SNP Links for Nucleotide (Select 98986317) - SNP

Links from Nucleotide

Items: 1 to 20 of 449

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Select item 14912789151.

rs1491278915 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 22:24004472 (GRCh38)
22:24400918 (GRCh37)
Canonical SPDI:: NC_000022.11:24004471:CT:
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000022.11:g.24004472_24004473del, NT_187633.1:g.295093_295094del, NC_000022.10:g.24400918_24400919del, NR_003082.1:n.981_982del

Select item 14911490222.

rs1491149022 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 22:24004472 (GRCh38)
22:24400919 (GRCh37)
Canonical SPDI:: NC_000022.11:24004472:TTTT:TTTTT
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TTTTT=0./0 (ALFA)
HGVS:: NC_000022.11:g.24004476dup, NT_187633.1:g.295097dup, NC_000022.10:g.24400922dup, NR_003082.1:n.981dup

Select item 14909974953.

rs1490997495 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:24003774 (GRCh38)
22:24400220 (GRCh37)
Canonical SPDI:: NC_000022.11:24003773:A:G
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: upstream_transcript_variant,synonymous_variant,non_coding_transcript_variant,coding_sequence_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.24003774A>G, NT_187633.1:g.294395A>G, NC_000022.10:g.24400220A>G, NR_003081.3:n.283T>C, NR_003081.2:n.191T>C, NR_003081.1:n.191T>C, XM_024452200.2:c.168T>C, XM_024452200.1:c.168T>C, NM_001358664.2:c.186T>C, NM_001358664.1:c.186T>C, XM_024452199.2:c.198T>C, XM_024452199.1:c.198T>C, XM_024452202.2:c.198T>C, XM_024452202.1:c.198T>C, NM_001040638.1:c.186T>C, NM_015371.1:c.186T>C, NM_001039498.1:c.186T>C, NR_003082.1:n.1347T>C

Select item 14896803604.

rs1489680360 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 22:24004427 (GRCh38)
22:24400873 (GRCh37)
Canonical SPDI:: NC_000022.11:24004426:G:C
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000022.11:g.24004427G>C, NT_187633.1:g.295048G>C, NC_000022.10:g.24400873G>C, NR_003082.1:n.1027C>G

Select item 14888880115.

rs1488888011 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 22:24004334 (GRCh38)
22:24400780 (GRCh37)
Canonical SPDI:: NC_000022.11:24004333:G:A,NC_000022.11:24004333:G:C,NC_000022.11:24004333:G:T
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.00031/2 (1000Genomes)
HGVS:: NC_000022.11:g.24004334G>A, NC_000022.11:g.24004334G>C, NC_000022.11:g.24004334G>T, NT_187633.1:g.294955G>A, NT_187633.1:g.294955G>C, NT_187633.1:g.294955G>T, NC_000022.10:g.24400780G>A, NC_000022.10:g.24400780G>C, NC_000022.10:g.24400780G>T, NR_003082.1:n.1120C>T, NR_003082.1:n.1120C>G, NR_003082.1:n.1120C>A

Select item 14882372006.

rs1488237200 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 22:24004919 (GRCh38)
22:24401365 (GRCh37)
Canonical SPDI:: NC_000022.11:24004918:C:G
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000026/7 (TOPMED)
G=0.000106/2 (TOMMO)
G=0.000342/1 (KOREAN)
HGVS:: NC_000022.11:g.24004919C>G, NT_187633.1:g.295540C>G, NC_000022.10:g.24401365C>G, NR_003082.1:n.535G>C

Select item 14872503607.

rs1487250360 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:24004640 (GRCh38)
22:24401086 (GRCh37)
Canonical SPDI:: NC_000022.11:24004639:G:A
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.24004640G>A, NT_187633.1:g.295261G>A, NC_000022.10:g.24401086G>A, NR_003082.1:n.814C>T

Select item 14855911428.

rs1485591142 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>-,GG [Show Flanks]
Chromosome:: 22:24004330 (GRCh38)
22:24400776 (GRCh37)
Canonical SPDI:: NC_000022.11:24004329:GGGGG:GGGG,NC_000022.11:24004329:GGGGG:GGGGGG
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGG=0./0 (ALFA)
-=0.000008/2 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000022.11:g.24004334del, NC_000022.11:g.24004334dup, NT_187633.1:g.294955del, NT_187633.1:g.294955dup, NC_000022.10:g.24400780del, NC_000022.10:g.24400780dup, NR_003082.1:n.1124del, NR_003082.1:n.1124dup

Select item 14814620979.

rs1481462097 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:24003816 (GRCh38)
22:24400262 (GRCh37)
Canonical SPDI:: NC_000022.11:24003815:G:A
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: upstream_transcript_variant,synonymous_variant,non_coding_transcript_variant,coding_sequence_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.24003816G>A, NT_187633.1:g.294437G>A, NC_000022.10:g.24400262G>A, NR_003081.3:n.241C>T, NR_003081.2:n.149C>T, NR_003081.1:n.149C>T, XM_024452200.2:c.126C>T, XM_024452200.1:c.126C>T, NM_001358664.2:c.144C>T, NM_001358664.1:c.144C>T, XM_024452199.2:c.156C>T, XM_024452199.1:c.156C>T, XM_024452202.2:c.156C>T, XM_024452202.1:c.156C>T, NM_001040638.1:c.144C>T, NM_015371.1:c.144C>T, NM_001039498.1:c.144C>T, NR_003082.1:n.1305C>T

Select item 147824312310.

rs1478243123 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 22:24004825 (GRCh38)
22:24401271 (GRCh37)
Canonical SPDI:: NC_000022.11:24004824:CCC:CC
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
HGVS:: NC_000022.11:g.24004827del, NT_187633.1:g.295448del, NC_000022.10:g.24401273del, NR_003082.1:n.629del

Select item 147758722711.

rs1477587227 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:24005433 (GRCh38)
22:24401879 (GRCh37)
Canonical SPDI:: NC_000022.11:24005432:G:A
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: non_coding_transcript_variant,5_prime_UTR_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000043/6 (GnomAD)
HGVS:: NC_000022.11:g.24005433G>A, NT_187633.1:g.296054G>A, NC_000022.10:g.24401879G>A, NR_003081.3:n.21C>T, XM_024452200.2:c.-237C>T, XM_024452200.1:c.-237C>T, NM_001358664.2:c.-77C>T, XM_024452199.2:c.-65C>T, XM_024452199.1:c.-65C>T, XM_024452202.2:c.-65C>T, XM_024452202.1:c.-65C>T, NR_003082.1:n.21C>T

Select item 147683468812.

rs1476834688 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>- [Show Flanks]
Chromosome:: 22:24004702 (GRCh38)
22:24401148 (GRCh37)
Canonical SPDI:: NC_000022.11:24004700:TGT:T
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.000014/2 (GnomAD)
-=0.000023/6 (TOPMED)
HGVS:: NC_000022.11:g.24004702_24004703del, NT_187633.1:g.295323_295324del, NC_000022.10:g.24401148_24401149del, NR_003082.1:n.752_753del

Select item 147618695013.

rs1476186950 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 22:24005298 (GRCh38)
22:24401744 (GRCh37)
Canonical SPDI:: NC_000022.11:24005297:AA:A
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: 5_prime_UTR_variant,upstream_transcript_variant,non_coding_transcript_variant,coding_sequence_variant,frameshift_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: AA=0.000071/1 (ALFA)
-=0.000021/3 (GnomAD)
HGVS:: NC_000022.11:g.24005299del, NT_187633.1:g.295920del, NC_000022.10:g.24401745del, NR_003081.3:n.156del, NR_003081.2:n.64del, NR_003081.1:n.64del, XM_024452200.2:c.-102del, XM_024452200.1:c.-102del, NM_001358664.2:c.59del, NM_001358664.1:c.59del, XM_024452199.2:c.71del, XM_024452199.1:c.71del, XM_024452202.2:c.71del, XM_024452202.1:c.71del, NM_001040638.1:c.59del, NM_015371.1:c.59del, NM_001039498.1:c.59del, NR_003082.1:n.156del, NP_001345593.1:p.Phe20fs, XP_024307967.1:p.Phe24fs, XP_024307970.1:p.Phe24fs

Select item 147431868714.

rs1474318687 [Homo sapiens]

Variant type:: SNV:
Alleles:: C>T
Chromosome:: no mapping
Canonical SPDI:

Select item 147355292715.

rs1473552927 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 22:24004696 (GRCh38)
22:24401142 (GRCh37)
Canonical SPDI:: NC_000022.11:24004695:G:T
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000084/1 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.24004696G>T, NT_187633.1:g.295317G>T, NC_000022.10:g.24401142G>T, NR_003082.1:n.758C>A

Select item 147211338616.

rs1472113386 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 22:24004997 (GRCh38)
22:24401443 (GRCh37)
Canonical SPDI:: NC_000022.11:24004996:CT:
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.24004997_24004998del, NT_187633.1:g.295618_295619del, NC_000022.10:g.24401443_24401444del, NR_003082.1:n.456_457del

Select item 147169108617.

rs1471691086 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:24004834 (GRCh38)
22:24401280 (GRCh37)
Canonical SPDI:: NC_000022.11:24004833:C:T
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000022.11:g.24004834C>T, NT_187633.1:g.295455C>T, NC_000022.10:g.24401280C>T, NR_003082.1:n.620G>A

Select item 146905736318.

rs1469057363 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:24005443 (GRCh38)
22:24401889 (GRCh37)
Canonical SPDI:: NC_000022.11:24005442:C:T
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: non_coding_transcript_variant,5_prime_UTR_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
HGVS:: NC_000022.11:g.24005443C>T, NT_187633.1:g.296064C>T, NC_000022.10:g.24401889C>T, NR_003081.3:n.11G>A, XM_024452200.2:c.-247G>A, XM_024452200.1:c.-247G>A, NM_001358664.2:c.-87G>A, XM_024452199.2:c.-75G>A, XM_024452199.1:c.-75G>A, XM_024452202.2:c.-75G>A, XM_024452202.1:c.-75G>A, NR_003082.1:n.11G>A

Select item 146891738519.

rs1468917385 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 22:24004193 (GRCh38)
22:24400639 (GRCh37)
Canonical SPDI:: NC_000022.11:24004192:G:A,NC_000022.11:24004192:G:C
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,missense_variant,coding_sequence_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000022.11:g.24004193G>A, NC_000022.11:g.24004193G>C, NT_187633.1:g.294814G>A, NT_187633.1:g.294814G>C, NC_000022.10:g.24400639G>A, NC_000022.10:g.24400639G>C, XM_024452200.2:c.82C>T, XM_024452200.2:c.82C>G, XM_024452200.1:c.82C>T, XM_024452200.1:c.82C>G, NR_003082.1:n.1261C>T, NR_003082.1:n.1261C>G, XP_024307968.1:p.Leu28Phe, XP_024307968.1:p.Leu28Val

Select item 146637251520.

rs1466372515 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 22:24003809 (GRCh38)
22:24400255 (GRCh37)
Canonical SPDI:: NC_000022.11:24003808:G:C
Gene:: GSTT4 (Varview), LOC105372959 (Varview)
Functional Consequence:: upstream_transcript_variant,missense_variant,non_coding_transcript_variant,coding_sequence_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.24003809G>C, NT_187633.1:g.294430G>C, NC_000022.10:g.24400255G>C, NR_003081.3:n.248C>G, NR_003081.2:n.156C>G, NR_003081.1:n.156C>G, XM_024452200.2:c.133C>G, XM_024452200.1:c.133C>G, NM_001358664.2:c.151C>G, NM_001358664.1:c.151C>G, XM_024452199.2:c.163C>G, XM_024452199.1:c.163C>G, XM_024452202.2:c.163C>G, XM_024452202.1:c.163C>G, NM_001040638.1:c.151C>G, NM_015371.1:c.151C>G, NM_001039498.1:c.151C>G, NR_003082.1:n.1312C>G, XP_024307968.1:p.Leu45Val, NP_001345593.1:p.Leu51Val, XP_024307967.1:p.Leu55Val, XP_024307970.1:p.Leu55Val

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