SNP Links for Nucleotide (Select 652700216) - SNP

Links from Nucleotide

Items: 1 to 20 of 112

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Select item 14896899221.

rs1489689922 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 9:101469351 (GRCh38)
9:104231633 (GRCh37)
Canonical SPDI:: NC_000009.12:101469350:G:T
Gene:: TMEM246-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000009.12:g.101469351G>T, NC_000009.11:g.104231633G>T, NR_121574.1:n.30G>T, NR_121575.1:n.30G>T

Select item 14791706432.

rs1479170643 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:101469431 (GRCh38)
9:104231713 (GRCh37)
Canonical SPDI:: NC_000009.12:101469430:G:A
Gene:: TMEM246-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.101469431G>A, NC_000009.11:g.104231713G>A, NR_121574.1:n.110G>A, NR_121575.1:n.110G>A

Select item 14756265283.

rs1475626528 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:101479887 (GRCh38)
9:104242169 (GRCh37)
Canonical SPDI:: NC_000009.12:101479886:C:A
Gene:: PGAP4 (Varview), TMEM246-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.101479887C>A, NC_000009.11:g.104242169C>A, NR_121573.1:n.385C>A, NR_121574.1:n.347C>A, NR_121576.1:n.218C>A

Select item 14684228404.

rs1468422840 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:101469588 (GRCh38)
9:104231870 (GRCh37)
Canonical SPDI:: NC_000009.12:101469587:T:A
Gene:: TMEM246-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.101469588T>A, NC_000009.11:g.104231870T>A, NR_121574.1:n.267T>A, NR_121575.1:n.267T>A

Select item 14660017135.

rs1466001713 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:101469522 (GRCh38)
9:104231804 (GRCh37)
Canonical SPDI:: NC_000009.12:101469521:A:C
Gene:: TMEM246-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000084/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.101469522A>C, NC_000009.11:g.104231804A>C, NR_121574.1:n.201A>C, NR_121575.1:n.201A>C

Select item 14607937846.

rs1460793784 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 9:101481416 (GRCh38)
9:104243698 (GRCh37)
Canonical SPDI:: NC_000009.12:101481415:T:G
Gene:: PGAP4 (Varview), TMEM246-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.101481416T>G, NC_000009.11:g.104243698T>G, NR_121573.1:n.475T>G, NR_121574.1:n.437T>G, NR_121575.1:n.353T>G, NR_121576.1:n.308T>G

Select item 14542593207.

rs1454259320 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:101469337 (GRCh38)
9:104231619 (GRCh37)
Canonical SPDI:: NC_000009.12:101469336:T:C
Gene:: TMEM246-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000224/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000223/1 (Estonian)
HGVS:: NC_000009.12:g.101469337T>C, NC_000009.11:g.104231619T>C, NR_121574.1:n.16T>C, NR_121575.1:n.16T>C

Select item 14469637948.

rs1446963794 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:101481391 (GRCh38)
9:104243673 (GRCh37)
Canonical SPDI:: NC_000009.12:101481390:T:C
Gene:: PGAP4 (Varview), TMEM246-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000019/5 (TOPMED)
HGVS:: NC_000009.12:g.101481391T>C, NC_000009.11:g.104243673T>C, NR_121573.1:n.450T>C, NR_121574.1:n.412T>C, NR_121575.1:n.328T>C, NR_121576.1:n.283T>C

Select item 14212594829.

rs1421259482 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:101479910 (GRCh38)
9:104242192 (GRCh37)
Canonical SPDI:: NC_000009.12:101479909:G:C
Gene:: PGAP4 (Varview), TMEM246-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000029/4 (GnomAD)
HGVS:: NC_000009.12:g.101479910G>C, NC_000009.11:g.104242192G>C, NR_121573.1:n.408G>C, NR_121574.1:n.370G>C, NR_121576.1:n.241G>C

Select item 140161454310.

rs1401614543 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:101479870 (GRCh38)
9:104242152 (GRCh37)
Canonical SPDI:: NC_000009.12:101479869:G:C
Gene:: PGAP4 (Varview), TMEM246-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.101479870G>C, NC_000009.11:g.104242152G>C, NR_121573.1:n.368G>C, NR_121574.1:n.330G>C, NR_121576.1:n.201G>C

Select item 139260942711.

rs1392609427 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:101469392 (GRCh38)
9:104231674 (GRCh37)
Canonical SPDI:: NC_000009.12:101469391:G:A
Gene:: TMEM246-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.101469392G>A, NC_000009.11:g.104231674G>A, NR_121574.1:n.71G>A, NR_121575.1:n.71G>A

Select item 138968903912.

rs1389689039 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:101469412 (GRCh38)
9:104231694 (GRCh37)
Canonical SPDI:: NC_000009.12:101469411:G:C
Gene:: TMEM246-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.101469412G>C, NC_000009.11:g.104231694G>C, NR_121574.1:n.91G>C, NR_121575.1:n.91G>C

Select item 138762018913.

rs1387620189 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:101469391 (GRCh38)
9:104231673 (GRCh37)
Canonical SPDI:: NC_000009.12:101469390:T:C
Gene:: TMEM246-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000029/4 (GnomAD)
C=0.000053/14 (TOPMED)
HGVS:: NC_000009.12:g.101469391T>C, NC_000009.11:g.104231673T>C, NR_121574.1:n.70T>C, NR_121575.1:n.70T>C

Select item 138097135914.

rs1380971359 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:101481392 (GRCh38)
9:104243674 (GRCh37)
Canonical SPDI:: NC_000009.12:101481391:G:A
Gene:: PGAP4 (Varview), TMEM246-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.101481392G>A, NC_000009.11:g.104243674G>A, NR_121573.1:n.451G>A, NR_121574.1:n.413G>A, NR_121575.1:n.329G>A, NR_121576.1:n.284G>A

Select item 138081395715.

rs1380813957 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:101481423 (GRCh38)
9:104243705 (GRCh37)
Canonical SPDI:: NC_000009.12:101481422:A:G
Gene:: PGAP4 (Varview), TMEM246-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.101481423A>G, NC_000009.11:g.104243705A>G, NR_121573.1:n.482A>G, NR_121574.1:n.444A>G, NR_121575.1:n.360A>G, NR_121576.1:n.315A>G

Select item 138003048016.

rs1380030480 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:101481430 (GRCh38)
9:104243712 (GRCh37)
Canonical SPDI:: NC_000009.12:101481429:C:T
Gene:: PGAP4 (Varview), TMEM246-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000009.12:g.101481430C>T, NC_000009.11:g.104243712C>T, NR_121573.1:n.489C>T, NR_121574.1:n.451C>T, NR_121575.1:n.367C>T, NR_121576.1:n.322C>T

Select item 135304479917.

rs1353044799 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:101481376 (GRCh38)
9:104243658 (GRCh37)
Canonical SPDI:: NC_000009.12:101481375:C:T
Gene:: PGAP4 (Varview), TMEM246-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
T=0.000106/3 (TOMMO)
T=0.000684/2 (KOREAN)
HGVS:: NC_000009.12:g.101481376C>T, NC_000009.11:g.104243658C>T, NR_121573.1:n.435C>T, NR_121574.1:n.397C>T, NR_121575.1:n.313C>T, NR_121576.1:n.268C>T

Select item 134380092018.

rs1343800920 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:101469381 (GRCh38)
9:104231663 (GRCh37)
Canonical SPDI:: NC_000009.12:101469380:A:G
Gene:: TMEM246-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.101469381A>G, NC_000009.11:g.104231663A>G, NR_121574.1:n.60A>G, NR_121575.1:n.60A>G

Select item 134182483919.

rs1341824839 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTT>- [Show Flanks]
Chromosome:: 9:101481499 (GRCh38)
9:104243781 (GRCh37)
Canonical SPDI:: NC_000009.12:101481496:TTCTT:TT
Gene:: PGAP4 (Varview), TMEM246-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.101481499_101481501del, NC_000009.11:g.104243781_104243783del, NR_121573.1:n.558_560del, NR_121574.1:n.520_522del, NR_121575.1:n.436_438del, NR_121576.1:n.391_393del

Select item 133309409520.

rs1333094095 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 9:101469517 (GRCh38)
9:104231799 (GRCh37)
Canonical SPDI:: NC_000009.12:101469516:TTT:TT
Gene:: TMEM246-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
-=0.000015/4 (TOPMED)
HGVS:: NC_000009.12:g.101469519del, NC_000009.11:g.104231801del, NR_121574.1:n.198del, NR_121575.1:n.198del

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