SNP Links for Nucleotide (Select 68510025) - SNP

Links from Nucleotide

Items: 1 to 20 of 61

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Select item 14803730001.

rs1480373000 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 3:39408396 (GRCh38)
3:39449887 (GRCh37)
Canonical SPDI:: NC_000003.12:39408395:A:G,NC_000003.12:39408395:A:T
Gene:: RPSA (Varview), SNORA6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000026/7 (TOPMED)
G=0.000029/7 (GnomAD_exomes)
T=0.000684/2 (KOREAN)
HGVS:: NC_000003.12:g.39408396A>G, NC_000003.12:g.39408396A>T, NC_000003.11:g.39449887A>G, NC_000003.11:g.39449887A>T, NG_033234.1:g.6684A>G, NG_033234.1:g.6684A>T, NR_002325.1:n.6A>G, NR_002325.1:n.6A>T

Select item 14729820302.

rs1472982030 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:39408441 (GRCh38)
3:39449932 (GRCh37)
Canonical SPDI:: NC_000003.12:39408440:T:C
Gene:: RPSA (Varview), SNORA6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000074/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000223/1 (Estonian)
HGVS:: NC_000003.12:g.39408441T>C, NC_000003.11:g.39449932T>C, NG_033234.1:g.6729T>C, NR_002325.1:n.51T>C

Select item 14610668293.

rs1461066829 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 3:39408429 (GRCh38)
3:39449920 (GRCh37)
Canonical SPDI:: NC_000003.12:39408428:C:
Gene:: RPSA (Varview), SNORA6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000003.12:g.39408429del, NC_000003.11:g.39449920del, NG_033234.1:g.6717del, NR_002325.1:n.39del

Select item 14546783644.

rs1454678364 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:39408508 (GRCh38)
3:39449999 (GRCh37)
Canonical SPDI:: NC_000003.12:39408507:A:G
Gene:: RPSA (Varview), SNORA6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.39408508A>G, NC_000003.11:g.39449999A>G, NG_033234.1:g.6796A>G, NR_002325.1:n.118A>G

Select item 14532140415.

rs1453214041 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 3:39408446 (GRCh38)
3:39449937 (GRCh37)
Canonical SPDI:: NC_000003.12:39408445:G:T
Gene:: RPSA (Varview), SNORA6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.39408446G>T, NC_000003.11:g.39449937G>T, NG_033234.1:g.6734G>T, NR_002325.1:n.56G>T

Select item 14326637006.

rs1432663700 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 3:39408510 (GRCh38)
3:39450001 (GRCh37)
Canonical SPDI:: NC_000003.12:39408509:T:G
Gene:: RPSA (Varview), SNORA6 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000003.12:g.39408510T>G, NC_000003.11:g.39450001T>G, NG_033234.1:g.6798T>G, NR_002325.1:n.120T>G

Select item 14198315487.

rs1419831548 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 3:39408485 (GRCh38)
3:39449976 (GRCh37)
Canonical SPDI:: NC_000003.12:39408484:C:G
Gene:: RPSA (Varview), SNORA6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.39408485C>G, NC_000003.11:g.39449976C>G, NG_033234.1:g.6773C>G, NR_002325.1:n.95C>G

Select item 14129732958.

rs1412973295 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 3:39408521 (GRCh38)
3:39450012 (GRCh37)
Canonical SPDI:: NC_000003.12:39408520:A:C,NC_000003.12:39408520:A:G
Gene:: RPSA (Varview), SNORA6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
G=0.000035/1 (TOMMO)
HGVS:: NC_000003.12:g.39408521A>C, NC_000003.12:g.39408521A>G, NC_000003.11:g.39450012A>C, NC_000003.11:g.39450012A>G, NG_033234.1:g.6809A>C, NG_033234.1:g.6809A>G, NR_002325.1:n.131A>C, NR_002325.1:n.131A>G

Select item 14068863559.

rs1406886355 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:39408512 (GRCh38)
3:39450003 (GRCh37)
Canonical SPDI:: NC_000003.12:39408511:G:A
Gene:: RPSA (Varview), SNORA6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.39408512G>A, NC_000003.11:g.39450003G>A, NG_033234.1:g.6800G>A, NR_002325.1:n.122G>A

Select item 137902230010.

rs1379022300 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 3:39408533 (GRCh38)
3:39450024 (GRCh37)
Canonical SPDI:: NC_000003.12:39408532:C:G
Gene:: RPSA (Varview), SNORA6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
HGVS:: NC_000003.12:g.39408533C>G, NC_000003.11:g.39450024C>G, NG_033234.1:g.6821C>G, NR_002325.1:n.143C>G

Select item 136153302111.

rs1361533021 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 3:39408526 (GRCh38)
3:39450017 (GRCh37)
Canonical SPDI:: NC_000003.12:39408525:T:A,NC_000003.12:39408525:T:C
Gene:: RPSA (Varview), SNORA6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000003.12:g.39408526T>A, NC_000003.12:g.39408526T>C, NC_000003.11:g.39450017T>A, NC_000003.11:g.39450017T>C, NG_033234.1:g.6814T>A, NG_033234.1:g.6814T>C, NR_002325.1:n.136T>A, NR_002325.1:n.136T>C

Select item 135473365212.

rs1354733652 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:39408426 (GRCh38)
3:39449917 (GRCh37)
Canonical SPDI:: NC_000003.12:39408425:T:C
Gene:: RPSA (Varview), SNORA6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000003.12:g.39408426T>C, NC_000003.11:g.39449917T>C, NG_033234.1:g.6714T>C, NR_002325.1:n.36T>C

Select item 135263296113.

rs1352632961 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 3:39408495 (GRCh38)
3:39449986 (GRCh37)
Canonical SPDI:: NC_000003.12:39408494:G:T
Gene:: RPSA (Varview), SNORA6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.39408495G>T, NC_000003.11:g.39449986G>T, NG_033234.1:g.6783G>T, NR_002325.1:n.105G>T

Select item 133824057014.

rs1338240570 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:39408393 (GRCh38)
3:39449884 (GRCh37)
Canonical SPDI:: NC_000003.12:39408392:C:T
Gene:: RPSA (Varview), SNORA6 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.39408393C>T, NC_000003.11:g.39449884C>T, NG_033234.1:g.6681C>T, NR_002325.1:n.3C>T

Select item 132950491215.

rs1329504912 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 3:39408423 (GRCh38)
3:39449914 (GRCh37)
Canonical SPDI:: NC_000003.12:39408422:T:G
Gene:: RPSA (Varview), SNORA6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000003.12:g.39408423T>G, NC_000003.11:g.39449914T>G, NG_033234.1:g.6711T>G, NR_002325.1:n.33T>G

Select item 127051196816.

rs1270511968 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:39408522 (GRCh38)
3:39450013 (GRCh37)
Canonical SPDI:: NC_000003.12:39408521:G:A
Gene:: RPSA (Varview), SNORA6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0./0 (GnomAD)
A=0.000004/1 (GnomAD_exomes)
A=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.39408522G>A, NC_000003.11:g.39450013G>A, NG_033234.1:g.6810G>A, NR_002325.1:n.132G>A

Select item 126215449517.

rs1262154495 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:39408488 (GRCh38)
3:39449979 (GRCh37)
Canonical SPDI:: NC_000003.12:39408487:C:T
Gene:: RPSA (Varview), SNORA6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.39408488C>T, NC_000003.11:g.39449979C>T, NG_033234.1:g.6776C>T, NR_002325.1:n.98C>T

Select item 122127154518.

rs1221271545 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTGC>- [Show Flanks]
Chromosome:: 3:39408497 (GRCh38)
3:39449988 (GRCh37)
Canonical SPDI:: NC_000003.12:39408494:GCTTGC:GC
Gene:: RPSA (Varview), SNORA6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GC=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000015/4 (TOPMED)
HGVS:: NC_000003.12:g.39408497_39408500del, NC_000003.11:g.39449988_39449991del, NG_033234.1:g.6785_6788del, NR_002325.1:n.107_110del

Select item 118357304719.

rs1183573047 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 3:39408464 (GRCh38)
3:39449955 (GRCh37)
Canonical SPDI:: NC_000003.12:39408463:C:A
Gene:: RPSA (Varview), SNORA6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000003.12:g.39408464C>A, NC_000003.11:g.39449955C>A, NG_033234.1:g.6752C>A, NR_002325.1:n.74C>A

Select item 117682882720.

rs1176828827 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 3:39408402 (GRCh38)
3:39449893 (GRCh37)
Canonical SPDI:: NC_000003.12:39408401:A:C
Gene:: RPSA (Varview), SNORA6 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000003.12:g.39408402A>C, NC_000003.11:g.39449893A>C, NG_033234.1:g.6690A>C, NR_002325.1:n.12A>C

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Links from Nucleotide

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