SNP Links for Nucleotide (Select 619329042) - SNP

Links from Nucleotide

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Select item 14908787111.

rs1490878711 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 6:167670382 (GRCh38)
6:168071062 (GRCh37)
Canonical SPDI:: NC_000006.12:167670381:T:A,NC_000006.12:167670381:T:G
Gene:: LINC02538 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000006.12:g.167670382T>A, NC_000006.12:g.167670382T>G, NC_000006.11:g.168071062T>A, NC_000006.11:g.168071062T>G, NR_117091.1:n.980A>T, NR_117091.1:n.980A>C, NM_001023565.1:c.-742A>T, NM_001023565.1:c.-742A>C

Select item 14904843702.

rs1490484370 has merged into rs201479702 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 6:167670522 (GRCh38)
6:168071203 (GRCh37)
Canonical SPDI:: NC_000006.12:167670522:GGGG:GGGGG
Gene:: LINC02538 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGG=0.016037/297 (ALFA)
G=0.011667/7 (NorthernSweden)
G=0.013352/1872 (GnomAD)
G=0.013998/3705 (TOPMED)
G=0.014293/53 (TWINSUK)
G=0.01503/15 (GoNL)
G=0.017634/79 (Estonian)
G=0.017903/69 (ALSPAC)
G=0.018692/4 (Vietnamese)
G=0.026201/48 (Korea1K)
G=0.03045/195 (1000Genomes)
G=0.057046/956 (TOMMO)
HGVS:: NC_000006.12:g.167670526dup, NC_000006.11:g.168071206dup, NR_117091.1:n.839dup, NM_001023565.1:c.-883dup

Select item 14886749803.

rs1488674980 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:167667659 (GRCh38)
6:168068339 (GRCh37)
Canonical SPDI:: NC_000006.12:167667658:G:A
Gene:: LINC02538 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000006.12:g.167667659G>A, NC_000006.11:g.168068339G>A, NR_117091.1:n.3703C>T, NM_001023565.1:c.*1490C>T

Select item 14884346574.

rs1488434657 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 6:167679212 (GRCh38)
6:168079892 (GRCh37)
Canonical SPDI:: NC_000006.12:167679211:A:T
Gene:: LINC02538 (Varview), LOC124901465 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.167679212A>T, NC_000006.11:g.168079892A>T, NR_117091.1:n.12T>A, NM_001023565.1:c.-1710T>A

Select item 14876846185.

rs1487684618 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:167679080 (GRCh38)
6:168079760 (GRCh37)
Canonical SPDI:: NC_000006.12:167679079:C:T
Gene:: LINC02538 (Varview), LOC124901465 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.167679080C>T, NC_000006.11:g.168079760C>T, NR_117091.1:n.144G>A, NM_001023565.1:c.-1578G>A

Select item 14875567166.

rs1487556716 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:167670147 (GRCh38)
6:168070827 (GRCh37)
Canonical SPDI:: NC_000006.12:167670146:C:A
Gene:: LINC02538 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.00007/1 (ALFA)
HGVS:: NC_000006.12:g.167670147C>A, NC_000006.11:g.168070827C>A, NR_117091.1:n.1215G>T, NM_001023565.1:c.-507G>T

Select item 14860065347.

rs1486006534 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:167667880 (GRCh38)
6:168068560 (GRCh37)
Canonical SPDI:: NC_000006.12:167667879:C:T
Gene:: LINC02538 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000023/6 (TOPMED)
HGVS:: NC_000006.12:g.167667880C>T, NC_000006.11:g.168068560C>T, NR_117091.1:n.3482G>A, NM_001023565.1:c.*1269G>A

Select item 14856004058.

rs1485600405 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 6:167668067 (GRCh38)
6:168068747 (GRCh37)
Canonical SPDI:: NC_000006.12:167668066:C:G
Gene:: LINC02538 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.167668067C>G, NC_000006.11:g.168068747C>G, NR_117091.1:n.3295G>C, NM_001023565.1:c.*1082G>C

Select item 14846171159.

rs1484617115 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:167667681 (GRCh38)
6:168068361 (GRCh37)
Canonical SPDI:: NC_000006.12:167667680:C:A
Gene:: LINC02538 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.167667681C>A, NC_000006.11:g.168068361C>A, NR_117091.1:n.3681G>T, NM_001023565.1:c.*1468G>T

Select item 148439043210.

rs1484390432 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:167667920 (GRCh38)
6:168068600 (GRCh37)
Canonical SPDI:: NC_000006.12:167667919:A:G
Gene:: LINC02538 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000026/7 (TOPMED)
HGVS:: NC_000006.12:g.167667920A>G, NC_000006.11:g.168068600A>G, NR_117091.1:n.3442T>C, NM_001023565.1:c.*1229T>C

Select item 148373462111.

rs1483734621 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:167669508 (GRCh38)
6:168070188 (GRCh37)
Canonical SPDI:: NC_000006.12:167669507:C:T
Gene:: LINC02538 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000006.12:g.167669508C>T, NC_000006.11:g.168070188C>T, NR_117091.1:n.1854G>A, NM_001023565.1:c.133G>A

Select item 148226023612.

rs1482260236 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 6:167679066 (GRCh38)
6:168079746 (GRCh37)
Canonical SPDI:: NC_000006.12:167679065:C:G
Gene:: LINC02538 (Varview), LOC124901465 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.167679066C>G, NC_000006.11:g.168079746C>G, NR_117091.1:n.158G>C, NM_001023565.1:c.-1564G>C

Select item 148218150513.

rs1482181505 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:167666855 (GRCh38)
6:168067535 (GRCh37)
Canonical SPDI:: NC_000006.12:167666854:T:C
Gene:: LINC02538 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.167666855T>C, NC_000006.11:g.168067535T>C, NR_117091.1:n.4507A>G, NM_001023565.1:c.*2294A>G

Select item 148217539814.

rs1482175398 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:167670388 (GRCh38)
6:168071068 (GRCh37)
Canonical SPDI:: NC_000006.12:167670387:C:T
Gene:: LINC02538 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.167670388C>T, NC_000006.11:g.168071068C>T, NR_117091.1:n.974G>A, NM_001023565.1:c.-748G>A

Select item 148214752015.

rs1482147520 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:167669643 (GRCh38)
6:168070323 (GRCh37)
Canonical SPDI:: NC_000006.12:167669642:A:G
Gene:: LINC02538 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000006.12:g.167669643A>G, NC_000006.11:g.168070323A>G, NR_117091.1:n.1719T>C, NM_001023565.1:c.-3T>C

Select item 148197565016.

rs1481975650 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:167669378 (GRCh38)
6:168070058 (GRCh37)
Canonical SPDI:: NC_000006.12:167669377:G:A
Gene:: LINC02538 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000312/2 (1000Genomes)
HGVS:: NC_000006.12:g.167669378G>A, NC_000006.11:g.168070058G>A, NR_117091.1:n.1984C>T, NM_001023565.1:c.263C>T

Select item 148131582517.

rs1481315825 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 6:167670107 (GRCh38)
6:168070787 (GRCh37)
Canonical SPDI:: NC_000006.12:167670106:C:A
Gene:: LINC02538 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.167670107C>A, NC_000006.11:g.168070787C>A, NR_117091.1:n.1255G>T, NM_001023565.1:c.-467G>T

Select item 148103662318.

rs1481036623 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:167666845 (GRCh38)
6:168067525 (GRCh37)
Canonical SPDI:: NC_000006.12:167666844:T:C
Gene:: LINC02538 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.167666845T>C, NC_000006.11:g.168067525T>C, NR_117091.1:n.4517A>G, NM_001023565.1:c.*2304A>G

Select item 147995749519.

rs1479957495 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 6:167667991 (GRCh38)
6:168068671 (GRCh37)
Canonical SPDI:: NC_000006.12:167667990:C:A,NC_000006.12:167667990:C:G,NC_000006.12:167667990:C:T
Gene:: LINC02538 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.167667991C>A, NC_000006.12:g.167667991C>G, NC_000006.12:g.167667991C>T, NC_000006.11:g.168068671C>A, NC_000006.11:g.168068671C>G, NC_000006.11:g.168068671C>T, NR_117091.1:n.3371G>T, NR_117091.1:n.3371G>C, NR_117091.1:n.3371G>A, NM_001023565.1:c.*1158G>T, NM_001023565.1:c.*1158G>C, NM_001023565.1:c.*1158G>A

Select item 147975053620.

rs1479750536 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 6:167678115 (GRCh38)
6:168078795 (GRCh37)
Canonical SPDI:: NC_000006.12:167678114:C:G,NC_000006.12:167678114:C:T
Gene:: LINC02538 (Varview), LOC124901465 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.167678115C>G, NC_000006.12:g.167678115C>T, NC_000006.11:g.168078795C>G, NC_000006.11:g.168078795C>T, NR_117091.1:n.397G>C, NR_117091.1:n.397G>A, NM_001023565.1:c.-1325G>C, NM_001023565.1:c.-1325G>A

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