SNP Links for Protein (Select 21686977) - SNP

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:43624183 (GRCh38)
19:44128335 (GRCh37)
Canonical SPDI:: NC_000019.10:43624182:G:A
Gene:: CADM4 (Varview), LOC105372411 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,downstream_transcript_variant,genic_upstream_transcript_variant,coding_sequence_variant,synonymous_variant,intron_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000019.10:g.43624183G>A, NC_000019.9:g.44128335G>A, NM_145296.2:c.988C>T, NM_145296.1:c.988C>T, XM_017026452.1:c.931C>T

Select item 14742629196.

rs1474262919 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 19:43625199 (GRCh38)
19:44129351 (GRCh37)
Canonical SPDI:: NC_000019.10:43625198:C:A
Gene:: CADM4 (Varview), LOC105372411 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,synonymous_variant,intron_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.43625199C>A, NC_000019.9:g.44129351C>A, XM_005258620.3:c.807G>T, XM_005258620.2:c.807G>T, XM_005258620.1:c.807G>T, NM_145296.2:c.807G>T, NM_145296.1:c.807G>T, XM_017026452.1:c.750G>T, XM_047438387.1:c.807G>T

Select item 14742083177.

rs1474208317 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 19:43639783 (GRCh38)
19:44143935 (GRCh37)
Canonical SPDI:: NC_000019.10:43639782:C:A,NC_000019.10:43639782:C:G,NC_000019.10:43639782:C:T
Gene:: CADM4 (Varview)
Functional Consequence:: missense_variant,intron_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000019.10:g.43639783C>A, NC_000019.10:g.43639783C>G, NC_000019.10:g.43639783C>T, NC_000019.9:g.44143935C>A, NC_000019.9:g.44143935C>G, NC_000019.9:g.44143935C>T, XM_005258620.3:c.8G>T, XM_005258620.3:c.8G>C, XM_005258620.3:c.8G>A, XM_005258620.2:c.8G>T, XM_005258620.2:c.8G>C, XM_005258620.2:c.8G>A, XM_005258620.1:c.8G>T, XM_005258620.1:c.8G>C, XM_005258620.1:c.8G>A, NM_145296.2:c.8G>T, NM_145296.2:c.8G>C, NM_145296.2:c.8G>A, NM_145296.1:c.8G>T, NM_145296.1:c.8G>C, NM_145296.1:c.8G>A, XM_047438387.1:c.8G>T, XM_047438387.1:c.8G>C, XM_047438387.1:c.8G>A, XP_005258677.1:p.Arg3Leu, XP_005258677.1:p.Arg3Pro, XP_005258677.1:p.Arg3Gln, NP_660339.1:p.Arg3Leu, NP_660339.1:p.Arg3Pro, NP_660339.1:p.Arg3Gln, XP_047294343.1:p.Arg3Leu, XP_047294343.1:p.Arg3Pro, XP_047294343.1:p.Arg3Gln

Select item 14741879698.

rs1474187969 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:43626914 (GRCh38)
19:44131066 (GRCh37)
Canonical SPDI:: NC_000019.10:43626913:G:A
Gene:: CADM4 (Varview), LOC105372411 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,coding_sequence_variant,synonymous_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: A=0.000013/3 (GnomAD_exomes)
HGVS:: NC_000019.10:g.43626914G>A, NC_000019.9:g.44131066G>A, XM_005258620.3:c.369C>T, XM_005258620.2:c.369C>T, XM_005258620.1:c.369C>T, NM_145296.2:c.369C>T, NM_145296.1:c.369C>T, XM_017026452.1:c.312C>T, XM_047438387.1:c.369C>T

Select item 14698911139.

rs1469891113 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:43625113 (GRCh38)
19:44129265 (GRCh37)
Canonical SPDI:: NC_000019.10:43625112:C:T
Gene:: CADM4 (Varview), LOC105372411 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,missense_variant,intron_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.43625113C>T, NC_000019.9:g.44129265C>T, XM_005258620.3:c.893G>A, XM_005258620.2:c.893G>A, XM_005258620.1:c.893G>A, NM_145296.2:c.893G>A, NM_145296.1:c.893G>A, XM_017026452.1:c.836G>A, XM_047438387.1:c.893G>A, XP_005258677.1:p.Gly298Asp, NP_660339.1:p.Gly298Asp, XP_016881941.1:p.Gly279Asp, XP_047294343.1:p.Gly298Asp

Select item 146951536710.

rs1469515367 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 19:43625975 (GRCh38)
19:44130127 (GRCh37)
Canonical SPDI:: NC_000019.10:43625974:A:T
Gene:: CADM4 (Varview), LOC105372411 (Varview)
Functional Consequence:: missense_variant,genic_upstream_transcript_variant,coding_sequence_variant,upstream_transcript_variant,intron_variant
HGVS:: NC_000019.10:g.43625975A>T, NC_000019.9:g.44130127A>T, XM_005258620.3:c.691T>A, XM_005258620.2:c.691T>A, XM_005258620.1:c.691T>A, NM_145296.2:c.691T>A, NM_145296.1:c.691T>A, XM_017026452.1:c.634T>A, XM_047438387.1:c.691T>A, XP_005258677.1:p.Ser231Thr, NP_660339.1:p.Ser231Thr, XP_016881941.1:p.Ser212Thr, XP_047294343.1:p.Ser231Thr

Select item 146792636611.

rs1467926366 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 19:43626823 (GRCh38)
19:44130975 (GRCh37)
Canonical SPDI:: NC_000019.10:43626822:C:A,NC_000019.10:43626822:C:T
Gene:: CADM4 (Varview), LOC105372411 (Varview)
Functional Consequence:: missense_variant,genic_upstream_transcript_variant,coding_sequence_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000019.10:g.43626823C>A, NC_000019.10:g.43626823C>T, NC_000019.9:g.44130975C>A, NC_000019.9:g.44130975C>T, XM_005258620.3:c.460G>T, XM_005258620.3:c.460G>A, XM_005258620.2:c.460G>T, XM_005258620.2:c.460G>A, XM_005258620.1:c.460G>T, XM_005258620.1:c.460G>A, NM_145296.2:c.460G>T, NM_145296.2:c.460G>A, NM_145296.1:c.460G>T, NM_145296.1:c.460G>A, XM_017026452.1:c.403G>T, XM_017026452.1:c.403G>A, XM_047438387.1:c.460G>T, XM_047438387.1:c.460G>A, XP_005258677.1:p.Ala154Ser, XP_005258677.1:p.Ala154Thr, NP_660339.1:p.Ala154Ser, NP_660339.1:p.Ala154Thr, XP_016881941.1:p.Ala135Ser, XP_016881941.1:p.Ala135Thr, XP_047294343.1:p.Ala154Ser, XP_047294343.1:p.Ala154Thr

Select item 146705593712.

rs1467055937 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:43626836 (GRCh38)
19:44130988 (GRCh37)
Canonical SPDI:: NC_000019.10:43626835:C:T
Gene:: CADM4 (Varview), LOC105372411 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,coding_sequence_variant,synonymous_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.43626836C>T, NC_000019.9:g.44130988C>T, XM_005258620.3:c.447G>A, XM_005258620.2:c.447G>A, XM_005258620.1:c.447G>A, NM_145296.2:c.447G>A, NM_145296.1:c.447G>A, XM_017026452.1:c.390G>A, XM_047438387.1:c.447G>A

Select item 146667825713.

rs1466678257 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:43624176 (GRCh38)
19:44128328 (GRCh37)
Canonical SPDI:: NC_000019.10:43624175:A:G
Gene:: CADM4 (Varview), LOC105372411 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,intron_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000019.10:g.43624176A>G, NC_000019.9:g.44128328A>G, NM_145296.2:c.995T>C, NM_145296.1:c.995T>C, XM_017026452.1:c.938T>C, NP_660339.1:p.Leu332Pro, XP_016881941.1:p.Leu313Pro

Select item 146151941114.

rs1461519411 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:43626126 (GRCh38)
19:44130278 (GRCh37)
Canonical SPDI:: NC_000019.10:43626125:T:C
Gene:: CADM4 (Varview), LOC105372411 (Varview)
Functional Consequence:: upstream_transcript_variant,missense_variant,coding_sequence_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000019.10:g.43626126T>C, NC_000019.9:g.44130278T>C, XM_005258620.3:c.662A>G, XM_005258620.2:c.662A>G, XM_005258620.1:c.662A>G, NM_145296.2:c.662A>G, NM_145296.1:c.662A>G, XM_017026452.1:c.605A>G, XM_047438387.1:c.662A>G, XP_005258677.1:p.Gln221Arg, NP_660339.1:p.Gln221Arg, XP_016881941.1:p.Gln202Arg, XP_047294343.1:p.Gln221Arg

Select item 145459983715.

rs1454599837 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 19:43624233 (GRCh38)
19:44128385 (GRCh37)
Canonical SPDI:: NC_000019.10:43624232:G:T
Gene:: CADM4 (Varview), LOC105372411 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,intron_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000019.10:g.43624233G>T, NC_000019.9:g.44128385G>T, NM_145296.2:c.938C>A, NM_145296.1:c.938C>A, XM_017026452.1:c.881C>A, NP_660339.1:p.Ala313Glu, XP_016881941.1:p.Ala294Glu

Select item 145348193216.

rs1453481932 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:43626825 (GRCh38)
19:44130977 (GRCh37)
Canonical SPDI:: NC_000019.10:43626824:G:A
Gene:: CADM4 (Varview), LOC105372411 (Varview)
Functional Consequence:: upstream_transcript_variant,missense_variant,coding_sequence_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000111/1 (ALFA)
A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000019.10:g.43626825G>A, NC_000019.9:g.44130977G>A, XM_005258620.3:c.458C>T, XM_005258620.2:c.458C>T, XM_005258620.1:c.458C>T, NM_145296.2:c.458C>T, NM_145296.1:c.458C>T, XM_017026452.1:c.401C>T, XM_047438387.1:c.458C>T, XP_005258677.1:p.Ala153Val, NP_660339.1:p.Ala153Val, XP_016881941.1:p.Ala134Val, XP_047294343.1:p.Ala153Val

Select item 145305231517.

rs1453052315 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 19:43625224 (GRCh38)
19:44129376 (GRCh37)
Canonical SPDI:: NC_000019.10:43625223:C:A
Gene:: CADM4 (Varview), LOC105372411 (Varview)
Functional Consequence:: intron_variant,missense_variant,coding_sequence_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.43625224C>A, NC_000019.9:g.44129376C>A, XM_005258620.3:c.782G>T, XM_005258620.2:c.782G>T, XM_005258620.1:c.782G>T, NM_145296.2:c.782G>T, NM_145296.1:c.782G>T, XM_017026452.1:c.725G>T, XM_047438387.1:c.782G>T, XP_005258677.1:p.Gly261Val, NP_660339.1:p.Gly261Val, XP_016881941.1:p.Gly242Val, XP_047294343.1:p.Gly261Val

Select item 145104106118.

rs1451041061 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:43627681 (GRCh38)
19:44131833 (GRCh37)
Canonical SPDI:: NC_000019.10:43627680:G:A
Gene:: CADM4 (Varview), LOC105372411 (Varview)
Functional Consequence:: upstream_transcript_variant,coding_sequence_variant,genic_upstream_transcript_variant,intron_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000019.10:g.43627681G>A, NC_000019.9:g.44131833G>A, XM_005258620.3:c.174C>T, XM_005258620.2:c.174C>T, XM_005258620.1:c.174C>T, NM_145296.2:c.174C>T, NM_145296.1:c.174C>T, XM_017026452.1:c.117C>T, XM_047438387.1:c.174C>T

Select item 144860470519.

rs1448604705 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 19:43625093 (GRCh38)
19:44129245 (GRCh37)
Canonical SPDI:: NC_000019.10:43625092:C:A
Gene:: CADM4 (Varview), LOC105372411 (Varview)
Functional Consequence:: intron_variant,missense_variant,coding_sequence_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.43625093C>A, NC_000019.9:g.44129245C>A, XM_005258620.3:c.913G>T, XM_005258620.2:c.913G>T, XM_005258620.1:c.913G>T, NM_145296.2:c.913G>T, NM_145296.1:c.913G>T, XM_017026452.1:c.856G>T, XM_047438387.1:c.913G>T, XP_005258677.1:p.Val305Leu, NP_660339.1:p.Val305Leu, XP_016881941.1:p.Val286Leu, XP_047294343.1:p.Val305Leu

Select item 144128868520.

rs1441288685 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:43626862 (GRCh38)
19:44131014 (GRCh37)
Canonical SPDI:: NC_000019.10:43626861:C:T
Gene:: CADM4 (Varview), LOC105372411 (Varview)
Functional Consequence:: upstream_transcript_variant,missense_variant,coding_sequence_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000019.10:g.43626862C>T, NC_000019.9:g.44131014C>T, XM_005258620.3:c.421G>A, XM_005258620.2:c.421G>A, XM_005258620.1:c.421G>A, NM_145296.2:c.421G>A, NM_145296.1:c.421G>A, XM_017026452.1:c.364G>A, XM_047438387.1:c.421G>A, XP_005258677.1:p.Val141Met, NP_660339.1:p.Val141Met, XP_016881941.1:p.Val122Met, XP_047294343.1:p.Val141Met

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