3_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.65789241C>T, NC_000011.9:g.65556712C>T, XM_047427980.1:c.*1780G>A, NR_108085.1:n.304G>A

Select item 137068297518.

rs1370682975 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:65790768 (GRCh38)
11:65558239 (GRCh37)
Canonical SPDI:: NC_000011.10:65790767:C:T
Gene:: OVOL1 (Varview), OVOL1-AS1 (Varview), LOC124902693 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,3_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.65790768C>T, NC_000011.9:g.65558239C>T, XM_047427980.1:c.*1577G>A, NR_108085.1:n.101G>A

Select item 136601849819.

rs1366018498 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:65789242 (GRCh38)
11:65556713 (GRCh37)
Canonical SPDI:: NC_000011.10:65789241:A:G
Gene:: OVOL1 (Varview), OVOL1-AS1 (Varview), LOC124902693 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,3_prime_UTR_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
G=0.000495/8 (TOMMO)
G=0.000546/1 (Korea1K)
G=0.001027/3 (KOREAN)
HGVS:: NC_000011.10:g.65789242A>G, NC_000011.9:g.65556713A>G, XM_047427980.1:c.*1779T>C, NR_108085.1:n.303T>C

Select item 135906171220.

rs1359061712 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 11:65790867 (GRCh38)
11:65558339 (GRCh37)
Canonical SPDI:: NC_000011.10:65790867:GGG:GGGG
Gene:: OVOL1 (Varview), OVOL1-AS1 (Varview), LOC124902693 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant,3_prime_UTR_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGG=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.65790870dup, NC_000011.9:g.65558341dup, XM_047427980.1:c.*1477dup