SNP Links for Nucleotide (Select 662033940) - SNP

Links from Nucleotide

Items: 1 to 20 of 1000

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Select item 14909415901.

rs1490941590 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:15125691 (GRCh38)
16:15219548 (GRCh37)
Canonical SPDI:: NC_000016.10:15125690:C:G
Gene:: PDXDC1 (Varview), PKD1P6-NPIPP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000016.10:g.15125691C>G, NC_000016.9:g.15219548C>G, NG_002799.5:g.29283G>C, NT_187607.1:g.539564G>C, NM_001282511.3:c.-210G>C, NR_123722.1:n.1888G>C, NR_123721.1:n.4027G>C

Select item 14908897342.

rs1490889734 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:15127491 (GRCh38)
16:15221348 (GRCh37)
Canonical SPDI:: NC_000016.10:15127490:G:A
Gene:: PDXDC1 (Varview), PKD1P6-NPIPP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000006/1 (GnomAD_exomes)
A=0.000014/2 (GnomAD)
A=0.000038/10 (TOPMED)
HGVS:: NC_000016.10:g.15127491G>A, NC_000016.9:g.15221348G>A, NG_002799.5:g.27483C>T, NT_187607.1:g.537764C>T, NM_001282511.3:c.-348C>T, NR_123722.1:n.1750C>T, NR_123721.1:n.3889C>T

Select item 14908318013.

rs1490831801 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:15135306 (GRCh38)
16:15229163 (GRCh37)
Canonical SPDI:: NC_000016.10:15135305:G:A
Gene:: PDXDC1 (Varview), MIR6511B2 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_downstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.15135306G>A, NC_000016.9:g.15229163G>A, NG_002799.5:g.19668C>T, NT_187607.1:g.527202C>T, NR_123721.1:n.506C>T

Select item 14904428314.

rs1490442831 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:15131414 (GRCh38)
16:15225271 (GRCh37)
Canonical SPDI:: NC_000016.10:15131413:G:A
Gene:: PDXDC1 (Varview), PKD1P6-NPIPP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000016.10:g.15131414G>A, NC_000016.9:g.15225271G>A, NG_002799.5:g.23560C>T, NT_187607.1:g.533841C>T, NR_123722.1:n.188C>T, NR_123721.1:n.2327C>T

Select item 14902669285.

rs1490266928 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:15135697 (GRCh38)
16:15229554 (GRCh37)
Canonical SPDI:: NC_000016.10:15135696:G:A
Gene:: PDXDC1 (Varview), MIR6511B2 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_downstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000108/2 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000016.10:g.15135697G>A, NC_000016.9:g.15229554G>A, NG_002799.5:g.19277C>T, NT_187607.1:g.526811C>T, NR_123721.1:n.334C>T

Select item 14897736126.

rs1489773612 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 16:15106138 (GRCh38)
16:15199995 (GRCh37)
Canonical SPDI:: NC_000016.10:15106137:C:A,NC_000016.10:15106137:C:T
Gene:: PDXDC1 (Varview), LOC100505915 (Varview), PKD1P6-NPIPP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.00002/1 (GnomAD_exomes)
T=0.00003/2 (GnomAD)
HGVS:: NC_000016.10:g.15106138C>A, NC_000016.10:g.15106138C>T, NC_000016.9:g.15199995C>A, NC_000016.9:g.15199995C>T, NG_032198.4:g.17461G>T, NG_032198.4:g.17461G>A, NT_187607.1:g.563605G>T, NT_187607.1:g.563605G>A, NM_001282511.3:c.619G>T, NM_001282511.3:c.619G>A, NM_001282511.2:c.619G>T, NM_001282511.2:c.619G>A, NM_001282511.1:c.619G>T, NM_001282511.1:c.619G>A, NR_123722.1:n.2573G>T, NR_123722.1:n.2573G>A, NR_123721.1:n.4712G>T, NR_123721.1:n.4712G>A

Select item 14893433777.

rs1489343377 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 16:15135744 (GRCh38)
16:15229601 (GRCh37)
Canonical SPDI:: NC_000016.10:15135743:G:T
Gene:: PDXDC1 (Varview), MIR6511B2 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_downstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.15135744G>T, NC_000016.9:g.15229601G>T, NG_002799.5:g.19230C>A, NT_187607.1:g.526764C>A, NR_123721.1:n.287C>A

Select item 14888484738.

rs1488848473 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 16:15107385 (GRCh38)
16:15201242 (GRCh37)
Canonical SPDI:: NC_000016.10:15107384:C:A,NC_000016.10:15107384:C:T
Gene:: PDXDC1 (Varview), LOC100505915 (Varview), PKD1P6-NPIPP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000016.10:g.15107385C>A, NC_000016.10:g.15107385C>T, NC_000016.9:g.15201242C>A, NC_000016.9:g.15201242C>T, NG_032198.4:g.16214G>T, NG_032198.4:g.16214G>A, NT_187607.1:g.562349G>T, NT_187607.1:g.562349G>A, NM_001282511.3:c.490G>T, NM_001282511.3:c.490G>A, NM_001282511.2:c.490G>T, NM_001282511.2:c.490G>A, NM_001282511.1:c.490G>T, NM_001282511.1:c.490G>A, NR_123722.1:n.2444G>T, NR_123722.1:n.2444G>A, NR_123721.1:n.4583G>T, NR_123721.1:n.4583G>A

Select item 14883936169.

rs1488393616 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:15128079 (GRCh38)
16:15221936 (GRCh37)
Canonical SPDI:: NC_000016.10:15128078:G:A
Gene:: PDXDC1 (Varview), PKD1P6-NPIPP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
HGVS:: NC_000016.10:g.15128079G>A, NC_000016.9:g.15221936G>A, NG_002799.5:g.26895C>T, NT_187607.1:g.537176C>T, NR_123722.1:n.1346C>T, NR_123721.1:n.3485C>T

Select item 148785060610.

rs1487850606 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 16:15136682 (GRCh38)
16:15230539 (GRCh37)
Canonical SPDI:: NC_000016.10:15136681:C:A
Gene:: PDXDC1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.15136682C>A, NC_000016.9:g.15230539C>A, NG_002799.5:g.18292G>T, NT_187607.1:g.525826G>T, NR_123721.1:n.160G>T

Select item 148770941611.

rs1487709416 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:15127486 (GRCh38)
16:15221343 (GRCh37)
Canonical SPDI:: NC_000016.10:15127485:C:T
Gene:: PDXDC1 (Varview), PKD1P6-NPIPP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: T=0.000006/1 (GnomAD_exomes)
HGVS:: NC_000016.10:g.15127486C>T, NC_000016.9:g.15221343C>T, NG_002799.5:g.27488G>A, NT_187607.1:g.537769G>A, NM_001282511.3:c.-343G>A, NR_123722.1:n.1755G>A, NR_123721.1:n.3894G>A

Select item 148746641412.

rs1487466414 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 16:15136614 (GRCh38)
16:15230471 (GRCh37)
Canonical SPDI:: NC_000016.10:15136613:C:A,NC_000016.10:15136613:C:T
Gene:: PDXDC1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000014/2 (GnomAD)
T=0.000319/5 (TOMMO)
HGVS:: NC_000016.10:g.15136614C>A, NC_000016.10:g.15136614C>T, NC_000016.9:g.15230471C>A, NC_000016.9:g.15230471C>T, NG_002799.5:g.18360G>T, NG_002799.5:g.18360G>A, NT_187607.1:g.525894G>T, NT_187607.1:g.525894G>A, NR_123721.1:n.228G>T, NR_123721.1:n.228G>A

Select item 148743375813.

rs1487433758 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:15132736 (GRCh38)
16:15226593 (GRCh37)
Canonical SPDI:: NC_000016.10:15132735:C:T
Gene:: PDXDC1 (Varview), PKD1P6-NPIPP1 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000034/9 (TOPMED)
T=0.000283/5 (TOMMO)
T=0.001371/4 (KOREAN)
HGVS:: NC_000016.10:g.15132736C>T, NC_000016.9:g.15226593C>T, NG_002799.5:g.22238G>A, NT_187607.1:g.529772G>A, NR_123721.1:n.1873G>A

Select item 148730804914.

rs1487308049 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:15104390 (GRCh38)
16:15198247 (GRCh37)
Canonical SPDI:: NC_000016.10:15104389:G:A
Gene:: PDXDC1 (Varview), LOC100505915 (Varview), PKD1P6-NPIPP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.15104390G>A, NC_000016.9:g.15198247G>A, NG_032198.4:g.19209C>T, NT_187607.1:g.565282C>T, NR_123721.1:n.5103C>T

Select item 148728961615.

rs1487289616 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 16:15132917 (GRCh38)
16:15226774 (GRCh37)
Canonical SPDI:: NC_000016.10:15132916:G:A,NC_000016.10:15132916:G:C
Gene:: PDXDC1 (Varview), PKD1P6-NPIPP1 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000016.10:g.15132917G>A, NC_000016.10:g.15132917G>C, NC_000016.9:g.15226774G>A, NC_000016.9:g.15226774G>C, NG_002799.5:g.22057C>T, NG_002799.5:g.22057C>G, NT_187607.1:g.529591C>T, NT_187607.1:g.529591C>G, NR_123721.1:n.1692C>T, NR_123721.1:n.1692C>G

Select item 148692563016.

rs1486925630 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 16:15130313 (GRCh38)
16:15224170 (GRCh37)
Canonical SPDI:: NC_000016.10:15130312:C:G,NC_000016.10:15130312:C:T
Gene:: PDXDC1 (Varview), PKD1P6-NPIPP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.15130313C>G, NC_000016.10:g.15130313C>T, NC_000016.9:g.15224170C>G, NC_000016.9:g.15224170C>T, NG_002799.5:g.24661G>C, NG_002799.5:g.24661G>A, NT_187607.1:g.534942G>C, NT_187607.1:g.534942G>A, NR_123722.1:n.814G>C, NR_123722.1:n.814G>A, NR_123721.1:n.2953G>C, NR_123721.1:n.2953G>A

Select item 148687443417.

rs1486874434 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:15128373 (GRCh38)
16:15222230 (GRCh37)
Canonical SPDI:: NC_000016.10:15128372:C:T
Gene:: PDXDC1 (Varview), PKD1P6-NPIPP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.15128373C>T, NC_000016.9:g.15222230C>T, NG_002799.5:g.26601G>A, NT_187607.1:g.536882G>A, NR_123722.1:n.1138G>A, NR_123721.1:n.3277G>A

Select item 148677595018.

rs1486775950 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 16:15132689 (GRCh38)
16:15226546 (GRCh37)
Canonical SPDI:: NC_000016.10:15132688:C:A,NC_000016.10:15132688:C:T
Gene:: PDXDC1 (Varview), PKD1P6-NPIPP1 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
T=0.000034/9 (TOPMED)
T=0.000035/1 (TOMMO)
T=0.000079/11 (GnomAD)
T=0.000156/1 (1000Genomes)
T=0.000685/2 (KOREAN)
HGVS:: NC_000016.10:g.15132689C>A, NC_000016.10:g.15132689C>T, NC_000016.9:g.15226546C>A, NC_000016.9:g.15226546C>T, NG_002799.5:g.22285G>T, NG_002799.5:g.22285G>A, NT_187607.1:g.529819G>T, NT_187607.1:g.529819G>A

Select item 148670885119.

rs1486708851 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 16:15130060 (GRCh38)
16:15223917 (GRCh37)
Canonical SPDI:: NC_000016.10:15130059:T:A,NC_000016.10:15130059:T:C
Gene:: PDXDC1 (Varview), PKD1P6-NPIPP1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.00007/1 (ALFA)
C=0.00003/2 (GnomAD_exomes)
HGVS:: NC_000016.10:g.15130060T>A, NC_000016.10:g.15130060T>C, NC_000016.9:g.15223917T>A, NC_000016.9:g.15223917T>C, NG_002799.5:g.24914A>T, NG_002799.5:g.24914A>G, NT_187607.1:g.535195A>T, NT_187607.1:g.535195A>G, NR_123722.1:n.943A>T, NR_123722.1:n.943A>G, NR_123721.1:n.3082A>T, NR_123721.1:n.3082A>G

Select item 148658878020.

rs1486588780 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:15132997 (GRCh38)
16:15226854 (GRCh37)
Canonical SPDI:: NC_000016.10:15132996:C:T
Gene:: PDXDC1 (Varview), PKD1P6-NPIPP1 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000026/7 (TOPMED)
HGVS:: NC_000016.10:g.15132997C>T, NC_000016.9:g.15226854C>T, NG_002799.5:g.21977G>A, NT_187607.1:g.529511G>A, NR_123721.1:n.1612G>A

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