SNP Links for Nucleotide (Select 749385097) - SNP

Links from Nucleotide

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Select item 14907760671.

rs1490776067 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:14231168 (GRCh38)
2:14371292 (GRCh37)
Canonical SPDI:: NC_000002.12:14231167:A:G
Gene:: LINC00276 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000002.12:g.14231168A>G, NC_000002.11:g.14371292A>G, NR_103814.2:n.1209T>C, NR_103814.1:n.1209T>C

Select item 14906113792.

rs1490611379 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 2:14231624 (GRCh38)
2:14371748 (GRCh37)
Canonical SPDI:: NC_000002.12:14231623:G:C
Gene:: LINC00276 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000019/5 (TOPMED)
HGVS:: NC_000002.12:g.14231624G>C, NC_000002.11:g.14371748G>C, NR_103814.2:n.753C>G, NR_103814.1:n.753C>G

Select item 14902629493.

rs1490262949 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 2:14231090 (GRCh38)
2:14371214 (GRCh37)
Canonical SPDI:: NC_000002.12:14231089:CCC:CC
Gene:: LINC00276 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.14231092del, NC_000002.11:g.14371216del, NR_103814.2:n.1287del, NR_103814.1:n.1287del

Select item 14902356524.

rs1490235652 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:14230817 (GRCh38)
2:14370941 (GRCh37)
Canonical SPDI:: NC_000002.12:14230816:G:A
Gene:: LINC00276 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
A=0.001592/27 (TOMMO)
A=0.002389/7 (KOREAN)
HGVS:: NC_000002.12:g.14230817G>A, NC_000002.11:g.14370941G>A, NR_103814.2:n.1560C>T, NR_103814.1:n.1560C>T

Select item 14898194365.

rs1489819436 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 2:14231988 (GRCh38)
2:14372112 (GRCh37)
Canonical SPDI:: NC_000002.12:14231987:T:A
Gene:: LINC00276 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000002.12:g.14231988T>A, NC_000002.11:g.14372112T>A, NR_103814.2:n.389A>T, NR_103814.1:n.389A>T

Select item 14895352006.

rs1489535200 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 2:14231379 (GRCh38)
2:14371503 (GRCh37)
Canonical SPDI:: NC_000002.12:14231378:A:C,NC_000002.12:14231378:A:G
Gene:: LINC00276 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.14231379A>C, NC_000002.12:g.14231379A>G, NC_000002.11:g.14371503A>C, NC_000002.11:g.14371503A>G, NR_103814.2:n.998T>G, NR_103814.2:n.998T>C, NR_103814.1:n.998T>G, NR_103814.1:n.998T>C

Select item 14866708557.

rs1486670855 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 2:14231520 (GRCh38)
2:14371644 (GRCh37)
Canonical SPDI:: NC_000002.12:14231519:G:A,NC_000002.12:14231519:G:C,NC_000002.12:14231519:G:T
Gene:: LINC00276 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.14231520G>A, NC_000002.12:g.14231520G>C, NC_000002.12:g.14231520G>T, NC_000002.11:g.14371644G>A, NC_000002.11:g.14371644G>C, NC_000002.11:g.14371644G>T, NR_103814.2:n.857C>T, NR_103814.2:n.857C>G, NR_103814.2:n.857C>A, NR_103814.1:n.857C>T, NR_103814.1:n.857C>G, NR_103814.1:n.857C>A

Select item 14866156238.

rs1486615623 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 2:14230526 (GRCh38)
2:14370650 (GRCh37)
Canonical SPDI:: NC_000002.12:14230525:G:T
Gene:: LINC00276 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000002.12:g.14230526G>T, NC_000002.11:g.14370650G>T, NR_103814.2:n.1851C>A, NR_103814.1:n.1851C>A

Select item 14855924089.

rs1485592408 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:14235914 (GRCh38)
2:14376038 (GRCh37)
Canonical SPDI:: NC_000002.12:14235913:T:C
Gene:: LINC00276 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000142/2 (ALFA)
C=0.000029/4 (GnomAD)
C=0.00006/16 (TOPMED)
HGVS:: NC_000002.12:g.14235914T>C, NC_000002.11:g.14376038T>C, NR_103814.2:n.288A>G, NR_103814.1:n.288A>G

Select item 148281455910.

rs1482814559 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 2:14229388 (GRCh38)
2:14369512 (GRCh37)
Canonical SPDI:: NC_000002.12:14229387:A:G,NC_000002.12:14229387:A:T
Gene:: LINC00276 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.14229388A>G, NC_000002.12:g.14229388A>T, NC_000002.11:g.14369512A>G, NC_000002.11:g.14369512A>T, NR_103814.2:n.2989T>C, NR_103814.2:n.2989T>A, NR_103814.1:n.2989T>C, NR_103814.1:n.2989T>A

Select item 148258446811.

rs1482584468 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:14230759 (GRCh38)
2:14370883 (GRCh37)
Canonical SPDI:: NC_000002.12:14230758:A:G
Gene:: LINC00276 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.14230759A>G, NC_000002.11:g.14370883A>G, NR_103814.2:n.1618T>C, NR_103814.1:n.1618T>C

Select item 148255059212.

rs1482550592 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 2:14229685 (GRCh38)
2:14369810 (GRCh37)
Canonical SPDI:: NC_000002.12:14229685:TTT:TTTT
Gene:: LINC00276 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTT=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.14229688dup, NC_000002.11:g.14369812dup, NR_103814.2:n.2691dup, NR_103814.1:n.2691dup

Select item 148135913613.

rs1481359136 [Homo sapiens]

Variant type:: SNV:
Alleles:: A>G
Chromosome:: no mapping
Canonical SPDI:

Select item 148053842514.

rs1480538425 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:14230733 (GRCh38)
2:14370857 (GRCh37)
Canonical SPDI:: NC_000002.12:14230732:T:C
Gene:: LINC00276 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.14230733T>C, NC_000002.11:g.14370857T>C, NR_103814.2:n.1644A>G, NR_103814.1:n.1644A>G

Select item 147888121315.

rs1478881213 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 2:14230395 (GRCh38)
2:14370519 (GRCh37)
Canonical SPDI:: NC_000002.12:14230394:T:A
Gene:: LINC00276 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.14230395T>A, NC_000002.11:g.14370519T>A, NR_103814.2:n.1982A>T, NR_103814.1:n.1982A>T

Select item 147743103916.

rs1477431039 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:14229978 (GRCh38)
2:14370102 (GRCh37)
Canonical SPDI:: NC_000002.12:14229977:T:C
Gene:: LINC00276 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000038/10 (TOPMED)
C=0.000043/6 (GnomAD)
C=0.000312/2 (1000Genomes)
HGVS:: NC_000002.12:g.14229978T>C, NC_000002.11:g.14370102T>C, NR_103814.2:n.2399A>G, NR_103814.1:n.2399A>G

Select item 147361350817.

rs1473613508 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:14229028 (GRCh38)
2:14369152 (GRCh37)
Canonical SPDI:: NC_000002.12:14229027:C:T
Gene:: LINC00276 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.14229028C>T, NC_000002.11:g.14369152C>T, NR_103814.2:n.3349G>A, NR_103814.1:n.3349G>A

Select item 147250076518.

rs1472500765 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 2:14230668 (GRCh38)
2:14370792 (GRCh37)
Canonical SPDI:: NC_000002.12:14230667:A:C,NC_000002.12:14230667:A:G
Gene:: LINC00276 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.14230668A>C, NC_000002.12:g.14230668A>G, NC_000002.11:g.14370792A>C, NC_000002.11:g.14370792A>G, NR_103814.2:n.1709T>G, NR_103814.2:n.1709T>C, NR_103814.1:n.1709T>G, NR_103814.1:n.1709T>C

Select item 147203637419.

rs1472036374 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTTTA>- [Show Flanks]
Chromosome:: 2:14229811 (GRCh38)
2:14369935 (GRCh37)
Canonical SPDI:: NC_000002.12:14229806:TTTAGTTTA:TTTA
Gene:: LINC00276 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: TTTA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.14229811_14229815del, NC_000002.11:g.14369935_14369939del, NR_103814.2:n.2566_2570del, NR_103814.1:n.2566_2570del

Select item 147171012120.

rs1471710121 has merged into rs140713203 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: 2:14230268 (GRCh38)
2:14370392 (GRCh37)
Canonical SPDI:: NC_000002.12:14230267:TTTTTTTTT:TTTTTTTT,NC_000002.12:14230267:TTTTTTTTT:TTTTTTTTTT
Gene:: LINC00276 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTT=0./0 (ALFA)
T=0.034545/173 (1000Genomes)
-=0.03469/9182 (TOPMED)
HGVS:: NC_000002.12:g.14230276del, NC_000002.12:g.14230276dup, NC_000002.11:g.14370400del, NC_000002.11:g.14370400dup, NR_103814.2:n.2109del, NR_103814.2:n.2109dup, NR_103814.1:n.2109del, NR_103814.1:n.2109dup

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