SNP Links for Protein (Select 38455402) - SNP

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Links from Protein

Items: 1 to 20 of 221

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Select item 14909970251.

rs1490997025 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:128151654 (GRCh38)
9:130913933 (GRCh37)
Canonical SPDI:: NC_000009.12:128151653:T:A
Gene:: LCN2 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
HGVS:: NC_000009.12:g.128151654T>A, NC_000009.11:g.130913933T>A, NM_005564.5:c.292T>A, NM_005564.4:c.292T>A, NM_005564.3:c.292T>A, XM_047423376.1:c.292T>A, NP_005555.2:p.Tyr98Asn, XP_047279332.1:p.Tyr98Asn

Select item 14908201392.

rs1490820139 [Homo sapiens]

Variant type:: INS
Alleles:: ->TGAAAGAAGA [Show Flanks]
Chromosome:: 9:128150320 (GRCh38)
9:130912600 (GRCh37)
Canonical SPDI:: NC_000009.12:128150320::TGAAAGAAGA
Gene:: LCN2 (Varview)
Functional Consequence:: coding_sequence_variant,frameshift_variant
Validated:: by frequency
MAF:: TGAAAGAAGA=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.128150320_128150321insTGAAAGAAGA, NC_000009.11:g.130912599_130912600insTGAAAGAAGA, NM_005564.5:c.221_222insTGAAAGAAGA, NM_005564.4:c.221_222insTGAAAGAAGA, NM_005564.3:c.221_222insTGAAAGAAGA, XM_047423376.1:c.221_222insTGAAAGAAGA, NP_005555.2:p.Ile75fs, XP_047279332.1:p.Ile75fs

Select item 14811015843.

rs1481101584 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 9:128150276 (GRCh38)
9:130912555 (GRCh37)
Canonical SPDI:: NC_000009.12:128150275:T:A,NC_000009.12:128150275:T:C
Gene:: LCN2 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant,missense_variant
Validated:: by frequency,by cluster
MAF:: C=0.000004/1 (GnomAD_exomes)
A=0.000342/1 (KOREAN)
HGVS:: NC_000009.12:g.128150276T>A, NC_000009.12:g.128150276T>C, NC_000009.11:g.130912555T>A, NC_000009.11:g.130912555T>C, NM_005564.5:c.177T>A, NM_005564.5:c.177T>C, NM_005564.4:c.177T>A, NM_005564.4:c.177T>C, NM_005564.3:c.177T>A, NM_005564.3:c.177T>C, XM_047423376.1:c.177T>A, XM_047423376.1:c.177T>C, NP_005555.2:p.Asn59Lys, XP_047279332.1:p.Asn59Lys

Select item 14772612074.

rs1477261207 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:128151706 (GRCh38)
9:130913985 (GRCh37)
Canonical SPDI:: NC_000009.12:128151705:G:C
Gene:: LCN2 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.128151706G>C, NC_000009.11:g.130913985G>C, NM_005564.5:c.344G>C, NM_005564.4:c.344G>C, NM_005564.3:c.344G>C, XM_047423376.1:c.344G>C, NP_005555.2:p.Gly115Ala, XP_047279332.1:p.Gly115Ala

Select item 14704955405.

rs1470495540 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:128150265 (GRCh38)
9:130912544 (GRCh37)
Canonical SPDI:: NC_000009.12:128150264:C:T
Gene:: LCN2 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.128150265C>T, NC_000009.11:g.130912544C>T, NM_005564.5:c.166C>T, NM_005564.4:c.166C>T, NM_005564.3:c.166C>T, XM_047423376.1:c.166C>T

Select item 14637125846.

rs1463712584 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:128149532 (GRCh38)
9:130911811 (GRCh37)
Canonical SPDI:: NC_000009.12:128149531:C:T
Gene:: LCN2 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: T=0.000047/1 (ALFA)
T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.128149532C>T, NC_000009.11:g.130911811C>T, NM_005564.5:c.7C>T, NM_005564.4:c.7C>T, NM_005564.3:c.7C>T, XM_047423376.1:c.7C>T

Select item 14589887567.

rs1458988756 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:128151958 (GRCh38)
9:130914237 (GRCh37)
Canonical SPDI:: NC_000009.12:128151957:C:A,NC_000009.12:128151957:C:T
Gene:: LCN2 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000009.12:g.128151958C>A, NC_000009.12:g.128151958C>T, NC_000009.11:g.130914237C>A, NC_000009.11:g.130914237C>T, NM_005564.5:c.408C>A, NM_005564.5:c.408C>T, NM_005564.4:c.408C>A, NM_005564.4:c.408C>T, NM_005564.3:c.408C>A, NM_005564.3:c.408C>T, XM_047423376.1:c.408C>A, XM_047423376.1:c.408C>T, NP_005555.2:p.Asn136Lys, XP_047279332.1:p.Asn136Lys

Select item 14574689208.

rs1457468920 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 9:128151707 (GRCh38)
9:130913986 (GRCh37)
Canonical SPDI:: NC_000009.12:128151706:C:G
Gene:: LCN2 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
G=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.128151707C>G, NC_000009.11:g.130913986C>G, NM_005564.5:c.345C>G, NM_005564.4:c.345C>G, NM_005564.3:c.345C>G, XM_047423376.1:c.345C>G

Select item 14535871419.

rs1453587141 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:128152274 (GRCh38)
9:130914553 (GRCh37)
Canonical SPDI:: NC_000009.12:128152273:T:C
Gene:: LCN2 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.128152274T>C, NC_000009.11:g.130914553T>C, NM_005564.5:c.567T>C, NM_005564.4:c.567T>C, NM_005564.3:c.567T>C, XM_047423376.1:c.567T>C

Select item 145277946210.

rs1452779462 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 9:128151979 (GRCh38)
9:130914258 (GRCh37)
Canonical SPDI:: NC_000009.12:128151978:C:
Gene:: LCN2 (Varview)
Functional Consequence:: coding_sequence_variant,frameshift_variant
Validated:: by frequency
MAF:: -=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.128151979del, NC_000009.11:g.130914258del, NM_005564.5:c.429del, NM_005564.4:c.429del, NM_005564.3:c.429del, XM_047423376.1:c.429del, NP_005555.2:p.Phe143fs, XP_047279332.1:p.Phe143fs

Select item 145236159511.

rs1452361595 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 9:128151980 (GRCh38)
9:130914259 (GRCh37)
Canonical SPDI:: NC_000009.12:128151979:A:T
Gene:: LCN2 (Varview)
Functional Consequence:: coding_sequence_variant,stop_gained
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.128151980A>T, NC_000009.11:g.130914259A>T, NM_005564.5:c.430A>T, NM_005564.4:c.430A>T, NM_005564.3:c.430A>T, XM_047423376.1:c.430A>T, NP_005555.2:p.Lys144Ter, XP_047279332.1:p.Lys144Ter

Select item 145102773512.

rs1451027735 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 9:128153115 (GRCh38)
9:130915394 (GRCh37)
Canonical SPDI:: NC_000009.12:128153114:G:T
Gene:: LCN2 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.128153115G>T, NC_000009.11:g.130915394G>T, NM_005564.5:c.593G>T, NM_005564.4:c.593G>T, NM_005564.3:c.593G>T, XM_047423376.1:c.593G>T, NP_005555.2:p.Gly198Val, XP_047279332.1:p.Gly198Val

Select item 144359706513.

rs1443597065 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:128150301 (GRCh38)
9:130912580 (GRCh37)
Canonical SPDI:: NC_000009.12:128150300:C:A
Gene:: LCN2 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.128150301C>A, NC_000009.11:g.130912580C>A, NM_005564.5:c.202C>A, NM_005564.4:c.202C>A, NM_005564.3:c.202C>A, XM_047423376.1:c.202C>A, NP_005555.2:p.Pro68Thr, XP_047279332.1:p.Pro68Thr

Select item 143813793914.

rs1438137939 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:128150317 (GRCh38)
9:130912596 (GRCh37)
Canonical SPDI:: NC_000009.12:128150316:C:A
Gene:: LCN2 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.128150317C>A, NC_000009.11:g.130912596C>A, NM_005564.5:c.218C>A, NM_005564.4:c.218C>A, NM_005564.3:c.218C>A, XM_047423376.1:c.218C>A, NP_005555.2:p.Ala73Asp, XP_047279332.1:p.Ala73Asp

Select item 143702098415.

rs1437020984 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:128150257 (GRCh38)
9:130912536 (GRCh37)
Canonical SPDI:: NC_000009.12:128150256:T:C
Gene:: LCN2 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by cluster
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.128150257T>C, NC_000009.11:g.130912536T>C, NM_005564.5:c.158T>C, NM_005564.4:c.158T>C, NM_005564.3:c.158T>C, XM_047423376.1:c.158T>C, NP_005555.2:p.Val53Ala, XP_047279332.1:p.Val53Ala

Select item 143533322716.

rs1435333227 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 9:128151648 (GRCh38)
9:130913927 (GRCh37)
Canonical SPDI:: NC_000009.12:128151647:T:C,NC_000009.12:128151647:T:G
Gene:: LCN2 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.128151648T>C, NC_000009.12:g.128151648T>G, NC_000009.11:g.130913927T>C, NC_000009.11:g.130913927T>G, NM_005564.5:c.286T>C, NM_005564.5:c.286T>G, NM_005564.4:c.286T>C, NM_005564.4:c.286T>G, NM_005564.3:c.286T>C, NM_005564.3:c.286T>G, XM_047423376.1:c.286T>C, XM_047423376.1:c.286T>G, NP_005555.2:p.Cys96Arg, NP_005555.2:p.Cys96Gly, XP_047279332.1:p.Cys96Arg, XP_047279332.1:p.Cys96Gly

Select item 143248305217.

rs1432483052 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:128152193 (GRCh38)
9:130914472 (GRCh37)
Canonical SPDI:: NC_000009.12:128152192:G:C
Gene:: LCN2 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.128152193G>C, NC_000009.11:g.130914472G>C, NM_005564.5:c.486G>C, NM_005564.4:c.486G>C, NM_005564.3:c.486G>C, XM_047423376.1:c.486G>C, NP_005555.2:p.Lys162Asn, XP_047279332.1:p.Lys162Asn

Select item 143056500618.

rs1430565006 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:128149572 (GRCh38)
9:130911851 (GRCh37)
Canonical SPDI:: NC_000009.12:128149571:T:C
Gene:: LCN2 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.128149572T>C, NC_000009.11:g.130911851T>C, NM_005564.5:c.47T>C, NM_005564.4:c.47T>C, NM_005564.3:c.47T>C, XM_047423376.1:c.47T>C, NP_005555.2:p.Leu16Pro, XP_047279332.1:p.Leu16Pro

Select item 142952202619.

rs1429522026 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:128151711 (GRCh38)
9:130913990 (GRCh37)
Canonical SPDI:: NC_000009.12:128151710:A:G
Gene:: LCN2 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.128151711A>G, NC_000009.11:g.130913990A>G, NM_005564.5:c.349A>G, NM_005564.4:c.349A>G, NM_005564.3:c.349A>G, XM_047423376.1:c.349A>G, NP_005555.2:p.Ile117Val, XP_047279332.1:p.Ile117Val

Select item 142662014920.

rs1426620149 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:128150271 (GRCh38)
9:130912550 (GRCh37)
Canonical SPDI:: NC_000009.12:128150270:G:C
Gene:: LCN2 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.128150271G>C, NC_000009.11:g.130912550G>C, NM_005564.5:c.172G>C, NM_005564.4:c.172G>C, NM_005564.3:c.172G>C, XM_047423376.1:c.172G>C, NP_005555.2:p.Gly58Arg, XP_047279332.1:p.Gly58Arg

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