SNP Links for Nucleotide (Select 685424594) - SNP

Links from Nucleotide

Items: 1 to 20 of 108

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Select item 14819060281.

rs1481906028 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:144311658 (GRCh38)
7:144008751 (GRCh37)
Canonical SPDI:: NC_000007.14:144311657:G:A
Gene:: OR2A1 (Varview), OR2A1-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000007.14:g.144311658G>A, NC_000007.13:g.144008751G>A, NW_018654715.1:g.266259G>A, NR_126023.1:n.540C>T

Select item 14794425122.

rs1479442512 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 7:144355422 (GRCh38)
7:144052515 (GRCh37)
Canonical SPDI:: NC_000007.14:144355421:G:A,NC_000007.14:144355421:G:T
Gene:: ARHGEF5 (Varview), OR2A1-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00484/78 (ALFA)
A=0.014454/1702 (GnomAD)
A=0.03857/247 (1000Genomes)
A=0.114903/202 (Korea1K)
A=0.116115/330 (KOREAN)
A=0.129454/2167 (TOMMO)
G=0.461538/12 (SGDP_PRJ)
HGVS:: NC_000007.14:g.144355422G>A, NC_000007.14:g.144355422G>T, NC_000007.13:g.144052515G>A, NC_000007.13:g.144052515G>T, NW_018654715.1:g.404911G>A, NW_018654715.1:g.404911G>T, NM_005435.4:c.-92G>A, NM_005435.4:c.-92G>T, NM_005435.3:c.-92G>A, NM_005435.3:c.-92G>T, XM_017012623.3:c.-92G>A, XM_017012623.3:c.-92G>T, XM_017012623.2:c.-92G>A, XM_017012623.2:c.-92G>T, XM_017012623.1:c.-92G>A, XM_017012623.1:c.-92G>T, NM_001002861.1:c.-92G>A, NM_001002861.1:c.-92G>T, NR_126023.1:n.297C>T, NR_126023.1:n.297C>A

Select item 14758266643.

rs1475826664 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 7:144239728 (GRCh38)
7:143936821 (GRCh37)
Canonical SPDI:: NC_000007.14:144239727:G:C
Gene:: OR2A42 (Varview), OR2A1-AS1 (Varview), ARHGEF35-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000007.14:g.144239728G>C, NC_000007.13:g.143936821G>C, NW_018654715.1:g.194322G>C, NR_126023.1:n.623C>G

Select item 14742226554.

rs1474222655 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 7:144238671 (GRCh38)
7:143935764 (GRCh37)
Canonical SPDI:: NC_000007.14:144238670:T:A
Gene:: OR2A42 (Varview), OR2A1-AS1 (Varview), ARHGEF35-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.144238671T>A, NC_000007.13:g.143935764T>A, NW_018654715.1:g.193265T>A, NM_001001802.3:c.-244A>T, NR_126023.1:n.848A>T

Select item 14739290165.

rs1473929016 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 7:144238697 (GRCh38)
7:143935790 (GRCh37)
Canonical SPDI:: NC_000007.14:144238696:G:T
Gene:: OR2A42 (Varview), OR2A1-AS1 (Varview), ARHGEF35-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0.000066/1 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.144238697G>T, NC_000007.13:g.143935790G>T, NW_018654715.1:g.193291G>T, NM_001001802.3:c.-270C>A, NR_126023.1:n.822C>A

Select item 14736963766.

rs1473696376 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:144239651 (GRCh38)
7:143936744 (GRCh37)
Canonical SPDI:: NC_000007.14:144239650:C:T
Gene:: OR2A42 (Varview), OR2A1-AS1 (Varview), ARHGEF35-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000007.14:g.144239651C>T, NC_000007.13:g.143936744C>T, NW_018654715.1:g.194245C>T, NR_126023.1:n.700G>A

Select item 14723021637.

rs1472302163 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G,T [Show Flanks]
Chromosome:: 7:144343297 (GRCh38)
7:144040390 (GRCh37)
Canonical SPDI:: NC_000007.14:144343296:A:C,NC_000007.14:144343296:A:G,NC_000007.14:144343296:A:T
Gene:: OR2A1-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by cluster
HGVS:: NC_000007.14:g.144343297A>C, NC_000007.14:g.144343297A>G, NC_000007.14:g.144343297A>T, NC_000007.13:g.144040390A>C, NC_000007.13:g.144040390A>G, NC_000007.13:g.144040390A>T, NW_018654715.1:g.392794A>C, NW_018654715.1:g.392794A>G, NW_018654715.1:g.392794A>T, NR_126023.1:n.383T>G, NR_126023.1:n.383T>C, NR_126023.1:n.383T>A

Select item 14701535808.

rs1470153580 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 7:144238646 (GRCh38)
7:143935739 (GRCh37)
Canonical SPDI:: NC_000007.14:144238645:C:A,NC_000007.14:144238645:C:T
Gene:: OR2A42 (Varview), OR2A1-AS1 (Varview), ARHGEF35-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000007.14:g.144238646C>A, NC_000007.14:g.144238646C>T, NC_000007.13:g.143935739C>A, NC_000007.13:g.143935739C>T, NW_018654715.1:g.193240C>A, NW_018654715.1:g.193240C>T, NM_001001802.3:c.-219G>T, NM_001001802.3:c.-219G>A, NR_126023.1:n.873G>T, NR_126023.1:n.873G>A

Select item 14701365359.

rs1470136535 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:144239740 (GRCh38)
7:143936833 (GRCh37)
Canonical SPDI:: NC_000007.14:144239739:A:G
Gene:: OR2A42 (Varview), OR2A1-AS1 (Varview), ARHGEF35-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0.000084/1 (ALFA)
G=0.000022/3 (GnomAD)
HGVS:: NC_000007.14:g.144239740A>G, NC_000007.13:g.143936833A>G, NW_018654715.1:g.194334A>G, NR_126023.1:n.611T>C

Select item 146925539810.

rs1469255398 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:144238672 (GRCh38)
7:143935765 (GRCh37)
Canonical SPDI:: NC_000007.14:144238671:G:A
Gene:: OR2A42 (Varview), OR2A1-AS1 (Varview), ARHGEF35-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000007.14:g.144238672G>A, NC_000007.13:g.143935765G>A, NW_018654715.1:g.193266G>A, NM_001001802.3:c.-245C>T, NR_126023.1:n.847C>T

Select item 146791063811.

rs1467910638 [Homo sapiens]

Variant type:: SNV:
Alleles:: T>C
Chromosome:: no mapping
Canonical SPDI:

Select item 146511792812.

rs1465117928 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 7:144355339 (GRCh38)
7:144052432 (GRCh37)
Canonical SPDI:: NC_000007.14:144355338:T:A
Gene:: ARHGEF5 (Varview), OR2A1-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.00025/4 (TOMMO)
A=0.00037/1 (KOREAN)
A=0.00114/2 (Korea1K)
HGVS:: NC_000007.14:g.144355339T>A, NC_000007.13:g.144052432T>A, NW_018654715.1:g.404828T>A, NR_126023.1:n.380A>T

Select item 146283651413.

rs1462836514 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 7:144239686 (GRCh38)
7:143936779 (GRCh37)
Canonical SPDI:: NC_000007.14:144239685:C:A
Gene:: OR2A42 (Varview), OR2A1-AS1 (Varview), ARHGEF35-AS1 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/2 (GnomAD)
A=0.000071/1 (TOMMO)
HGVS:: NC_000007.14:g.144239686C>A, NC_000007.13:g.143936779C>A, NW_018654715.1:g.194280C>A, NR_126023.1:n.665G>T

Select item 145925030614.

rs1459250306 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 7:144239594 (GRCh38)
7:143936687 (GRCh37)
Canonical SPDI:: NC_000007.14:144239593:T:A,NC_000007.14:144239593:T:C
Gene:: OR2A42 (Varview), OR2A1-AS1 (Varview), ARHGEF35-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,5_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
A=0.000016/2 (GnomAD)
HGVS:: NC_000007.14:g.144239594T>A, NC_000007.14:g.144239594T>C, NC_000007.13:g.143936687T>A, NC_000007.13:g.143936687T>C, NW_018654715.1:g.194188T>A, NW_018654715.1:g.194188T>C, NM_001001802.3:c.-335A>T, NM_001001802.3:c.-335A>G, NR_126023.1:n.757A>T, NR_126023.1:n.757A>G

Select item 145573888315.

rs1455738883 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:144355420 (GRCh38)
7:144052513 (GRCh37)
Canonical SPDI:: NC_000007.14:144355419:C:T
Gene:: ARHGEF5 (Varview), OR2A1-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.144355420C>T, NC_000007.13:g.144052513C>T, NW_018654715.1:g.404909C>T, NM_005435.4:c.-94C>T, NM_005435.3:c.-94C>T, XM_017012623.3:c.-94C>T, XM_017012623.2:c.-94C>T, XM_017012623.1:c.-94C>T, NM_001002861.1:c.-94C>T, NR_126023.1:n.299G>A

Select item 145366752316.

rs1453667523 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 7:144238705 (GRCh38)
7:143935798 (GRCh37)
Canonical SPDI:: NC_000007.14:144238704:GG:G
Gene:: OR2A42 (Varview), OR2A1-AS1 (Varview), ARHGEF35-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,5_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
HGVS:: NC_000007.14:g.144238706del, NC_000007.13:g.143935799del, NW_018654715.1:g.193300del, NM_001001802.3:c.-278del, NR_126023.1:n.814del

Select item 144964245317.

rs1449642453 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 7:144355446 (GRCh38)
7:144052539 (GRCh37)
Canonical SPDI:: NC_000007.14:144355445:C:A,NC_000007.14:144355445:C:G
Gene:: ARHGEF5 (Varview), OR2A1-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
A=0.00006/1 (TOMMO)
HGVS:: NC_000007.14:g.144355446C>A, NC_000007.14:g.144355446C>G, NC_000007.13:g.144052539C>A, NC_000007.13:g.144052539C>G, NW_018654715.1:g.404935C>A, NW_018654715.1:g.404935C>G, NM_005435.4:c.-68C>A, NM_005435.4:c.-68C>G, NM_005435.3:c.-68C>A, NM_005435.3:c.-68C>G, XM_017012623.3:c.-68C>A, XM_017012623.3:c.-68C>G, XM_017012623.2:c.-68C>A, XM_017012623.2:c.-68C>G, XM_017012623.1:c.-68C>A, XM_017012623.1:c.-68C>G, NM_001002861.1:c.-68C>A, NM_001002861.1:c.-68C>G, NR_126023.1:n.273G>T, NR_126023.1:n.273G>C

Select item 144792428518.

rs1447924285 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 7:144239670 (GRCh38)
7:143936763 (GRCh37)
Canonical SPDI:: NC_000007.14:144239669:C:A
Gene:: OR2A42 (Varview), OR2A1-AS1 (Varview), ARHGEF35-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000007.14:g.144239670C>A, NC_000007.13:g.143936763C>A, NW_018654715.1:g.194264C>A, NR_126023.1:n.681G>T

Select item 144208372219.

rs1442083722 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 7:144239683 (GRCh38)
7:143936776 (GRCh37)
Canonical SPDI:: NC_000007.14:144239682:A:C,NC_000007.14:144239682:A:G
Gene:: OR2A42 (Varview), OR2A1-AS1 (Varview), ARHGEF35-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.144239683A>C, NC_000007.14:g.144239683A>G, NC_000007.13:g.143936776A>C, NC_000007.13:g.143936776A>G, NW_018654715.1:g.194277A>C, NW_018654715.1:g.194277A>G, NR_126023.1:n.668T>G, NR_126023.1:n.668T>C

Select item 141849996820.

rs1418499968 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:144239661 (GRCh38)
7:143936754 (GRCh37)
Canonical SPDI:: NC_000007.14:144239660:G:A
Gene:: OR2A42 (Varview), OR2A1-AS1 (Varview), ARHGEF35-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/1 (GnomAD)
HGVS:: NC_000007.14:g.144239661G>A, NC_000007.13:g.143936754G>A, NW_018654715.1:g.194255G>A, NR_126023.1:n.690C>T

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