SNP Links for Protein (Select 156104886) - SNP

Links from Protein

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Select item 14902769441.

rs1490276944 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:42680104 (GRCh38)
17:40832122 (GRCh37)
Canonical SPDI:: NC_000017.11:42680103:T:C
Gene:: CCR10 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.42680104T>C, NC_000017.10:g.40832122T>C, NG_042091.1:g.2491T>C, NM_016602.3:c.538A>G, NM_016602.2:c.538A>G, NP_057686.2:p.Ser180Gly

Select item 14839257532.

rs1483925753 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:42680193 (GRCh38)
17:40832211 (GRCh37)
Canonical SPDI:: NC_000017.11:42680192:G:A
Gene:: CCR10 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000051/1 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.42680193G>A, NC_000017.10:g.40832211G>A, NG_042091.1:g.2580G>A, NM_016602.3:c.449C>T, NM_016602.2:c.449C>T, NP_057686.2:p.Pro150Leu

Select item 14818325623.

rs1481832562 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:42680195 (GRCh38)
17:40832213 (GRCh37)
Canonical SPDI:: NC_000017.11:42680194:C:T
Gene:: CCR10 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0./0 (GnomAD)
HGVS:: NC_000017.11:g.42680195C>T, NC_000017.10:g.40832213C>T, NG_042091.1:g.2582C>T, NM_016602.3:c.447G>A, NM_016602.2:c.447G>A

Select item 14815186804.

rs1481518680 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 17:42680496 (GRCh38)
17:40832514 (GRCh37)
Canonical SPDI:: NC_000017.11:42680495:A:T
Gene:: CCR10 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.42680496A>T, NC_000017.10:g.40832514A>T, NG_042091.1:g.2883A>T, NM_016602.3:c.146T>A, NM_016602.2:c.146T>A, NP_057686.2:p.Leu49Gln

Select item 14803415205.

rs1480341520 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 17:42680038 (GRCh38)
17:40832056 (GRCh37)
Canonical SPDI:: NC_000017.11:42680037:T:A
Gene:: CCR10 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: A=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.42680038T>A, NC_000017.10:g.40832056T>A, NG_042091.1:g.2425T>A, NM_016602.3:c.604A>T, NM_016602.2:c.604A>T, NP_057686.2:p.Thr202Ser

Select item 14795847086.

rs1479584708 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 17:42680434 (GRCh38)
17:40832452 (GRCh37)
Canonical SPDI:: NC_000017.11:42680433:G:A,NC_000017.11:42680433:G:C
Gene:: CCR10 (Varview)
Functional Consequence:: stop_gained,coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
A=0.000071/1 (TOMMO)
HGVS:: NC_000017.11:g.42680434G>A, NC_000017.11:g.42680434G>C, NC_000017.10:g.40832452G>A, NC_000017.10:g.40832452G>C, NG_042091.1:g.2821G>A, NG_042091.1:g.2821G>C, NM_016602.3:c.208C>T, NM_016602.3:c.208C>G, NM_016602.2:c.208C>T, NM_016602.2:c.208C>G, NP_057686.2:p.Arg70Ter, NP_057686.2:p.Arg70Gly

Select item 14795687097.

rs1479568709 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:42679887 (GRCh38)
17:40831905 (GRCh37)
Canonical SPDI:: NC_000017.11:42679886:A:G
Gene:: CCR10 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: G=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.42679887A>G, NC_000017.10:g.40831905A>G, NG_042091.1:g.2274A>G, NM_016602.3:c.755T>C, NM_016602.2:c.755T>C, NP_057686.2:p.Leu252Pro

Select item 14753033278.

rs1475303327 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 17:42680592 (GRCh38)
17:40832610 (GRCh37)
Canonical SPDI:: NC_000017.11:42680591:T:A
Gene:: CCR10 (Varview), CNTNAP1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000017.11:g.42680592T>A, NC_000017.10:g.40832610T>A, NG_042091.1:g.2979T>A, NM_016602.3:c.50A>T, NM_016602.2:c.50A>T, NP_057686.2:p.Asp17Val

Select item 14749379989.

rs1474937998 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 17:42680254 (GRCh38)
17:40832272 (GRCh37)
Canonical SPDI:: NC_000017.11:42680253:A:C
Gene:: CCR10 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: C=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.42680254A>C, NC_000017.10:g.40832272A>C, NG_042091.1:g.2641A>C, NM_016602.3:c.388T>G, NM_016602.2:c.388T>G, NP_057686.2:p.Phe130Val

Select item 147469367910.

rs1474693679 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 17:42679583 (GRCh38)
17:40831601 (GRCh37)
Canonical SPDI:: NC_000017.11:42679582:C:G
Gene:: CCR10 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.42679583C>G, NC_000017.10:g.40831601C>G, NG_042091.1:g.1970C>G, NM_016602.3:c.1059G>C, NM_016602.2:c.1059G>C

Select item 147405369511.

rs1474053695 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 17:42681806 (GRCh38)
17:40833824 (GRCh37)
Canonical SPDI:: NC_000017.11:42681805:T:A,NC_000017.11:42681805:T:G
Gene:: CCR10 (Varview), CNTNAP1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.42681806T>A, NC_000017.11:g.42681806T>G, NC_000017.10:g.40833824T>A, NC_000017.10:g.40833824T>G, NG_042091.1:g.4193T>A, NG_042091.1:g.4193T>G, NM_016602.3:c.18A>T, NM_016602.3:c.18A>C, NM_016602.2:c.18A>T, NM_016602.2:c.18A>C

Select item 147280020712.

rs1472800207 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 17:42679609 (GRCh38)
17:40831627 (GRCh37)
Canonical SPDI:: NC_000017.11:42679608:GGGG:GGG
Gene:: CCR10 (Varview)
Functional Consequence:: frameshift_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.42679612del, NC_000017.10:g.40831630del, NG_042091.1:g.1999del, NM_016602.3:c.1033del, NM_016602.2:c.1033del, NP_057686.2:p.Arg345fs

Select item 146973887713.

rs1469738877 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTGG>- [Show Flanks]
Chromosome:: 17:42680448 (GRCh38)
17:40832466 (GRCh37)
Canonical SPDI:: NC_000017.11:42680442:GGTGGGTGG:GGTGG
Gene:: CCR10 (Varview)
Functional Consequence:: frameshift_variant,coding_sequence_variant
Validated:: by frequency
MAF:: -=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.42680444GTGG[1], NC_000017.10:g.40832462GTGG[1], NG_042091.1:g.2831GTGG[1], NM_016602.3:c.196_199del, NM_016602.2:c.196_199del, NP_057686.2:p.His66fs

Select item 146843739714.

rs1468437397 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:42679658 (GRCh38)
17:40831676 (GRCh37)
Canonical SPDI:: NC_000017.11:42679657:C:T
Gene:: CCR10 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
HGVS:: NC_000017.11:g.42679658C>T, NC_000017.10:g.40831676C>T, NG_042091.1:g.2045C>T, NM_016602.3:c.984G>A, NM_016602.2:c.984G>A

Select item 146825854715.

rs1468258547 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:42680368 (GRCh38)
17:40832386 (GRCh37)
Canonical SPDI:: NC_000017.11:42680367:C:A
Gene:: CCR10 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
HGVS:: NC_000017.11:g.42680368C>A, NC_000017.10:g.40832386C>A, NG_042091.1:g.2755C>A, NM_016602.3:c.274G>T, NM_016602.2:c.274G>T, NP_057686.2:p.Ala92Ser

Select item 146083705916.

rs1460837059 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 17:42679915 (GRCh38)
17:40831933 (GRCh37)
Canonical SPDI:: NC_000017.11:42679914:G:T
Gene:: CCR10 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
HGVS:: NC_000017.11:g.42679915G>T, NC_000017.10:g.40831933G>T, NG_042091.1:g.2302G>T, NM_016602.3:c.727C>A, NM_016602.2:c.727C>A

Select item 145983888917.

rs1459838889 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 17:42679566 (GRCh38)
17:40831584 (GRCh37)
Canonical SPDI:: NC_000017.11:42679565:G:A,NC_000017.11:42679565:G:C
Gene:: CCR10 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000019/5 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000017.11:g.42679566G>A, NC_000017.11:g.42679566G>C, NC_000017.10:g.40831584G>A, NC_000017.10:g.40831584G>C, NG_042091.1:g.1953G>A, NG_042091.1:g.1953G>C, NM_016602.3:c.1076C>T, NM_016602.3:c.1076C>G, NM_016602.2:c.1076C>T, NM_016602.2:c.1076C>G, NP_057686.2:p.Ser359Phe, NP_057686.2:p.Ser359Cys

Select item 145962347718.

rs1459623477 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 17:42680240 (GRCh38)
17:40832258 (GRCh37)
Canonical SPDI:: NC_000017.11:42680239:G:T
Gene:: CCR10 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency
MAF:: T=0.000005/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.42680240G>T, NC_000017.10:g.40832258G>T, NG_042091.1:g.2627G>T, NM_016602.3:c.402C>A, NM_016602.2:c.402C>A

Select item 145937830719.

rs1459378307 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:42680074 (GRCh38)
17:40832092 (GRCh37)
Canonical SPDI:: NC_000017.11:42680073:G:A
Gene:: CCR10 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: A=0.000111/1 (ALFA)
A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.42680074G>A, NC_000017.10:g.40832092G>A, NG_042091.1:g.2461G>A, NM_016602.3:c.568C>T, NM_016602.2:c.568C>T, NP_057686.2:p.Arg190Cys

Select item 145903301020.

rs1459033010 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:42679837 (GRCh38)
17:40831855 (GRCh37)
Canonical SPDI:: NC_000017.11:42679836:G:A
Gene:: CCR10 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.42679837G>A, NC_000017.10:g.40831855G>A, NG_042091.1:g.2224G>A, NM_016602.3:c.805C>T, NM_016602.2:c.805C>T

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