SNP Links for Nucleotide (Select 952686200) - SNP

Links from Nucleotide

Items: 1 to 20 of 102

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Select item 14878795931.

rs1487879593 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 13:30541681 (GRCh38)
13:31115818 (GRCh37)
Canonical SPDI:: NC_000013.11:30541680:T:C,NC_000013.11:30541680:T:G
Gene:: HMGB1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.30541681T>C, NC_000013.11:g.30541681T>G, NC_000013.10:g.31115818T>C, NC_000013.10:g.31115818T>G, NG_011532.2:g.312A>G, NG_011532.2:g.312A>C

Select item 14800659482.

rs1480065948 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 13:30541469 (GRCh38)
13:31115606 (GRCh37)
Canonical SPDI:: NC_000013.11:30541468:A:C
Gene:: HMGB1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.30541469A>C, NC_000013.10:g.31115606A>C, NG_011532.2:g.524T>G

Select item 14699669593.

rs1469966959 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 13:30541930 (GRCh38)
13:31116067 (GRCh37)
Canonical SPDI:: NC_000013.11:30541929:G:T
Gene:: HMGB1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000013.11:g.30541930G>T, NC_000013.10:g.31116067G>T, NG_011532.2:g.63C>A

Select item 14691465654.

rs1469146565 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:30541593 (GRCh38)
13:31115730 (GRCh37)
Canonical SPDI:: NC_000013.11:30541592:T:C
Gene:: HMGB1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.30541593T>C, NC_000013.10:g.31115730T>C, NG_011532.2:g.400A>G

Select item 14586012485.

rs1458601248 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:30541837 (GRCh38)
13:31115974 (GRCh37)
Canonical SPDI:: NC_000013.11:30541836:C:T
Gene:: HMGB1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.30541837C>T, NC_000013.10:g.31115974C>T, NG_011532.2:g.156G>A

Select item 14458256786.

rs1445825678 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:30541739 (GRCh38)
13:31115876 (GRCh37)
Canonical SPDI:: NC_000013.11:30541738:C:T
Gene:: HMGB1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000162/3 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
T=0.00006/1 (TOMMO)
T=0.00067/3 (Estonian)
HGVS:: NC_000013.11:g.30541739C>T, NC_000013.10:g.31115876C>T, NG_011532.2:g.254G>A

Select item 14427157067.

rs1442715706 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:30541881 (GRCh38)
13:31116018 (GRCh37)
Canonical SPDI:: NC_000013.11:30541880:T:C
Gene:: HMGB1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.30541881T>C, NC_000013.10:g.31116018T>C, NG_011532.2:g.112A>G

Select item 14423885748.

rs1442388574 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:30541904 (GRCh38)
13:31116041 (GRCh37)
Canonical SPDI:: NC_000013.11:30541903:T:C
Gene:: HMGB1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000019/5 (TOPMED)
HGVS:: NC_000013.11:g.30541904T>C, NC_000013.10:g.31116041T>C, NG_011532.2:g.89A>G

Select item 14377254389.

rs1437725438 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:30541818 (GRCh38)
13:31115955 (GRCh37)
Canonical SPDI:: NC_000013.11:30541817:A:G
Gene:: HMGB1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.30541818A>G, NC_000013.10:g.31115955A>G, NG_011532.2:g.175T>C

Select item 143204896810.

rs1432048968 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:30541473 (GRCh38)
13:31115610 (GRCh37)
Canonical SPDI:: NC_000013.11:30541472:T:C
Gene:: HMGB1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000015/2 (GnomAD)
HGVS:: NC_000013.11:g.30541473T>C, NC_000013.10:g.31115610T>C, NG_011532.2:g.520A>G

Select item 142705639011.

rs1427056390 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 13:30541595 (GRCh38)
13:31115733 (GRCh37)
Canonical SPDI:: NC_000013.11:30541595:CCCC:CCCCC
Gene:: HMGB1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCC=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.30541599dup, NC_000013.10:g.31115736dup, NG_011532.2:g.397dup

Select item 142476436812.

rs1424764368 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 13:30541512 (GRCh38)
13:31115649 (GRCh37)
Canonical SPDI:: NC_000013.11:30541511:A:G,NC_000013.11:30541511:A:T
Gene:: HMGB1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000054/1 (ALFA)
T=0.000004/1 (TOPMED)
G=0.000223/1 (Estonian)
HGVS:: NC_000013.11:g.30541512A>G, NC_000013.11:g.30541512A>T, NC_000013.10:g.31115649A>G, NC_000013.10:g.31115649A>T, NG_011532.2:g.481T>C, NG_011532.2:g.481T>A

Select item 141880195113.

rs1418801951 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:30541768 (GRCh38)
13:31115905 (GRCh37)
Canonical SPDI:: NC_000013.11:30541767:A:G
Gene:: HMGB1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.30541768A>G, NC_000013.10:g.31115905A>G, NG_011532.2:g.225T>C

Select item 141045533114.

rs1410455331 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 13:30541764 (GRCh38)
13:31115901 (GRCh37)
Canonical SPDI:: NC_000013.11:30541763:C:G
Gene:: HMGB1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.30541764C>G, NC_000013.10:g.31115901C>G, NG_011532.2:g.229G>C

Select item 140364330115.

rs1403643301 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:30541740 (GRCh38)
13:31115877 (GRCh37)
Canonical SPDI:: NC_000013.11:30541739:G:A
Gene:: HMGB1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
A=0.00463/1 (Vietnamese)
HGVS:: NC_000013.11:g.30541740G>A, NC_000013.10:g.31115877G>A, NG_011532.2:g.253C>T

Select item 140326286816.

rs1403262868 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 13:30541571 (GRCh38)
13:31115708 (GRCh37)
Canonical SPDI:: NC_000013.11:30541570:A:C
Gene:: HMGB1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.30541571A>C, NC_000013.10:g.31115708A>C, NG_011532.2:g.422T>G

Select item 140064373517.

rs1400643735 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:30541547 (GRCh38)
13:31115684 (GRCh37)
Canonical SPDI:: NC_000013.11:30541546:G:C
Gene:: HMGB1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.30541547G>C, NC_000013.10:g.31115684G>C, NG_011532.2:g.446C>G

Select item 139811280618.

rs1398112806 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:30541869 (GRCh38)
13:31116006 (GRCh37)
Canonical SPDI:: NC_000013.11:30541868:C:T
Gene:: HMGB1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.30541869C>T, NC_000013.10:g.31116006C>T, NG_011532.2:g.124G>A

Select item 138736814719.

rs1387368147 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:30541599 (GRCh38)
13:31115736 (GRCh37)
Canonical SPDI:: NC_000013.11:30541598:C:T
Gene:: HMGB1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.30541599C>T, NC_000013.10:g.31115736C>T, NG_011532.2:g.394G>A

Select item 138542405220.

rs1385424052 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:30541780 (GRCh38)
13:31115917 (GRCh37)
Canonical SPDI:: NC_000013.11:30541779:G:A
Gene:: HMGB1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000013.11:g.30541780G>A, NC_000013.10:g.31115917G>A, NG_011532.2:g.213C>T

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Links from Nucleotide

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