SNP Links for Nucleotide (Select 974005180) - SNP

Links from Nucleotide

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Select item 14884739991.

rs1488473999 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:5136770 (GRCh38)
6:5137004 (GRCh37)
Canonical SPDI:: NC_000006.12:5136769:C:T
Gene:: LYRM4 (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,3_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.5136770C>T, NC_000006.11:g.5137004C>T, NG_051651.1:g.129181G>A, NM_001318782.1:c.*123G>A

Select item 14871026992.

rs1487102699 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:5260942 (GRCh38)
6:5261175 (GRCh37)
Canonical SPDI:: NC_000006.12:5260941:G:A
Gene:: FARS2 (Varview), LYRM4 (Varview)
Functional Consequence:: upstream_transcript_variant,5_prime_UTR_variant,non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.5260942G>A, NC_000006.11:g.5261175G>A, NG_033003.2:g.4592G>A, NG_051651.1:g.5009C>T, NM_020408.6:c.-209C>T, NM_020408.5:c.-209C>T, NM_001164841.3:c.-209C>T, NM_001164841.2:c.-209C>T, NM_001164840.3:c.-209C>T, NM_001164840.2:c.-209C>T, NR_104417.2:n.9C>T, NR_104417.1:n.9C>T, NR_104418.1:n.9C>T, NM_001318782.1:c.-209C>T, NR_134856.1:n.9C>T, NM_001318783.1:c.-209C>T, XM_017011084.3:c.-209C>T, XM_017011084.1:c.-209C>T, XM_017011083.3:c.-209C>T, XM_017011083.1:c.-209C>T

Select item 14780935313.

rs1478093531 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:5136692 (GRCh38)
6:5136926 (GRCh37)
Canonical SPDI:: NC_000006.12:5136691:T:C
Gene:: LYRM4 (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.5136692T>C, NC_000006.11:g.5136926T>C, NG_051651.1:g.129259A>G, NM_001318782.1:c.*201A>G

Select item 14760267844.

rs1476026784 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:5138735 (GRCh38)
6:5138969 (GRCh37)
Canonical SPDI:: NC_000006.12:5138734:T:C
Gene:: LYRM4 (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: synonymous_variant,terminator_codon_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000019/5 (TOPMED)
C=0.000023/3 (GnomAD_exomes)
HGVS:: NC_000006.12:g.5138735T>C, NC_000006.11:g.5138969T>C, NG_051651.1:g.127216A>G, NM_001318782.1:c.212A>G

Select item 14748708555.

rs1474870855 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:5136745 (GRCh38)
6:5136979 (GRCh37)
Canonical SPDI:: NC_000006.12:5136744:T:C
Gene:: LYRM4 (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.5136745T>C, NC_000006.11:g.5136979T>C, NG_051651.1:g.129206A>G, NM_001318782.1:c.*148A>G

Select item 14686337806.

rs1468633780 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:5136417 (GRCh38)
6:5136651 (GRCh37)
Canonical SPDI:: NC_000006.12:5136416:G:A
Gene:: LYRM4 (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.5136417G>A, NC_000006.11:g.5136651G>A, NG_051651.1:g.129534C>T, NM_001318782.1:c.*476C>T

Select item 14668580637.

rs1466858063 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:5260716 (GRCh38)
6:5260949 (GRCh37)
Canonical SPDI:: NC_000006.12:5260715:G:A
Gene:: FARS2 (Varview), LYRM4 (Varview)
Functional Consequence:: coding_sequence_variant,upstream_transcript_variant,non_coding_transcript_variant,genic_upstream_transcript_variant,synonymous_variant,intron_variant
Validated:: by frequency,by cluster
MAF:: A=0.000006/1 (GnomAD_exomes)
A=0.000035/1 (TOMMO)
HGVS:: NC_000006.12:g.5260716G>A, NC_000006.11:g.5260949G>A, NG_033003.2:g.4366G>A, NG_051651.1:g.5235C>T, NM_020408.6:c.18C>T, NM_020408.5:c.18C>T, NM_020408.4:c.18C>T, NM_001164841.3:c.18C>T, NM_001164841.2:c.18C>T, NM_001164841.1:c.18C>T, NM_001164840.3:c.18C>T, NM_001164840.2:c.18C>T, NM_001164840.1:c.18C>T, NR_104417.2:n.235C>T, NR_104417.1:n.235C>T, NR_104418.1:n.235C>T, NM_001318782.1:c.18C>T, NR_134856.1:n.235C>T, NM_001318783.1:c.18C>T, XM_017011084.3:c.18C>T, XM_017011084.2:c.18C>T, XM_017011084.1:c.18C>T, XM_017011083.3:c.18C>T, XM_017011083.2:c.18C>T, XM_017011083.1:c.18C>T

Select item 14598497368.

rs1459849736 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 6:5136305 (GRCh38)
6:5136539 (GRCh37)
Canonical SPDI:: NC_000006.12:5136304:A:T
Gene:: LYRM4 (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.5136305A>T, NC_000006.11:g.5136539A>T, NG_051651.1:g.129646T>A, NM_001318782.1:c.*588T>A

Select item 14596894769.

rs1459689476 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:5136442 (GRCh38)
6:5136676 (GRCh37)
Canonical SPDI:: NC_000006.12:5136441:T:C
Gene:: LYRM4 (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000019/5 (TOPMED)
C=0.000156/1 (1000Genomes)
C=0.00046/8 (TOMMO)
C=0.003765/11 (KOREAN)
T=0.5/1 (SGDP_PRJ)
HGVS:: NC_000006.12:g.5136442T>C, NC_000006.11:g.5136676T>C, NG_051651.1:g.129509A>G, NM_001318782.1:c.*451A>G

Select item 145916175710.

rs1459161757 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 6:5260770 (GRCh38)
6:5261003 (GRCh37)
Canonical SPDI:: NC_000006.12:5260769:C:G,NC_000006.12:5260769:C:T
Gene:: FARS2 (Varview), LYRM4 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0./0 (GnomAD)
G=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.5260770C>G, NC_000006.12:g.5260770C>T, NC_000006.11:g.5261003C>G, NC_000006.11:g.5261003C>T, NG_033003.2:g.4420C>G, NG_033003.2:g.4420C>T, NG_051651.1:g.5181G>C, NG_051651.1:g.5181G>A, NM_020408.6:c.-37G>C, NM_020408.6:c.-37G>A, NM_020408.5:c.-37G>C, NM_020408.5:c.-37G>A, NM_020408.4:c.-37G>C, NM_020408.4:c.-37G>A, NM_001164841.3:c.-37G>C, NM_001164841.3:c.-37G>A, NM_001164841.2:c.-37G>C, NM_001164841.2:c.-37G>A, NM_001164841.1:c.-37G>C, NM_001164841.1:c.-37G>A, NM_001164840.3:c.-37G>C, NM_001164840.3:c.-37G>A, NM_001164840.2:c.-37G>C, NM_001164840.2:c.-37G>A, NM_001164840.1:c.-37G>C, NM_001164840.1:c.-37G>A, NR_104417.2:n.181G>C, NR_104417.2:n.181G>A, NR_104417.1:n.181G>C, NR_104417.1:n.181G>A, NR_104418.1:n.181G>C, NR_104418.1:n.181G>A, NM_001318782.1:c.-37G>C, NM_001318782.1:c.-37G>A, NR_134856.1:n.181G>C, NR_134856.1:n.181G>A, NM_001318783.1:c.-37G>C, NM_001318783.1:c.-37G>A, XM_017011084.3:c.-37G>C, XM_017011084.3:c.-37G>A, XM_017011084.1:c.-37G>C, XM_017011084.1:c.-37G>A, XM_017011083.3:c.-37G>C, XM_017011083.3:c.-37G>A, XM_017011083.1:c.-37G>C, XM_017011083.1:c.-37G>A

Select item 145878767611.

rs1458787676 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:5136556 (GRCh38)
6:5136790 (GRCh37)
Canonical SPDI:: NC_000006.12:5136555:T:C
Gene:: LYRM4 (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.5136556T>C, NC_000006.11:g.5136790T>C, NG_051651.1:g.129395A>G, NM_001318782.1:c.*337A>G

Select item 145408804012.

rs1454088040 [Homo sapiens]

Variant type:: DELINS
Alleles:: TAAA>- [Show Flanks]
Chromosome:: 6:5260752 (GRCh38)
6:5260985 (GRCh37)
Canonical SPDI:: NC_000006.12:5260748:AAATAAA:AAA
Gene:: FARS2 (Varview), LYRM4 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,intron_variant,5_prime_UTR_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAA=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.5260752_5260755del, NC_000006.11:g.5260985_5260988del, NG_033003.2:g.4402_4405del, NG_051651.1:g.5199_5202del, NM_020408.6:c.-19_-16del, NM_020408.5:c.-19_-16del, NM_020408.4:c.-19_-16del, NM_001164841.3:c.-19_-16del, NM_001164841.2:c.-19_-16del, NM_001164841.1:c.-19_-16del, NM_001164840.3:c.-19_-16del, NM_001164840.2:c.-19_-16del, NM_001164840.1:c.-19_-16del, NR_104417.2:n.199_202del, NR_104417.1:n.199_202del, NR_104418.1:n.199_202del, NM_001318782.1:c.-19_-16del, NR_134856.1:n.199_202del, NM_001318783.1:c.-19_-16del, XM_017011084.3:c.-19_-16del, XM_017011084.1:c.-19_-16del, XM_017011083.3:c.-19_-16del, XM_017011083.1:c.-19_-16del

Select item 145193866813.

rs1451938668 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 6:5136504 (GRCh38)
6:5136739 (GRCh37)
Canonical SPDI:: NC_000006.12:5136504:T:TT
Gene:: LYRM4 (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.5136505dup, NC_000006.11:g.5136739dup, NG_051651.1:g.129446dup, NM_001318782.1:c.*388dup

Select item 144893730714.

rs1448937307 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 6:5136393 (GRCh38)
6:5136627 (GRCh37)
Canonical SPDI:: NC_000006.12:5136392:C:G,NC_000006.12:5136392:C:T
Gene:: LYRM4 (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.5136393C>G, NC_000006.12:g.5136393C>T, NC_000006.11:g.5136627C>G, NC_000006.11:g.5136627C>T, NG_051651.1:g.129558G>C, NG_051651.1:g.129558G>A, NM_001318782.1:c.*500G>C, NM_001318782.1:c.*500G>A

Select item 144610935115.

rs1446109351 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:5136575 (GRCh38)
6:5136809 (GRCh37)
Canonical SPDI:: NC_000006.12:5136574:C:T
Gene:: LYRM4 (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000006.12:g.5136575C>T, NC_000006.11:g.5136809C>T, NG_051651.1:g.129376G>A, NM_001318782.1:c.*318G>A

Select item 144213656116.

rs1442136561 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 6:5136434 (GRCh38)
6:5136668 (GRCh37)
Canonical SPDI:: NC_000006.12:5136433:A:C
Gene:: LYRM4 (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000006.12:g.5136434A>C, NC_000006.11:g.5136668A>C, NG_051651.1:g.129517T>G, NM_001318782.1:c.*459T>G

Select item 144137654617.

rs1441376546 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:5260830 (GRCh38)
6:5261063 (GRCh37)
Canonical SPDI:: NC_000006.12:5260829:A:G
Gene:: FARS2 (Varview), LYRM4 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant,upstream_transcript_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.5260830A>G, NC_000006.11:g.5261063A>G, NG_033003.2:g.4480A>G, NG_051651.1:g.5121T>C, NM_020408.6:c.-97T>C, NM_020408.5:c.-97T>C, NM_020408.4:c.-97T>C, NM_001164841.3:c.-97T>C, NM_001164841.2:c.-97T>C, NM_001164841.1:c.-97T>C, NM_001164840.3:c.-97T>C, NM_001164840.2:c.-97T>C, NM_001164840.1:c.-97T>C, NR_104417.2:n.121T>C, NR_104417.1:n.121T>C, NR_104418.1:n.121T>C, NM_001318782.1:c.-97T>C, NR_134856.1:n.121T>C, NM_001318783.1:c.-97T>C, XM_017011084.3:c.-97T>C, XM_017011084.1:c.-97T>C, XM_017011083.3:c.-97T>C, XM_017011083.1:c.-97T>C

Select item 143795271618.

rs1437952716 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:5138713 (GRCh38)
6:5138947 (GRCh37)
Canonical SPDI:: NC_000006.12:5138712:G:A
Gene:: LYRM4 (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency
MAF:: A=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000006.12:g.5138713G>A, NC_000006.11:g.5138947G>A, NG_051651.1:g.127238C>T, NM_001318782.1:c.*21C>T

Select item 143494107519.

rs1434941075 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 6:5136852 (GRCh38)
6:5137086 (GRCh37)
Canonical SPDI:: NC_000006.12:5136851:C:T
Gene:: LYRM4 (Varview), LYRM4-AS1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.5136852C>T, NC_000006.11:g.5137086C>T, NG_051651.1:g.129099G>A, NM_001318782.1:c.*41G>A

Select item 143422324620.

rs1434223246 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:5260758 (GRCh38)
6:5260991 (GRCh37)
Canonical SPDI:: NC_000006.12:5260757:G:A
Gene:: FARS2 (Varview), LYRM4 (Varview)
Functional Consequence:: intron_variant,5_prime_UTR_variant,upstream_transcript_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD_exomes)
HGVS:: NC_000006.12:g.5260758G>A, NC_000006.11:g.5260991G>A, NG_033003.2:g.4408G>A, NG_051651.1:g.5193C>T, NM_020408.6:c.-25C>T, NM_020408.5:c.-25C>T, NM_020408.4:c.-25C>T, NM_001164841.3:c.-25C>T, NM_001164841.2:c.-25C>T, NM_001164841.1:c.-25C>T, NM_001164840.3:c.-25C>T, NM_001164840.2:c.-25C>T, NM_001164840.1:c.-25C>T, NR_104417.2:n.193C>T, NR_104417.1:n.193C>T, NR_104418.1:n.193C>T, NM_001318782.1:c.-25C>T, NR_134856.1:n.193C>T, NM_001318783.1:c.-25C>T, XM_017011084.3:c.-25C>T, XM_017011084.1:c.-25C>T, XM_017011083.3:c.-25C>T, XM_017011083.1:c.-25C>T

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