SNP Links for Nucleotide (Select 568599891) - SNP

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Links from Nucleotide

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Select item 14852702781.

rs1485270278 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:9517227 (GRCh38)
5:9517339 (GRCh37)
Canonical SPDI:: NC_000005.10:9517226:T:C
Gene:: SEMA5A (Varview), SEMA5A-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000005.10:g.9517227T>C, NC_000005.9:g.9517339T>C, NG_016410.1:g.33895A>G, NR_109935.1:n.820T>C

Select item 14840595142.

rs1484059514 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:9516594 (GRCh38)
5:9516706 (GRCh37)
Canonical SPDI:: NC_000005.10:9516593:A:G
Gene:: SEMA5A (Varview), SEMA5A-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000071/1 (TOMMO)
HGVS:: NC_000005.10:g.9516594A>G, NC_000005.9:g.9516706A>G, NG_016410.1:g.34528T>C, NR_109935.1:n.187A>G

Select item 14835557863.

rs1483555786 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:9517384 (GRCh38)
5:9517496 (GRCh37)
Canonical SPDI:: NC_000005.10:9517383:G:A
Gene:: SEMA5A (Varview), SEMA5A-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.9517384G>A, NC_000005.9:g.9517496G>A, NG_016410.1:g.33738C>T, NR_109935.1:n.977G>A

Select item 14804050324.

rs1480405032 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 5:9517712 (GRCh38)
5:9517824 (GRCh37)
Canonical SPDI:: NC_000005.10:9517711:G:A,NC_000005.10:9517711:G:T
Gene:: SEMA5A (Varview), SEMA5A-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.9517712G>A, NC_000005.10:g.9517712G>T, NC_000005.9:g.9517824G>A, NC_000005.9:g.9517824G>T, NG_016410.1:g.33410C>T, NG_016410.1:g.33410C>A, NR_109935.1:n.1305G>A, NR_109935.1:n.1305G>T

Select item 14742625525.

rs1474262552 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:9516810 (GRCh38)
5:9516922 (GRCh37)
Canonical SPDI:: NC_000005.10:9516809:G:A
Gene:: SEMA5A (Varview), SEMA5A-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0./0 (GnomAD)
A=0.000004/1 (TOPMED)
A=0.000035/1 (TOMMO)
A=0.000156/1 (1000Genomes)
G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000005.10:g.9516810G>A, NC_000005.9:g.9516922G>A, NG_016410.1:g.34312C>T, NR_109935.1:n.403G>A

Select item 14737104286.

rs1473710428 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 5:9516686 (GRCh38)
5:9516798 (GRCh37)
Canonical SPDI:: NC_000005.10:9516685:A:T
Gene:: SEMA5A (Varview), SEMA5A-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.9516686A>T, NC_000005.9:g.9516798A>T, NG_016410.1:g.34436T>A, NR_109935.1:n.279A>T

Select item 14720654507.

rs1472065450 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 5:9518061 (GRCh38)
5:9518173 (GRCh37)
Canonical SPDI:: NC_000005.10:9518060:C:A
Gene:: SEMA5A (Varview), SEMA5A-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.9518061C>A, NC_000005.9:g.9518173C>A, NG_016410.1:g.33061G>T, NR_109935.1:n.1654C>A

Select item 14684527938.

rs1468452793 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:9516886 (GRCh38)
5:9516998 (GRCh37)
Canonical SPDI:: NC_000005.10:9516885:C:T
Gene:: SEMA5A (Varview), SEMA5A-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.00004/1 (TOMMO)
HGVS:: NC_000005.10:g.9516886C>T, NC_000005.9:g.9516998C>T, NG_016410.1:g.34236G>A, NR_109935.1:n.479C>T

Select item 14680704739.

rs1468070473 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 5:9517313 (GRCh38)
5:9517425 (GRCh37)
Canonical SPDI:: NC_000005.10:9517312:A:C
Gene:: SEMA5A (Varview), SEMA5A-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.9517313A>C, NC_000005.9:g.9517425A>C, NG_016410.1:g.33809T>G, NR_109935.1:n.906A>C

Select item 146606625310.

rs1466066253 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:9517485 (GRCh38)
5:9517597 (GRCh37)
Canonical SPDI:: NC_000005.10:9517484:C:T
Gene:: SEMA5A (Varview), SEMA5A-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.9517485C>T, NC_000005.9:g.9517597C>T, NG_016410.1:g.33637G>A, NR_109935.1:n.1078C>T

Select item 146470641911.

rs1464706419 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 5:9518082 (GRCh38)
5:9518194 (GRCh37)
Canonical SPDI:: NC_000005.10:9518081:A:C
Gene:: SEMA5A (Varview), SEMA5A-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000005.10:g.9518082A>C, NC_000005.9:g.9518194A>C, NG_016410.1:g.33040T>G, NR_109935.1:n.1675A>C

Select item 145895898112.

rs1458958981 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 5:9516782 (GRCh38)
5:9516894 (GRCh37)
Canonical SPDI:: NC_000005.10:9516781:G:T
Gene:: SEMA5A (Varview), SEMA5A-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.9516782G>T, NC_000005.9:g.9516894G>T, NG_016410.1:g.34340C>A, NR_109935.1:n.375G>T

Select item 145839634613.

rs1458396346 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 5:9518015 (GRCh38)
5:9518127 (GRCh37)
Canonical SPDI:: NC_000005.10:9518014:C:A
Gene:: SEMA5A (Varview), SEMA5A-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.9518015C>A, NC_000005.9:g.9518127C>A, NG_016410.1:g.33107G>T, NR_109935.1:n.1608C>A

Select item 145525513614.

rs1455255136 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:9517334 (GRCh38)
5:9517446 (GRCh37)
Canonical SPDI:: NC_000005.10:9517333:G:A
Gene:: SEMA5A (Varview), SEMA5A-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000005.10:g.9517334G>A, NC_000005.9:g.9517446G>A, NG_016410.1:g.33788C>T, NR_109935.1:n.927G>A

Select item 145233272315.

rs1452332723 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:9516586 (GRCh38)
5:9516698 (GRCh37)
Canonical SPDI:: NC_000005.10:9516585:G:A
Gene:: SEMA5A (Varview), SEMA5A-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.9516586G>A, NC_000005.9:g.9516698G>A, NG_016410.1:g.34536C>T, NR_109935.1:n.179G>A

Select item 145131745216.

rs1451317452 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:9512021 (GRCh38)
5:9512133 (GRCh37)
Canonical SPDI:: NC_000005.10:9512020:C:T
Gene:: SEMA5A (Varview), SEMA5A-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.9512021C>T, NC_000005.9:g.9512133C>T, NG_016410.1:g.39101G>A, NR_109935.1:n.120C>T

Select item 144715896817.

rs1447158968 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 5:9517893 (GRCh38)
5:9518005 (GRCh37)
Canonical SPDI:: NC_000005.10:9517892:C:A,NC_000005.10:9517892:C:T
Gene:: SEMA5A (Varview), SEMA5A-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000005.10:g.9517893C>A, NC_000005.10:g.9517893C>T, NC_000005.9:g.9518005C>A, NC_000005.9:g.9518005C>T, NG_016410.1:g.33229G>T, NG_016410.1:g.33229G>A, NR_109935.1:n.1486C>A, NR_109935.1:n.1486C>T

Select item 144695041618.

rs1446950416 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 5:9516826 (GRCh38)
5:9516938 (GRCh37)
Canonical SPDI:: NC_000005.10:9516825:G:T
Gene:: SEMA5A (Varview), SEMA5A-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.9516826G>T, NC_000005.9:g.9516938G>T, NG_016410.1:g.34296C>A, NR_109935.1:n.419G>T

Select item 144567806919.

rs1445678069 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:9518003 (GRCh38)
5:9518115 (GRCh37)
Canonical SPDI:: NC_000005.10:9518002:T:C
Gene:: SEMA5A (Varview), SEMA5A-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.9518003T>C, NC_000005.9:g.9518115T>C, NG_016410.1:g.33119A>G, NR_109935.1:n.1596T>C

Select item 144181809720.

rs1441818097 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 5:9517159 (GRCh38)
5:9517271 (GRCh37)
Canonical SPDI:: NC_000005.10:9517158:C:A,NC_000005.10:9517158:C:G
Gene:: SEMA5A (Varview), SEMA5A-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.9517159C>A, NC_000005.10:g.9517159C>G, NC_000005.9:g.9517271C>A, NC_000005.9:g.9517271C>G, NG_016410.1:g.33963G>T, NG_016410.1:g.33963G>C, NR_109935.1:n.752C>A, NR_109935.1:n.752C>G