SNP Links for Protein (Select 14249632) - SNP

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Links from Protein

Items: 1 to 20 of 138

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Select item 14787026151.

rs1478702615 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:36393964 (GRCh38)
1:36859565 (GRCh37)
Canonical SPDI:: NC_000001.11:36393963:T:C
Gene:: LSM10 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.36393964T>C, NC_000001.10:g.36859565T>C, NM_032881.3:c.166A>G, NM_032881.2:c.166A>G, NM_032881.1:c.166A>G, NP_116270.1:p.Lys56Glu

Select item 14635441682.

rs1463544168 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 1:36393931 (GRCh38)
1:36859532 (GRCh37)
Canonical SPDI:: NC_000001.11:36393930:C:A,NC_000001.11:36393930:C:T
Gene:: LSM10 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000054/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
T=0.000223/1 (Estonian)
HGVS:: NC_000001.11:g.36393931C>A, NC_000001.11:g.36393931C>T, NC_000001.10:g.36859532C>A, NC_000001.10:g.36859532C>T, NM_032881.3:c.199G>T, NM_032881.3:c.199G>A, NM_032881.2:c.199G>T, NM_032881.2:c.199G>A, NM_032881.1:c.199G>T, NM_032881.1:c.199G>A, NP_116270.1:p.Val67Phe, NP_116270.1:p.Val67Ile

Select item 14634130353.

rs1463413035 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:36393904 (GRCh38)
1:36859505 (GRCh37)
Canonical SPDI:: NC_000001.11:36393903:C:T
Gene:: LSM10 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.36393904C>T, NC_000001.10:g.36859505C>T, NM_032881.3:c.226G>A, NM_032881.2:c.226G>A, NM_032881.1:c.226G>A, NP_116270.1:p.Gly76Ser

Select item 14457911324.

rs1445791132 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:36393991 (GRCh38)
1:36859592 (GRCh37)
Canonical SPDI:: NC_000001.11:36393990:C:T
Gene:: LSM10 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.36393991C>T, NC_000001.10:g.36859592C>T, NM_032881.3:c.139G>A, NM_032881.2:c.139G>A, NM_032881.1:c.139G>A, NP_116270.1:p.Asp47Asn

Select item 14454795495.

rs1445479549 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 1:36393921 (GRCh38)
1:36859522 (GRCh37)
Canonical SPDI:: NC_000001.11:36393920:T:C,NC_000001.11:36393920:T:G
Gene:: LSM10 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000031/1 (ALFA)
G=0.000004/1 (GnomAD_exomes)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.36393921T>C, NC_000001.11:g.36393921T>G, NC_000001.10:g.36859522T>C, NC_000001.10:g.36859522T>G, NM_032881.3:c.209A>G, NM_032881.3:c.209A>C, NM_032881.2:c.209A>G, NM_032881.2:c.209A>C, NM_032881.1:c.209A>G, NM_032881.1:c.209A>C, NP_116270.1:p.Asp70Gly, NP_116270.1:p.Asp70Ala

Select item 14396125866.

rs1439612586 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:36393957 (GRCh38)
1:36859558 (GRCh37)
Canonical SPDI:: NC_000001.11:36393956:G:A
Gene:: LSM10 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.36393957G>A, NC_000001.10:g.36859558G>A, NM_032881.3:c.173C>T, NM_032881.2:c.173C>T, NM_032881.1:c.173C>T, NP_116270.1:p.Thr58Ile

Select item 14349969937.

rs1434996993 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 1:36393788 (GRCh38)
1:36859389 (GRCh37)
Canonical SPDI:: NC_000001.11:36393787:C:A,NC_000001.11:36393787:C:T
Gene:: LSM10 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.36393788C>A, NC_000001.11:g.36393788C>T, NC_000001.10:g.36859389C>A, NC_000001.10:g.36859389C>T, NM_032881.3:c.342G>T, NM_032881.3:c.342G>A, NM_032881.2:c.342G>T, NM_032881.2:c.342G>A, NM_032881.1:c.342G>T, NM_032881.1:c.342G>A

Select item 14308646858.

rs1430864685 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:36393933 (GRCh38)
1:36859534 (GRCh37)
Canonical SPDI:: NC_000001.11:36393932:T:C
Gene:: LSM10 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.36393933T>C, NC_000001.10:g.36859534T>C, NM_032881.3:c.197A>G, NM_032881.2:c.197A>G, NM_032881.1:c.197A>G, NP_116270.1:p.Gln66Arg

Select item 14248778849.

rs1424877884 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:36394001 (GRCh38)
1:36859602 (GRCh37)
Canonical SPDI:: NC_000001.11:36394000:T:C
Gene:: LSM10 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.36394001T>C, NC_000001.10:g.36859602T>C, NM_032881.3:c.129A>G, NM_032881.2:c.129A>G, NM_032881.1:c.129A>G, NP_116270.1:p.Ile43Met

Select item 141360781010.

rs1413607810 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 1:36393834 (GRCh38)
1:36859435 (GRCh37)
Canonical SPDI:: NC_000001.11:36393833:T:
Gene:: LSM10 (Varview)
Functional Consequence:: frameshift_variant,coding_sequence_variant
Validated:: by frequency
MAF:: -=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.36393834del, NC_000001.10:g.36859435del, NM_032881.3:c.296del, NM_032881.2:c.296del, NM_032881.1:c.296del, NP_116270.1:p.Gln99fs

Select item 141244198211.

rs1412441982 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:36393983 (GRCh38)
1:36859584 (GRCh37)
Canonical SPDI:: NC_000001.11:36393982:G:C
Gene:: LSM10 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.36393983G>C, NC_000001.10:g.36859584G>C, NM_032881.3:c.147C>G, NM_032881.2:c.147C>G, NM_032881.1:c.147C>G, NP_116270.1:p.Phe49Leu

Select item 140513970312.

rs1405139703 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:36394039 (GRCh38)
1:36859640 (GRCh37)
Canonical SPDI:: NC_000001.11:36394038:C:T
Gene:: LSM10 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.36394039C>T, NC_000001.10:g.36859640C>T, NM_032881.3:c.91G>A, NM_032881.2:c.91G>A, NM_032881.1:c.91G>A, NP_116270.1:p.Val31Met

Select item 140083759113.

rs1400837591 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 1:36393987 (GRCh38)
1:36859588 (GRCh37)
Canonical SPDI:: NC_000001.11:36393986:G:A,NC_000001.11:36393986:G:T
Gene:: LSM10 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000008/2 (TOPMED)
T=0.000035/1 (TOMMO)
HGVS:: NC_000001.11:g.36393987G>A, NC_000001.11:g.36393987G>T, NC_000001.10:g.36859588G>A, NC_000001.10:g.36859588G>T, NM_032881.3:c.143C>T, NM_032881.3:c.143C>A, NM_032881.2:c.143C>T, NM_032881.2:c.143C>A, NM_032881.1:c.143C>T, NM_032881.1:c.143C>A, NP_116270.1:p.Ala48Val, NP_116270.1:p.Ala48Asp

Select item 137755453414.

rs1377554534 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 1:36393763 (GRCh38)
1:36859365 (GRCh37)
Canonical SPDI:: NC_000001.11:36393763:A:AA
Gene:: LSM10 (Varview)
Functional Consequence:: stop_gained,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.36393764dup, NC_000001.10:g.36859365dup, NM_032881.3:c.366dup, NM_032881.2:c.366dup, NM_032881.1:c.366dup, NP_116270.1:p.Lys123Ter

Select item 137664071315.

rs1376640713 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:36394031 (GRCh38)
1:36859632 (GRCh37)
Canonical SPDI:: NC_000001.11:36394030:C:G
Gene:: LSM10 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.36394031C>G, NC_000001.10:g.36859632C>G, NM_032881.3:c.99G>C, NM_032881.2:c.99G>C, NM_032881.1:c.99G>C

Select item 137313608816.

rs1373136088 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:36393996 (GRCh38)
1:36859597 (GRCh37)
Canonical SPDI:: NC_000001.11:36393995:T:C
Gene:: LSM10 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.36393996T>C, NC_000001.10:g.36859597T>C, NM_032881.3:c.134A>G, NM_032881.2:c.134A>G, NM_032881.1:c.134A>G, NP_116270.1:p.Asn45Ser

Select item 136803346517.

rs1368033465 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:36394070 (GRCh38)
1:36859671 (GRCh37)
Canonical SPDI:: NC_000001.11:36394069:T:C
Gene:: LSM10 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000224/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000223/1 (Estonian)
HGVS:: NC_000001.11:g.36394070T>C, NC_000001.10:g.36859671T>C, NM_032881.3:c.60A>G, NM_032881.2:c.60A>G, NM_032881.1:c.60A>G

Select item 136718322418.

rs1367183224 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:36394030 (GRCh38)
1:36859631 (GRCh37)
Canonical SPDI:: NC_000001.11:36394029:G:A
Gene:: LSM10 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000425/7 (TOMMO)
HGVS:: NC_000001.11:g.36394030G>A, NC_000001.10:g.36859631G>A, NM_032881.3:c.100C>T, NM_032881.2:c.100C>T, NM_032881.1:c.100C>T, NP_116270.1:p.Arg34Trp

Select item 135814362019.

rs1358143620 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:36393911 (GRCh38)
1:36859512 (GRCh37)
Canonical SPDI:: NC_000001.11:36393910:A:G
Gene:: LSM10 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.36393911A>G, NC_000001.10:g.36859512A>G, NM_032881.3:c.219T>C, NM_032881.2:c.219T>C, NM_032881.1:c.219T>C

Select item 135006626920.

rs1350066269 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:36393943 (GRCh38)
1:36859544 (GRCh37)
Canonical SPDI:: NC_000001.11:36393942:A:T
Gene:: LSM10 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000001.11:g.36393943A>T, NC_000001.10:g.36859544A>T, NM_032881.3:c.187T>A, NM_032881.2:c.187T>A, NM_032881.1:c.187T>A, NP_116270.1:p.Trp63Arg