SNP Links for Nucleotide (Select 684179373) - SNP

Links from Nucleotide

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Select item 14863902721.

rs1486390272 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:119234111 (GRCh38)
1:119776734 (GRCh37)
Canonical SPDI:: NC_000001.11:119234110:G:A
Gene:: WARS2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.119234111G>A, NC_000001.10:g.119776734G>A, NR_125976.1:n.1418G>A

Select item 14863342492.

rs1486334249 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 1:119140741 (GRCh38)
1:119683364 (GRCh37)
Canonical SPDI:: NC_000001.11:119140740:C:G,NC_000001.11:119140740:C:T
Gene:: WARS2 (Varview), WARS2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
G=0.000546/1 (Korea1K)
HGVS:: NC_000001.11:g.119140741C>G, NC_000001.11:g.119140741C>T, NC_000001.10:g.119683364C>G, NC_000001.10:g.119683364C>T, NG_050658.1:g.5048G>C, NG_050658.1:g.5048G>A, NR_125974.1:n.346C>G, NR_125974.1:n.346C>T, NR_125975.1:n.346C>G, NR_125975.1:n.346C>T, NR_125976.1:n.346C>G, NR_125976.1:n.346C>T, NR_125977.1:n.346C>G, NR_125977.1:n.346C>T

Select item 14774774323.

rs1477477432 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:119140445 (GRCh38)
1:119683068 (GRCh37)
Canonical SPDI:: NC_000001.11:119140444:G:A
Gene:: WARS2 (Varview), WARS2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000001.11:g.119140445G>A, NC_000001.10:g.119683068G>A, NG_050658.1:g.5344C>T, NM_001378227.1:c.-242C>T, NM_001378230.1:c.-370C>T, XM_024449826.2:c.-242C>T, XM_024449826.1:c.-242C>T, XM_024449860.2:c.-370C>T, XM_024449860.1:c.-370C>T, NR_125974.1:n.50G>A, NR_125975.1:n.50G>A, NR_125976.1:n.50G>A, NR_125977.1:n.50G>A

Select item 14774603494.

rs1477460349 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:119150746 (GRCh38)
1:119693369 (GRCh37)
Canonical SPDI:: NC_000001.11:119150745:C:T
Gene:: WARS2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000036/5 (GnomAD)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000001.11:g.119150746C>T, NC_000001.10:g.119693369C>T, NR_125974.1:n.580C>T, NR_125975.1:n.764C>T, NR_125976.1:n.764C>T

Select item 14727160595.

rs1472716059 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:119234087 (GRCh38)
1:119776710 (GRCh37)
Canonical SPDI:: NC_000001.11:119234086:A:G
Gene:: WARS2-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000001.11:g.119234087A>G, NC_000001.10:g.119776710A>G, NR_125976.1:n.1394A>G

Select item 14705382736.

rs1470538273 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 1:119140563 (GRCh38)
1:119683186 (GRCh37)
Canonical SPDI:: NC_000001.11:119140562:C:A,NC_000001.11:119140562:C:T
Gene:: WARS2 (Varview), WARS2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,coding_sequence_variant,5_prime_UTR_variant,missense_variant,non_coding_transcript_variant
Validated:: by frequency,by cluster
MAF:: T=0.00004/1 (TOMMO)
HGVS:: NC_000001.11:g.119140563C>A, NC_000001.11:g.119140563C>T, NC_000001.10:g.119683186C>A, NC_000001.10:g.119683186C>T, NG_050658.1:g.5226G>T, NG_050658.1:g.5226G>A, NM_015836.4:c.82G>T, NM_015836.4:c.82G>A, NM_015836.3:c.82G>T, NM_015836.3:c.82G>A, NM_201263.2:c.82G>T, NM_201263.2:c.82G>A, NM_001378227.1:c.-264G>T, NM_001378227.1:c.-264G>A, NM_001378230.1:c.-392G>T, NM_001378230.1:c.-392G>A, NM_001378226.1:c.-73G>T, NM_001378226.1:c.-73G>A, NM_001378231.1:c.82G>T, NM_001378231.1:c.82G>A, NM_001378228.1:c.82G>T, NM_001378228.1:c.82G>A, NM_001378229.1:c.82G>T, NM_001378229.1:c.82G>A, XM_024449826.2:c.-360G>T, XM_024449826.2:c.-360G>A, XM_024449826.1:c.-360G>T, XM_024449826.1:c.-360G>A, XM_024449860.2:c.-488G>T, XM_024449860.2:c.-488G>A, XM_024449860.1:c.-488G>T, XM_024449860.1:c.-488G>A, XM_017000038.2:c.82G>T, XM_017000038.2:c.82G>A, XM_017000038.1:c.82G>T, XM_017000038.1:c.82G>A, XM_047429105.1:c.82G>T, XM_047429105.1:c.82G>A, NR_125974.1:n.168C>A, NR_125974.1:n.168C>T, NR_125975.1:n.168C>A, NR_125975.1:n.168C>T, NR_125976.1:n.168C>A, NR_125976.1:n.168C>T, NR_125977.1:n.168C>A, NR_125977.1:n.168C>T, NP_056651.1:p.Ala28Ser, NP_056651.1:p.Ala28Thr, NP_957715.1:p.Ala28Ser, NP_957715.1:p.Ala28Thr, NP_001365160.1:p.Ala28Ser, NP_001365160.1:p.Ala28Thr, NP_001365157.1:p.Ala28Ser, NP_001365157.1:p.Ala28Thr, NP_001365158.1:p.Ala28Ser, NP_001365158.1:p.Ala28Thr, XP_016855527.1:p.Ala28Ser, XP_016855527.1:p.Ala28Thr, XP_047285061.1:p.Ala28Ser, XP_047285061.1:p.Ala28Thr

Select item 14685069307.

rs1468506930 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:119140543 (GRCh38)
1:119683166 (GRCh37)
Canonical SPDI:: NC_000001.11:119140542:G:C
Gene:: WARS2 (Varview), WARS2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,5_prime_UTR_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.119140543G>C, NC_000001.10:g.119683166G>C, NG_050658.1:g.5246C>G, XM_024449826.2:c.-340C>G, XM_024449826.1:c.-340C>G, XM_024449860.2:c.-468C>G, XM_024449860.1:c.-468C>G, NR_125974.1:n.148G>C, NR_125975.1:n.148G>C, NR_125976.1:n.148G>C, NR_125977.1:n.148G>C

Select item 14673369868.

rs1467336986 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:119150725 (GRCh38)
1:119693348 (GRCh37)
Canonical SPDI:: NC_000001.11:119150724:A:G
Gene:: WARS2-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.119150725A>G, NC_000001.10:g.119693348A>G, NR_125974.1:n.559A>G, NR_125975.1:n.743A>G, NR_125976.1:n.743A>G

Select item 14616835759.

rs1461683575 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 1:119233819 (GRCh38)
1:119776442 (GRCh37)
Canonical SPDI:: NC_000001.11:119233818:T:
Gene:: WARS2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.119233819del, NC_000001.10:g.119776442del, NR_125976.1:n.1126del

Select item 145902734610.

rs1459027346 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:119141753 (GRCh38)
1:119684376 (GRCh37)
Canonical SPDI:: NC_000001.11:119141752:A:G
Gene:: WARS2 (Varview), WARS2-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.119141753A>G, NC_000001.10:g.119684376A>G, NG_050658.1:g.4036T>C, NR_125975.1:n.405A>G, NR_125976.1:n.405A>G

Select item 145403172811.

rs1454031728 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:119140792 (GRCh38)
1:119683415 (GRCh37)
Canonical SPDI:: NC_000001.11:119140791:A:G
Gene:: WARS2 (Varview), WARS2-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
HGVS:: NC_000001.11:g.119140792A>G, NC_000001.10:g.119683415A>G, NG_050658.1:g.4997T>C, NR_125974.1:n.397A>G, NR_125975.1:n.397A>G, NR_125976.1:n.397A>G, NR_125977.1:n.397A>G

Select item 145251080112.

rs1452510801 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:119233968 (GRCh38)
1:119776591 (GRCh37)
Canonical SPDI:: NC_000001.11:119233967:T:C
Gene:: WARS2-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.119233968T>C, NC_000001.10:g.119776591T>C, NR_125976.1:n.1275T>C

Select item 145095606913.

rs1450956069 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:119140649 (GRCh38)
1:119683272 (GRCh37)
Canonical SPDI:: NC_000001.11:119140648:A:G
Gene:: WARS2 (Varview), WARS2-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,5_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.119140649A>G, NC_000001.10:g.119683272A>G, NG_050658.1:g.5140T>C, NM_015836.4:c.-5T>C, NM_015836.3:c.-5T>C, NM_201263.2:c.-5T>C, NM_001378227.1:c.-350T>C, NM_001378230.1:c.-478T>C, NM_001378226.1:c.-159T>C, NM_001378231.1:c.-5T>C, NM_001378228.1:c.-5T>C, NM_001378229.1:c.-5T>C, XM_024449826.2:c.-446T>C, XM_024449826.1:c.-446T>C, XM_024449860.2:c.-574T>C, XM_024449860.1:c.-574T>C, XM_017000038.2:c.-5T>C, XM_017000038.1:c.-5T>C, XM_047429105.1:c.-5T>C, NR_125974.1:n.254A>G, NR_125975.1:n.254A>G, NR_125976.1:n.254A>G, NR_125977.1:n.254A>G

Select item 145050669614.

rs1450506696 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:119233832 (GRCh38)
1:119776455 (GRCh37)
Canonical SPDI:: NC_000001.11:119233831:G:A
Gene:: WARS2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000001.11:g.119233832G>A, NC_000001.10:g.119776455G>A, NR_125976.1:n.1139G>A

Select item 143583418915.

rs1435834189 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:119233537 (GRCh38)
1:119776160 (GRCh37)
Canonical SPDI:: NC_000001.11:119233536:G:A
Gene:: WARS2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.119233537G>A, NC_000001.10:g.119776160G>A, NR_125976.1:n.844G>A

Select item 143271163016.

rs1432711630 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:119140674 (GRCh38)
1:119683297 (GRCh37)
Canonical SPDI:: NC_000001.11:119140673:A:T
Gene:: WARS2 (Varview), WARS2-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
HGVS:: NC_000001.11:g.119140674A>T, NC_000001.10:g.119683297A>T, NG_050658.1:g.5115T>A, NR_125974.1:n.279A>T, NR_125975.1:n.279A>T, NR_125976.1:n.279A>T, NR_125977.1:n.279A>T

Select item 143262651417.

rs1432626514 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:119140549 (GRCh38)
1:119683172 (GRCh37)
Canonical SPDI:: NC_000001.11:119140548:G:A
Gene:: WARS2 (Varview), WARS2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,5_prime_UTR_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.119140549G>A, NC_000001.10:g.119683172G>A, NG_050658.1:g.5240C>T, XM_024449826.2:c.-346C>T, XM_024449826.1:c.-346C>T, XM_024449860.2:c.-474C>T, XM_024449860.1:c.-474C>T, NR_125974.1:n.154G>A, NR_125975.1:n.154G>A, NR_125976.1:n.154G>A, NR_125977.1:n.154G>A

Select item 142931284018.

rs1429312840 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 1:119140771 (GRCh38)
1:119683394 (GRCh37)
Canonical SPDI:: NC_000001.11:119140770:G:A,NC_000001.11:119140770:G:T
Gene:: WARS2 (Varview), WARS2-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.119140771G>A, NC_000001.11:g.119140771G>T, NC_000001.10:g.119683394G>A, NC_000001.10:g.119683394G>T, NG_050658.1:g.5018C>T, NG_050658.1:g.5018C>A, NR_125974.1:n.376G>A, NR_125974.1:n.376G>T, NR_125975.1:n.376G>A, NR_125975.1:n.376G>T, NR_125976.1:n.376G>A, NR_125976.1:n.376G>T, NR_125977.1:n.376G>A, NR_125977.1:n.376G>T

Select item 142025789719.

rs1420257897 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 1:119233712 (GRCh38)
1:119776335 (GRCh37)
Canonical SPDI:: NC_000001.11:119233711:AAAAA:AAAA
Gene:: WARS2-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: AAAA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.119233716del, NC_000001.10:g.119776339del, NR_125976.1:n.1023del

Select item 141886091820.

rs1418860918 has merged into rs1162729328 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: 1:119233809 (GRCh38)
1:119776432 (GRCh37)
Canonical SPDI:: NC_000001.11:119233808:TTTTTT:TTTTT,NC_000001.11:119233808:TTTTTT:TTTTTTT
Gene:: WARS2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTT=0./0 (ALFA)
HGVS:: NC_000001.11:g.119233814del, NC_000001.11:g.119233814dup, NC_000001.10:g.119776437del, NC_000001.10:g.119776437dup, NR_125976.1:n.1121del, NR_125976.1:n.1121dup

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