SNP Links for Nucleotide (Select 584277093) - SNP

Links from Nucleotide

Items: 1 to 20 of 937

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Select item 14909641051.

rs1490964105 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 22:39520561 (GRCh38)
22:39916566 (GRCh37)
Canonical SPDI:: NC_000022.11:39520560:C:G,NC_000022.11:39520560:C:T
Gene:: ATF4 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,5_prime_UTR_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000022.11:g.39520561C>G, NC_000022.11:g.39520561C>T, NC_000022.10:g.39916566C>G, NC_000022.10:g.39916566C>T, NM_001675.4:c.-885C>G, NM_001675.4:c.-885C>T

Select item 14908076352.

rs1490807635 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:39521257 (GRCh38)
22:39917262 (GRCh37)
Canonical SPDI:: NC_000022.11:39521256:G:A
Gene:: ATF4 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000049/13 (TOPMED)
A=0.000071/10 (GnomAD)
HGVS:: NC_000022.11:g.39521257G>A, NC_000022.10:g.39917262G>A, NM_001675.4:c.-189G>A, NM_001675.3:c.-189G>A, NM_001675.2:c.-189G>A

Select item 14904227683.

rs1490422768 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAGAG>- [Show Flanks]
Chromosome:: 22:39522562 (GRCh38)
22:39918567 (GRCh37)
Canonical SPDI:: NC_000022.11:39522559:AGAAGAG:AG
Gene:: ATF4 (Varview)
Functional Consequence:: coding_sequence_variant,frameshift_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AG=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.39522562_39522566del, NC_000022.10:g.39918567_39918571del, NM_001675.4:c.1016_1020del, NM_001675.3:c.1016_1020del, NM_001675.2:c.1016_1020del, NM_182810.3:c.1016_1020del, NM_182810.2:c.1016_1020del, NM_182810.1:c.1016_1020del, NP_001666.2:p.Glu339fs, NP_877962.1:p.Glu339fs

Select item 14892942784.

rs1489294278 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 22:39520787 (GRCh38)
22:39916792 (GRCh37)
Canonical SPDI:: NC_000022.11:39520786:G:A,NC_000022.11:39520786:G:C,NC_000022.11:39520786:G:T
Gene:: ATF4 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.39520787G>A, NC_000022.11:g.39520787G>C, NC_000022.11:g.39520787G>T, NC_000022.10:g.39916792G>A, NC_000022.10:g.39916792G>C, NC_000022.10:g.39916792G>T, NM_001675.4:c.-659G>A, NM_001675.4:c.-659G>C, NM_001675.4:c.-659G>T, NM_001675.3:c.-659G>A, NM_001675.3:c.-659G>C, NM_001675.3:c.-659G>T, NM_001675.2:c.-659G>A, NM_001675.2:c.-659G>C, NM_001675.2:c.-659G>T

Select item 14886685265.

rs1488668526 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:39522357 (GRCh38)
22:39918362 (GRCh37)
Canonical SPDI:: NC_000022.11:39522356:G:A
Gene:: ATF4 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
HGVS:: NC_000022.11:g.39522357G>A, NC_000022.10:g.39918362G>A, NM_001675.4:c.811G>A, NM_001675.3:c.811G>A, NM_001675.2:c.811G>A, NM_182810.3:c.811G>A, NM_182810.2:c.811G>A, NM_182810.1:c.811G>A, NP_001666.2:p.Ala271Thr, NP_877962.1:p.Ala271Thr

Select item 14878687486.

rs1487868748 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 22:39522421 (GRCh38)
22:39918426 (GRCh37)
Canonical SPDI:: NC_000022.11:39522420:C:G,NC_000022.11:39522420:C:T
Gene:: ATF4 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000031/1 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.39522421C>G, NC_000022.11:g.39522421C>T, NC_000022.10:g.39918426C>G, NC_000022.10:g.39918426C>T, NM_001675.4:c.875C>G, NM_001675.4:c.875C>T, NM_001675.3:c.875C>G, NM_001675.3:c.875C>T, NM_001675.2:c.875C>G, NM_001675.2:c.875C>T, NM_182810.3:c.875C>G, NM_182810.3:c.875C>T, NM_182810.2:c.875C>G, NM_182810.2:c.875C>T, NM_182810.1:c.875C>G, NM_182810.1:c.875C>T, NP_001666.2:p.Ala292Gly, NP_001666.2:p.Ala292Val, NP_877962.1:p.Ala292Gly, NP_877962.1:p.Ala292Val

Select item 14877852637.

rs1487785263 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:39520860 (GRCh38)
22:39916865 (GRCh37)
Canonical SPDI:: NC_000022.11:39520859:T:C
Gene:: ATF4 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000019/5 (TOPMED)
C=0.000043/6 (GnomAD)
HGVS:: NC_000022.11:g.39520860T>C, NC_000022.10:g.39916865T>C, NM_001675.4:c.-586T>C, NM_001675.3:c.-586T>C, NM_001675.2:c.-586T>C

Select item 14861955688.

rs1486195568 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:39521000 (GRCh38)
22:39917005 (GRCh37)
Canonical SPDI:: NC_000022.11:39520999:C:T
Gene:: ATF4 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.39521000C>T, NC_000022.10:g.39917005C>T, NM_001675.4:c.-446C>T, NM_001675.3:c.-446C>T, NM_001675.2:c.-446C>T

Select item 14859795519.

rs1485979551 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:39520731 (GRCh38)
22:39916736 (GRCh37)
Canonical SPDI:: NC_000022.11:39520730:C:T
Gene:: ATF4 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.39520731C>T, NC_000022.10:g.39916736C>T, NM_001675.4:c.-715C>T, NM_001675.3:c.-715C>T, NM_001675.2:c.-715C>T, NM_182810.3:c.-113C>T, NM_182810.2:c.-113C>T, NM_182810.1:c.-113C>T

Select item 148440088110.

rs1484400881 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:39522320 (GRCh38)
22:39918325 (GRCh37)
Canonical SPDI:: NC_000022.11:39522319:C:T
Gene:: ATF4 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (GnomAD_exomes)
T=0.000546/1 (Korea1K)
HGVS:: NC_000022.11:g.39522320C>T, NC_000022.10:g.39918325C>T, NM_001675.4:c.774C>T, NM_001675.3:c.774C>T, NM_001675.2:c.774C>T, NM_182810.3:c.774C>T, NM_182810.2:c.774C>T, NM_182810.1:c.774C>T

Select item 148427888711.

rs1484278887 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 22:39520576 (GRCh38)
22:39916581 (GRCh37)
Canonical SPDI:: NC_000022.11:39520575:C:A,NC_000022.11:39520575:C:G,NC_000022.11:39520575:C:T
Gene:: ATF4 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
T=0.000071/10 (GnomAD)
HGVS:: NC_000022.11:g.39520576C>A, NC_000022.11:g.39520576C>G, NC_000022.11:g.39520576C>T, NC_000022.10:g.39916581C>A, NC_000022.10:g.39916581C>G, NC_000022.10:g.39916581C>T, NM_001675.4:c.-870C>A, NM_001675.4:c.-870C>G, NM_001675.4:c.-870C>T, NM_001675.3:c.-870C>A, NM_001675.3:c.-870C>G, NM_001675.3:c.-870C>T, NM_001675.2:c.-870C>A, NM_001675.2:c.-870C>G, NM_001675.2:c.-870C>T, NM_182810.3:c.-268C>A, NM_182810.3:c.-268C>G, NM_182810.3:c.-268C>T, NM_182810.2:c.-268C>A, NM_182810.2:c.-268C>G, NM_182810.2:c.-268C>T, NM_182810.1:c.-268C>A, NM_182810.1:c.-268C>G, NM_182810.1:c.-268C>T

Select item 148342535612.

rs1483425356 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 22:39520611 (GRCh38)
22:39916616 (GRCh37)
Canonical SPDI:: NC_000022.11:39520610:T:C,NC_000022.11:39520610:T:G
Gene:: ATF4 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000008/1 (GnomAD)
HGVS:: NC_000022.11:g.39520611T>C, NC_000022.11:g.39520611T>G, NC_000022.10:g.39916616T>C, NC_000022.10:g.39916616T>G, NM_001675.4:c.-835T>C, NM_001675.4:c.-835T>G, NM_001675.3:c.-835T>C, NM_001675.3:c.-835T>G, NM_001675.2:c.-835T>C, NM_001675.2:c.-835T>G, NM_182810.3:c.-233T>C, NM_182810.3:c.-233T>G, NM_182810.2:c.-233T>C, NM_182810.2:c.-233T>G, NM_182810.1:c.-233T>C, NM_182810.1:c.-233T>G

Select item 148298927813.

rs1482989278 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:39521035 (GRCh38)
22:39917040 (GRCh37)
Canonical SPDI:: NC_000022.11:39521034:C:T
Gene:: ATF4 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000156/1 (1000Genomes)
T=0.000344/91 (TOPMED)
T=0.000393/55 (GnomAD)
HGVS:: NC_000022.11:g.39521035C>T, NC_000022.10:g.39917040C>T, NM_001675.4:c.-411C>T, NM_001675.3:c.-411C>T, NM_001675.2:c.-411C>T

Select item 148277405314.

rs1482774053 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:39521068 (GRCh38)
22:39917073 (GRCh37)
Canonical SPDI:: NC_000022.11:39521067:G:A
Gene:: ATF4 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000022.11:g.39521068G>A, NC_000022.10:g.39917073G>A, NM_001675.4:c.-378G>A, NM_001675.3:c.-378G>A, NM_001675.2:c.-378G>A

Select item 148179136915.

rs1481791369 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 22:39520867 (GRCh38)
22:39916872 (GRCh37)
Canonical SPDI:: NC_000022.11:39520866:C:A
Gene:: ATF4 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000043/6 (GnomAD)
A=0.000072/19 (TOPMED)
HGVS:: NC_000022.11:g.39520867C>A, NC_000022.10:g.39916872C>A, NM_001675.4:c.-579C>A, NM_001675.3:c.-579C>A, NM_001675.2:c.-579C>A

Select item 148113731616.

rs1481137316 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:39521298 (GRCh38)
22:39917303 (GRCh37)
Canonical SPDI:: NC_000022.11:39521297:T:C
Gene:: ATF4 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.39521298T>C, NC_000022.10:g.39917303T>C, NM_001675.4:c.-148T>C, NM_001675.3:c.-148T>C, NM_001675.2:c.-148T>C

Select item 148107822517.

rs1481078225 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 22:39520632 (GRCh38)
22:39916637 (GRCh37)
Canonical SPDI:: NC_000022.11:39520631:A:G,NC_000022.11:39520631:A:T
Gene:: ATF4 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000022.11:g.39520632A>G, NC_000022.11:g.39520632A>T, NC_000022.10:g.39916637A>G, NC_000022.10:g.39916637A>T, NM_001675.4:c.-814A>G, NM_001675.4:c.-814A>T, NM_001675.3:c.-814A>G, NM_001675.3:c.-814A>T, NM_001675.2:c.-814A>G, NM_001675.2:c.-814A>T, NM_182810.3:c.-212A>G, NM_182810.3:c.-212A>T, NM_182810.2:c.-212A>G, NM_182810.2:c.-212A>T, NM_182810.1:c.-212A>G, NM_182810.1:c.-212A>T

Select item 148048147518.

rs1480481475 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:39521436 (GRCh38)
22:39917441 (GRCh37)
Canonical SPDI:: NC_000022.11:39521435:G:A
Gene:: ATF4 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency
MAF:: A=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000022.11:g.39521436G>A, NC_000022.10:g.39917441G>A, NM_001675.4:c.-10G>A, NM_001675.3:c.-10G>A, NM_001675.2:c.-10G>A, NM_182810.3:c.-10G>A, NM_182810.2:c.-10G>A, NM_182810.1:c.-10G>A

Select item 147970417619.

rs1479704176 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:39522198 (GRCh38)
22:39918203 (GRCh37)
Canonical SPDI:: NC_000022.11:39522197:G:A
Gene:: ATF4 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.39522198G>A, NC_000022.10:g.39918203G>A, NM_001675.4:c.652G>A, NM_001675.3:c.652G>A, NM_001675.2:c.652G>A, NM_182810.3:c.652G>A, NM_182810.2:c.652G>A, NM_182810.1:c.652G>A, NP_001666.2:p.Asp218Asn, NP_877962.1:p.Asp218Asn

Select item 147833807520.

rs1478338075 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:39521238 (GRCh38)
22:39917243 (GRCh37)
Canonical SPDI:: NC_000022.11:39521237:C:T
Gene:: ATF4 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000022.11:g.39521238C>T, NC_000022.10:g.39917243C>T, NM_001675.4:c.-208C>T, NM_001675.3:c.-208C>T, NM_001675.2:c.-208C>T

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