SNP Links for Protein (Select 45827776) - SNP

Links from Protein

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Select item 14900985721.

rs1490098572 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 14:59607365 (GRCh38)
14:60074083 (GRCh37)
Canonical SPDI:: NC_000014.9:59607364:T:C,NC_000014.9:59607364:T:G
Gene:: RTN1 (Varview)
Functional Consequence:: coding_sequence_variant,genic_downstream_transcript_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000047/1 (ALFA)
C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000014.9:g.59607365T>C, NC_000014.9:g.59607365T>G, NC_000014.8:g.60074083T>C, NC_000014.8:g.60074083T>G, NG_029558.1:g.268475A>G, NG_029558.1:g.268475A>C, NM_021136.3:c.1893A>G, NM_021136.3:c.1893A>C, NM_021136.2:c.1893A>G, NM_021136.2:c.1893A>C, NM_206852.3:c.189A>G, NM_206852.3:c.189A>C, NM_206852.2:c.189A>G, NM_206852.2:c.189A>C, NM_001363702.1:c.144A>G, NM_001363702.1:c.144A>C, NM_206857.1:c.633A>G, NM_206857.1:c.633A>C, NM_001243115.1:c.144A>G, NM_001243115.1:c.144A>C

Select item 14852007622.

rs1485200762 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:59630446 (GRCh38)
14:60097164 (GRCh37)
Canonical SPDI:: NC_000014.9:59630445:C:T
Gene:: RTN1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,genic_downstream_transcript_variant,missense_variant,coding_sequence_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000111/1 (ALFA)
T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000014.9:g.59630446C>T, NC_000014.8:g.60097164C>T, NG_029558.1:g.245394G>A, NM_206852.3:c.61G>A, NM_206852.2:c.61G>A, NM_001243115.1:c.-96G>A, NP_996734.1:p.Ala21Thr

Select item 14807168653.

rs1480716865 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:59607376 (GRCh38)
14:60074094 (GRCh37)
Canonical SPDI:: NC_000014.9:59607375:C:T
Gene:: RTN1 (Varview)
Functional Consequence:: coding_sequence_variant,genic_downstream_transcript_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.59607376C>T, NC_000014.8:g.60074094C>T, NG_029558.1:g.268464G>A, NM_021136.3:c.1882G>A, NM_021136.2:c.1882G>A, NM_206852.3:c.178G>A, NM_206852.2:c.178G>A, NM_001363702.1:c.133G>A, NM_206857.1:c.622G>A, NM_001243115.1:c.133G>A, NP_066959.1:p.Ala628Thr, NP_996734.1:p.Ala60Thr, NP_001350631.1:p.Ala45Thr

Select item 14755835054.

rs1475583505 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:59603232 (GRCh38)
14:60069950 (GRCh37)
Canonical SPDI:: NC_000014.9:59603231:C:T
Gene:: RTN1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.59603232C>T, NC_000014.8:g.60069950C>T, NG_029558.1:g.272608G>A, NM_021136.3:c.2209G>A, NM_021136.2:c.2209G>A, NM_206852.3:c.505G>A, NM_206852.2:c.505G>A, NM_001363702.1:c.460G>A, NM_206857.1:c.949G>A, NM_001243115.1:c.460G>A, NP_066959.1:p.Val737Ile, NP_996734.1:p.Val169Ile, NP_001350631.1:p.Val154Ile

Select item 14712082245.

rs1471208224 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 14:59603233 (GRCh38)
14:60069951 (GRCh37)
Canonical SPDI:: NC_000014.9:59603232:A:T
Gene:: RTN1 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant,genic_downstream_transcript_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000014.9:g.59603233A>T, NC_000014.8:g.60069951A>T, NG_029558.1:g.272607T>A, NM_021136.3:c.2208T>A, NM_021136.2:c.2208T>A, NM_206852.3:c.504T>A, NM_206852.2:c.504T>A, NM_001363702.1:c.459T>A, NM_206857.1:c.948T>A, NM_001243115.1:c.459T>A

Select item 14589991216.

rs1458999121 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:59603096 (GRCh38)
14:60069814 (GRCh37)
Canonical SPDI:: NC_000014.9:59603095:C:T
Gene:: RTN1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.59603096C>T, NC_000014.8:g.60069814C>T, NG_029558.1:g.272744G>A, NM_021136.3:c.2257G>A, NM_021136.2:c.2257G>A, NM_206852.3:c.553G>A, NM_206852.2:c.553G>A, NM_001363702.1:c.508G>A, NM_206857.1:c.997G>A, NM_001243115.1:c.508G>A, NP_066959.1:p.Val753Met, NP_996734.1:p.Val185Met, NP_001350631.1:p.Val170Met

Select item 14584753627.

rs1458475362 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 14:59607406 (GRCh38)
14:60074124 (GRCh37)
Canonical SPDI:: NC_000014.9:59607405:A:C
Gene:: RTN1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000014.9:g.59607406A>C, NC_000014.8:g.60074124A>C, NG_029558.1:g.268434T>G, NM_021136.3:c.1852T>G, NM_021136.2:c.1852T>G, NM_206852.3:c.148T>G, NM_206852.2:c.148T>G, NM_001363702.1:c.103T>G, NM_206857.1:c.592T>G, NM_001243115.1:c.103T>G, NP_066959.1:p.Phe618Val, NP_996734.1:p.Phe50Val, NP_001350631.1:p.Phe35Val

Select item 14583908478.

rs1458390847 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 14:59630449 (GRCh38)
14:60097167 (GRCh37)
Canonical SPDI:: NC_000014.9:59630448:G:C,NC_000014.9:59630448:G:T
Gene:: RTN1 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant,genic_upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000014.9:g.59630449G>C, NC_000014.9:g.59630449G>T, NC_000014.8:g.60097167G>C, NC_000014.8:g.60097167G>T, NG_029558.1:g.245391C>G, NG_029558.1:g.245391C>A, NM_206852.3:c.58C>G, NM_206852.3:c.58C>A, NM_206852.2:c.58C>G, NM_206852.2:c.58C>A, NM_001243115.1:c.-99C>G, NM_001243115.1:c.-99C>A, NP_996734.1:p.Gln20Glu, NP_996734.1:p.Gln20Lys

Select item 14546619919.

rs1454661991 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 14:59603102 (GRCh38)
14:60069820 (GRCh37)
Canonical SPDI:: NC_000014.9:59603101:C:G
Gene:: RTN1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.59603102C>G, NC_000014.8:g.60069820C>G, NG_029558.1:g.272738G>C, NM_021136.3:c.2251G>C, NM_021136.2:c.2251G>C, NM_206852.3:c.547G>C, NM_206852.2:c.547G>C, NM_001363702.1:c.502G>C, NM_206857.1:c.991G>C, NM_001243115.1:c.502G>C, NP_066959.1:p.Gly751Arg, NP_996734.1:p.Gly183Arg, NP_001350631.1:p.Gly168Arg

Select item 145119649510.

rs1451196495 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 14:59605407 (GRCh38)
14:60072125 (GRCh37)
Canonical SPDI:: NC_000014.9:59605406:C:T
Gene:: RTN1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.59605407C>T, NC_000014.8:g.60072125C>T, NG_029558.1:g.270433G>A, NM_021136.3:c.2073G>A, NM_021136.2:c.2073G>A, NM_206852.3:c.369G>A, NM_206852.2:c.369G>A, NM_001363702.1:c.324G>A, NM_206857.1:c.813G>A, NM_001243115.1:c.324G>A

Select item 144963855611.

rs1449638556 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 14:59630462 (GRCh38)
14:60097180 (GRCh37)
Canonical SPDI:: NC_000014.9:59630461:G:T
Gene:: RTN1 (Varview)
Functional Consequence:: coding_sequence_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,missense_variant
Validated:: by frequency
MAF:: T=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000014.9:g.59630462G>T, NC_000014.8:g.60097180G>T, NG_029558.1:g.245378C>A, NM_206852.3:c.45C>A, NM_206852.2:c.45C>A, NM_001243115.1:c.-112C>A, NP_996734.1:p.Ser15Arg

Select item 144542524512.

rs1445425245 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 14:59603247 (GRCh38)
14:60069965 (GRCh37)
Canonical SPDI:: NC_000014.9:59603246:T:C
Gene:: RTN1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.59603247T>C, NC_000014.8:g.60069965T>C, NG_029558.1:g.272593A>G, NM_021136.3:c.2194A>G, NM_021136.2:c.2194A>G, NM_206852.3:c.490A>G, NM_206852.2:c.490A>G, NM_001363702.1:c.445A>G, NM_206857.1:c.934A>G, NM_001243115.1:c.445A>G, NP_066959.1:p.Met732Val, NP_996734.1:p.Met164Val, NP_001350631.1:p.Met149Val

Select item 142634291713.

rs1426342917 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 14:59630471 (GRCh38)
14:60097189 (GRCh37)
Canonical SPDI:: NC_000014.9:59630470:A:G
Gene:: RTN1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,synonymous_variant,coding_sequence_variant,genic_downstream_transcript_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000014.9:g.59630471A>G, NC_000014.8:g.60097189A>G, NG_029558.1:g.245369T>C, NM_206852.3:c.36T>C, NM_206852.2:c.36T>C, NM_001243115.1:c.-121T>C

Select item 141578080214.

rs1415780802 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 14:59630465 (GRCh38)
14:60097183 (GRCh37)
Canonical SPDI:: NC_000014.9:59630464:C:G
Gene:: RTN1 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant,missense_variant,coding_sequence_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.59630465C>G, NC_000014.8:g.60097183C>G, NG_029558.1:g.245375G>C, NM_206852.3:c.42G>C, NM_206852.2:c.42G>C, NM_001243115.1:c.-115G>C, NP_996734.1:p.Trp14Cys

Select item 141059121615.

rs1410591216 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 14:59603086 (GRCh38)
14:60069804 (GRCh37)
Canonical SPDI:: NC_000014.9:59603085:T:C
Gene:: RTN1 (Varview)
Functional Consequence:: missense_variant,genic_downstream_transcript_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.59603086T>C, NC_000014.8:g.60069804T>C, NG_029558.1:g.272754A>G, NM_021136.3:c.2267A>G, NM_021136.2:c.2267A>G, NM_206852.3:c.563A>G, NM_206852.2:c.563A>G, NM_001363702.1:c.518A>G, NM_206857.1:c.1007A>G, NM_001243115.1:c.518A>G, NP_066959.1:p.His756Arg, NP_996734.1:p.His188Arg, NP_001350631.1:p.His173Arg

Select item 141007534316.

rs1410075343 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 14:59603901 (GRCh38)
14:60070619 (GRCh37)
Canonical SPDI:: NC_000014.9:59603900:G:A
Gene:: RTN1 (Varview)
Functional Consequence:: coding_sequence_variant,genic_downstream_transcript_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: A=0.000047/1 (ALFA)
A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000014.9:g.59603901G>A, NC_000014.8:g.60070619G>A, NG_029558.1:g.271939C>T, NM_021136.3:c.2133C>T, NM_021136.2:c.2133C>T, NM_206852.3:c.429C>T, NM_206852.2:c.429C>T, NM_001363702.1:c.384C>T, NM_206857.1:c.873C>T, NM_001243115.1:c.384C>T

Select item 139178572217.

rs1391785722 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 14:59603255 (GRCh38)
14:60069973 (GRCh37)
Canonical SPDI:: NC_000014.9:59603254:A:G
Gene:: RTN1 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.59603255A>G, NC_000014.8:g.60069973A>G, NG_029558.1:g.272585T>C, NM_021136.3:c.2186T>C, NM_021136.2:c.2186T>C, NM_206852.3:c.482T>C, NM_206852.2:c.482T>C, NM_001363702.1:c.437T>C, NM_206857.1:c.926T>C, NM_001243115.1:c.437T>C, NP_066959.1:p.Val729Ala, NP_996734.1:p.Val161Ala, NP_001350631.1:p.Val146Ala

Select item 139154238418.

rs1391542384 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 14:59630459 (GRCh38)
14:60097177 (GRCh37)
Canonical SPDI:: NC_000014.9:59630458:G:C
Gene:: RTN1 (Varview)
Functional Consequence:: coding_sequence_variant,genic_upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000028/1 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000014.9:g.59630459G>C, NC_000014.8:g.60097177G>C, NG_029558.1:g.245381C>G, NM_206852.3:c.48C>G, NM_206852.2:c.48C>G, NM_001243115.1:c.-109C>G, NP_996734.1:p.Asn16Lys

Select item 138598755519.

rs1385987555 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 14:59607352 (GRCh38)
14:60074070 (GRCh37)
Canonical SPDI:: NC_000014.9:59607351:T:C
Gene:: RTN1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000021/3 (GnomAD)
HGVS:: NC_000014.9:g.59607352T>C, NC_000014.8:g.60074070T>C, NG_029558.1:g.268488A>G, NM_021136.3:c.1906A>G, NM_021136.2:c.1906A>G, NM_206852.3:c.202A>G, NM_206852.2:c.202A>G, NM_001363702.1:c.157A>G, NM_206857.1:c.646A>G, NM_001243115.1:c.157A>G, NP_066959.1:p.Ile636Val, NP_996734.1:p.Ile68Val, NP_001350631.1:p.Ile53Val

Select item 138536979220.

rs1385369792 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 14:59607375 (GRCh38)
14:60074093 (GRCh37)
Canonical SPDI:: NC_000014.9:59607374:G:T
Gene:: RTN1 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.59607375G>T, NC_000014.8:g.60074093G>T, NG_029558.1:g.268465C>A, NM_021136.3:c.1883C>A, NM_021136.2:c.1883C>A, NM_206852.3:c.179C>A, NM_206852.2:c.179C>A, NM_001363702.1:c.134C>A, NM_206857.1:c.623C>A, NM_001243115.1:c.134C>A, NP_066959.1:p.Ala628Asp, NP_996734.1:p.Ala60Asp, NP_001350631.1:p.Ala45Asp

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