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Links from Nucleotide

Items: 1 to 20 of 138

1.

rs1487052686 [Homo sapiens]
    Variant type:
    SNV
    Alleles:
    A>C [Show Flanks]
    Chromosome:
    2:70293154 (GRCh38)
    2:70520286 (GRCh37)
    Canonical SPDI:
    NC_000002.12:70293153:A:C
    Gene:
    SNRPG (Varview), LOC124906023 (Varview)
    Functional Consequence:
    intron_variant,coding_sequence_variant,5_prime_UTR_variant,upstream_transcript_variant,2KB_upstream_variant,missense_variant
    Validated:
    by frequency,by alfa,by cluster
    MAF:
    C=0.000071/1 (ALFA)
    C=0.000004/1 (TOPMED)
    C=0.000007/1 (GnomAD)
    HGVS:
    2.

    rs1484789979 [Homo sapiens]
      Variant type:
      SNV
      Alleles:
      T>C [Show Flanks]
      Chromosome:
      2:70288164 (GRCh38)
      2:70515296 (GRCh37)
      Canonical SPDI:
      NC_000002.12:70288163:T:C
      Gene:
      SNRPG (Varview)
      Functional Consequence:
      synonymous_variant,coding_sequence_variant
      Validated:
      by frequency,by alfa
      MAF:
      C=0.000047/1 (ALFA)
      C=0.000004/1 (GnomAD_exomes)
      HGVS:
      4.

      rs1471781109 [Homo sapiens]
        Variant type:
        DELINS
        Alleles:
        ->GTC [Show Flanks]
        Chromosome:
        2:70281537 (GRCh38)
        2:70508670 (GRCh37)
        Canonical SPDI:
        NC_000002.12:70281537:GTC:GTCGTC
        Gene:
        SNRPG (Varview), PCYOX1 (Varview)
        Functional Consequence:
        downstream_transcript_variant,genic_downstream_transcript_variant,3_prime_UTR_variant,500B_downstream_variant
        Validated:
        by frequency,by alfa,by cluster
        MAF:
        GTCGTC=0./0 (ALFA)
        GTC=0.000007/1 (GnomAD)
        GTC=0.000008/2 (TOPMED)
        HGVS:
        5.

        rs1471721376 [Homo sapiens]
          Variant type:
          SNV
          Alleles:
          C>T [Show Flanks]
          Chromosome:
          2:70281677 (GRCh38)
          2:70508809 (GRCh37)
          Canonical SPDI:
          NC_000002.12:70281676:C:T
          Gene:
          SNRPG (Varview), PCYOX1 (Varview)
          Functional Consequence:
          missense_variant,3_prime_UTR_variant,genic_downstream_transcript_variant,coding_sequence_variant,downstream_transcript_variant,500B_downstream_variant
          HGVS:
          6.

          rs1457955347 [Homo sapiens]
            Variant type:
            SNV
            Alleles:
            T>C,G [Show Flanks]
            Chromosome:
            2:70288100 (GRCh38)
            2:70515232 (GRCh37)
            Canonical SPDI:
            NC_000002.12:70288099:T:C,NC_000002.12:70288099:T:G
            Gene:
            SNRPG (Varview)
            Functional Consequence:
            coding_sequence_variant,missense_variant
            Validated:
            by frequency,by alfa,by cluster
            MAF:
            G=0./0 (ALFA)
            C=0.000007/1 (GnomAD)
            HGVS:
            NC_000002.12:g.70288100T>C, NC_000002.12:g.70288100T>G, NC_000002.11:g.70515232T>C, NC_000002.11:g.70515232T>G, NM_003096.4:c.148A>G, NM_003096.4:c.148A>C, NM_003096.3:c.148A>G, NM_003096.3:c.148A>C, NM_003096.2:c.148A>G, NM_003096.2:c.148A>C, NM_001317165.2:c.148A>G, NM_001317165.2:c.148A>C, NM_001317165.1:c.148A>G, NM_001317165.1:c.148A>C, NM_001317169.2:c.112A>G, NM_001317169.2:c.112A>C, NM_001317169.1:c.112A>G, NM_001317169.1:c.112A>C, NM_001317166.2:c.148A>G, NM_001317166.2:c.148A>C, NM_001317166.1:c.148A>G, NM_001317166.1:c.148A>C, NM_001317171.2:c.94A>G, NM_001317171.2:c.94A>C, NM_001317171.1:c.94A>G, NM_001317171.1:c.94A>C, XM_017004774.2:c.148A>G, XM_017004774.2:c.148A>C, XM_017004774.1:c.148A>G, XM_017004774.1:c.148A>C, NM_001317168.1:c.112A>G, NM_001317168.1:c.112A>C, NM_001317167.1:c.124A>G, NM_001317167.1:c.124A>C, NP_003087.1:p.Thr50Ala, NP_003087.1:p.Thr50Pro, NP_001304094.1:p.Thr50Ala, NP_001304094.1:p.Thr50Pro, NP_001304098.1:p.Thr38Ala, NP_001304098.1:p.Thr38Pro, NP_001304095.1:p.Thr50Ala, NP_001304095.1:p.Thr50Pro, NP_001304100.1:p.Thr32Ala, NP_001304100.1:p.Thr32Pro, XP_016860263.1:p.Thr50Ala, XP_016860263.1:p.Thr50Pro, NP_001304097.1:p.Thr38Ala, NP_001304097.1:p.Thr38Pro, NP_001304096.1:p.Thr42Ala, NP_001304096.1:p.Thr42Pro
            7.

            rs1457375452 [Homo sapiens]
              Variant type:
              SNV
              Alleles:
              A>C [Show Flanks]
              Chromosome:
              2:70281452 (GRCh38)
              2:70508584 (GRCh37)
              Canonical SPDI:
              NC_000002.12:70281451:A:C
              Gene:
              SNRPG (Varview), PCYOX1 (Varview)
              Functional Consequence:
              genic_downstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,3_prime_UTR_variant
              Validated:
              by frequency,by alfa
              MAF:
              C=0./0 (ALFA)
              C=0.000008/2 (TOPMED)
              HGVS:
              8.

              rs1456002498 [Homo sapiens]
                Variant type:
                SNV
                Alleles:
                C>T [Show Flanks]
                Chromosome:
                2:70281368 (GRCh38)
                2:70508500 (GRCh37)
                Canonical SPDI:
                NC_000002.12:70281367:C:T
                Gene:
                SNRPG (Varview), PCYOX1 (Varview)
                Functional Consequence:
                genic_downstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant,3_prime_UTR_variant
                Validated:
                by frequency,by alfa,by cluster
                MAF:
                T=0./0 (ALFA)
                T=0.000004/1 (TOPMED)
                T=0.000014/2 (GnomAD)
                HGVS:
                10.

                rs1445538636 [Homo sapiens]
                  Variant type:
                  DELINS
                  Alleles:
                  ->AAAT [Show Flanks]
                  Chromosome:
                  2:70281438 (GRCh38)
                  2:70508571 (GRCh37)
                  Canonical SPDI:
                  NC_000002.12:70281438:AAAT:AAATAAAT
                  Gene:
                  SNRPG (Varview), PCYOX1 (Varview)
                  Functional Consequence:
                  500B_downstream_variant,downstream_transcript_variant,genic_downstream_transcript_variant,3_prime_UTR_variant
                  Validated:
                  by frequency,by alfa,by cluster
                  MAF:
                  AAATAAAT=0./0 (ALFA)
                  AAAT=0.000004/1 (TOPMED)
                  AAAT=0.000007/1 (GnomAD)
                  HGVS:
                  11.

                  rs1445420089 [Homo sapiens]
                    Variant type:
                    SNV
                    Alleles:
                    A>G [Show Flanks]
                    Chromosome:
                    2:70281426 (GRCh38)
                    2:70508558 (GRCh37)
                    Canonical SPDI:
                    NC_000002.12:70281425:A:G
                    Gene:
                    SNRPG (Varview), PCYOX1 (Varview)
                    Functional Consequence:
                    500B_downstream_variant,downstream_transcript_variant,genic_downstream_transcript_variant,3_prime_UTR_variant
                    Validated:
                    by frequency,by alfa,by cluster
                    MAF:
                    G=0./0 (ALFA)
                    G=0.000004/1 (TOPMED)
                    G=0.000007/1 (GnomAD)
                    HGVS:
                    12.

                    rs1445044997 [Homo sapiens]
                      Variant type:
                      SNV
                      Alleles:
                      T>G [Show Flanks]
                      Chromosome:
                      2:70281525 (GRCh38)
                      2:70508657 (GRCh37)
                      Canonical SPDI:
                      NC_000002.12:70281524:T:G
                      Gene:
                      SNRPG (Varview), PCYOX1 (Varview)
                      Functional Consequence:
                      500B_downstream_variant,downstream_transcript_variant,genic_downstream_transcript_variant,3_prime_UTR_variant
                      Validated:
                      by frequency,by alfa
                      MAF:
                      G=0./0 (ALFA)
                      G=0.000004/1 (TOPMED)
                      HGVS:
                      13.

                      rs1440884493 [Homo sapiens]
                        Variant type:
                        SNV
                        Alleles:
                        A>C [Show Flanks]
                        Chromosome:
                        2:70293215 (GRCh38)
                        2:70520347 (GRCh37)
                        Canonical SPDI:
                        NC_000002.12:70293214:A:C
                        Gene:
                        SNRPG (Varview), LOC124906023 (Varview)
                        Functional Consequence:
                        intron_variant,2KB_upstream_variant,5_prime_UTR_variant,upstream_transcript_variant
                        Validated:
                        by frequency,by alfa,by cluster
                        MAF:
                        C=0./0 (ALFA)
                        C=0.000026/7 (TOPMED)
                        C=0.000029/4 (GnomAD)
                        C=0.005459/10 (Korea1K)
                        HGVS:
                        14.

                        rs1437292976 [Homo sapiens]
                          Variant type:
                          SNV
                          Alleles:
                          T>G [Show Flanks]
                          Chromosome:
                          2:70293165 (GRCh38)
                          2:70520297 (GRCh37)
                          Canonical SPDI:
                          NC_000002.12:70293164:T:G
                          Gene:
                          SNRPG (Varview), LOC124906023 (Varview)
                          Functional Consequence:
                          intron_variant,2KB_upstream_variant,5_prime_UTR_variant,upstream_transcript_variant
                          Validated:
                          by frequency,by alfa,by cluster
                          MAF:
                          G=0./0 (ALFA)
                          G=0.000004/1 (TOPMED)
                          G=0.000007/1 (GnomAD)
                          HGVS:
                          15.

                          rs1411877720 [Homo sapiens]
                            Variant type:
                            DELINS
                            Alleles:
                            TTTA>- [Show Flanks]
                            Chromosome:
                            2:70281527 (GRCh38)
                            2:70508659 (GRCh37)
                            Canonical SPDI:
                            NC_000002.12:70281522:TTTATTTA:TTTA
                            Gene:
                            SNRPG (Varview), PCYOX1 (Varview)
                            Functional Consequence:
                            3_prime_UTR_variant,genic_downstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant
                            Validated:
                            by frequency,by alfa,by cluster
                            MAF:
                            TTTATTTA=0./0 (ALFA)
                            -=0.000015/4 (TOPMED)
                            -=0.000035/1 (TOMMO)
                            -=0.000128/18 (GnomAD)
                            HGVS:
                            16.

                            rs1408854010 [Homo sapiens]
                              Variant type:
                              SNV
                              Alleles:
                              T>G [Show Flanks]
                              Chromosome:
                              2:70281567 (GRCh38)
                              2:70508699 (GRCh37)
                              Canonical SPDI:
                              NC_000002.12:70281566:T:G
                              Gene:
                              SNRPG (Varview), PCYOX1 (Varview)
                              Functional Consequence:
                              3_prime_UTR_variant,genic_downstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant
                              Validated:
                              by frequency,by alfa,by cluster
                              MAF:
                              G=0./0 (ALFA)
                              G=0.000014/2 (GnomAD)
                              G=0.000015/4 (TOPMED)
                              HGVS:
                              17.

                              rs1387153487 [Homo sapiens]
                                Variant type:
                                SNV
                                Alleles:
                                T>G [Show Flanks]
                                Chromosome:
                                2:70281448 (GRCh38)
                                2:70508580 (GRCh37)
                                Canonical SPDI:
                                NC_000002.12:70281447:T:G
                                Gene:
                                SNRPG (Varview), PCYOX1 (Varview)
                                Functional Consequence:
                                3_prime_UTR_variant,genic_downstream_transcript_variant,500B_downstream_variant,downstream_transcript_variant
                                Validated:
                                by frequency,by alfa
                                MAF:
                                G=0./0 (ALFA)
                                G=0.000008/2 (TOPMED)
                                HGVS:
                                18.

                                rs1386396290 [Homo sapiens]
                                  Variant type:
                                  DEL
                                  Alleles:
                                  C>- [Show Flanks]
                                  Chromosome:
                                  2:70293158 (GRCh38)
                                  2:70520290 (GRCh37)
                                  Canonical SPDI:
                                  NC_000002.12:70293157:C:
                                  Gene:
                                  SNRPG (Varview), LOC124906023 (Varview)
                                  Functional Consequence:
                                  intron_variant,initiator_codon_variant,2KB_upstream_variant,frameshift_variant,upstream_transcript_variant,5_prime_UTR_variant
                                  Validated:
                                  by frequency
                                  MAF:
                                  -=0.000008/1 (GnomAD_exomes)
                                  HGVS:
                                  19.

                                  rs1383433191 [Homo sapiens]
                                    Variant type:
                                    SNV
                                    Alleles:
                                    G>A,T [Show Flanks]
                                    Chromosome:
                                    2:70293194 (GRCh38)
                                    2:70520326 (GRCh37)
                                    Canonical SPDI:
                                    NC_000002.12:70293193:G:A,NC_000002.12:70293193:G:T
                                    Gene:
                                    SNRPG (Varview), LOC124906023 (Varview)
                                    Functional Consequence:
                                    upstream_transcript_variant,intron_variant,5_prime_UTR_variant,2KB_upstream_variant
                                    Validated:
                                    by frequency,by alfa,by cluster
                                    MAF:
                                    A=0./0 (ALFA)
                                    A=0.000004/1 (TOPMED)
                                    A=0.000007/1 (GnomAD)
                                    T=0.000008/1 (GnomAD_exomes)
                                    HGVS:
                                    20.

                                    rs1382105736 [Homo sapiens]
                                      Variant type:
                                      SNV
                                      Alleles:
                                      T>C,G [Show Flanks]
                                      Chromosome:
                                      2:70288120 (GRCh38)
                                      2:70515252 (GRCh37)
                                      Canonical SPDI:
                                      NC_000002.12:70288119:T:C,NC_000002.12:70288119:T:G
                                      Gene:
                                      SNRPG (Varview)
                                      Functional Consequence:
                                      coding_sequence_variant,missense_variant
                                      Validated:
                                      by frequency,by alfa,by cluster
                                      MAF:
                                      G=0./0 (ALFA)
                                      G=0.000007/1 (GnomAD)
                                      HGVS:
                                      NC_000002.12:g.70288120T>C, NC_000002.12:g.70288120T>G, NC_000002.11:g.70515252T>C, NC_000002.11:g.70515252T>G, NM_003096.4:c.128A>G, NM_003096.4:c.128A>C, NM_003096.3:c.128A>G, NM_003096.3:c.128A>C, NM_003096.2:c.128A>G, NM_003096.2:c.128A>C, NM_001317165.2:c.128A>G, NM_001317165.2:c.128A>C, NM_001317165.1:c.128A>G, NM_001317165.1:c.128A>C, NM_001317169.2:c.92A>G, NM_001317169.2:c.92A>C, NM_001317169.1:c.92A>G, NM_001317169.1:c.92A>C, NM_001317166.2:c.128A>G, NM_001317166.2:c.128A>C, NM_001317166.1:c.128A>G, NM_001317166.1:c.128A>C, NM_001317171.2:c.74A>G, NM_001317171.2:c.74A>C, NM_001317171.1:c.74A>G, NM_001317171.1:c.74A>C, XM_017004774.2:c.128A>G, XM_017004774.2:c.128A>C, XM_017004774.1:c.128A>G, XM_017004774.1:c.128A>C, NM_001317168.1:c.92A>G, NM_001317168.1:c.92A>C, NM_001317167.1:c.104A>G, NM_001317167.1:c.104A>C, NP_003087.1:p.Asp43Gly, NP_003087.1:p.Asp43Ala, NP_001304094.1:p.Asp43Gly, NP_001304094.1:p.Asp43Ala, NP_001304098.1:p.Asp31Gly, NP_001304098.1:p.Asp31Ala, NP_001304095.1:p.Asp43Gly, NP_001304095.1:p.Asp43Ala, NP_001304100.1:p.Asp25Gly, NP_001304100.1:p.Asp25Ala, XP_016860263.1:p.Asp43Gly, XP_016860263.1:p.Asp43Ala, NP_001304097.1:p.Asp31Gly, NP_001304097.1:p.Asp31Ala, NP_001304096.1:p.Asp35Gly, NP_001304096.1:p.Asp35Ala

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