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Links from Protein

Items: 1 to 20 of 621

1.

rs1489349789 [Homo sapiens]
    Variant type:
    DELINS
    Alleles:
    ->GTGGACGGCAAGTGAGTCCGAGGCC [Show Flanks]
    Chromosome:
    19:17577450 (GRCh38)
    19:17688260 (GRCh37)
    Canonical SPDI:
    NC_000019.10:17577450:GAGGCCGTGGACGGCAAGTGAGTCCGAGGCC:GAGGCCGTGGACGGCAAGTGAGTCCGAGGCCGTGGACGGCAAGTGAGTCCGAGGCC
    Gene:
    COLGALT1 (Varview)
    Functional Consequence:
    splice_donor_variant,intron_variant,coding_sequence_variant
    Validated:
    by frequency,by alfa,by cluster
    MAF:
    GAGGCCGTGGACGGCAAGTGAGTCCGAGGCCGTGGACGGCAAGTGAGTCCGAGGCC=0.000071/1 (ALFA)
    GAGGCCGTGGACGGCAAGTGAGTCC=0.000009/1 (GnomAD_exomes)
    GAGGCCGTGGACGGCAAGTGAGTCC=0.000014/2 (GnomAD)
    HGVS:
    2.

    rs1489317357 [Homo sapiens]
      Variant type:
      SNV
      Alleles:
      A>G [Show Flanks]
      Chromosome:
      19:17568683 (GRCh38)
      19:17679492 (GRCh37)
      Canonical SPDI:
      NC_000019.10:17568682:A:G
      Gene:
      COLGALT1 (Varview)
      Functional Consequence:
      genic_upstream_transcript_variant,missense_variant,coding_sequence_variant
      Validated:
      by frequency
      MAF:
      G=0.000004/1 (GnomAD_exomes)
      HGVS:
      4.

      rs1484749048 [Homo sapiens]
        Variant type:
        SNV
        Alleles:
        T>C [Show Flanks]
        Chromosome:
        19:17560394 (GRCh38)
        19:17671203 (GRCh37)
        Canonical SPDI:
        NC_000019.10:17560393:T:C
        Gene:
        COLGALT1 (Varview)
        Functional Consequence:
        genic_upstream_transcript_variant,missense_variant,coding_sequence_variant
        Validated:
        by frequency,by alfa,by cluster
        MAF:
        C=0./0 (ALFA)
        C=0.000007/1 (GnomAD)
        C=0.000012/3 (GnomAD_exomes)
        HGVS:
        5.

        rs1483645587 [Homo sapiens]
          Variant type:
          SNV
          Alleles:
          A>G [Show Flanks]
          Chromosome:
          19:17568534 (GRCh38)
          19:17679343 (GRCh37)
          Canonical SPDI:
          NC_000019.10:17568533:A:G
          Gene:
          COLGALT1 (Varview)
          Functional Consequence:
          genic_upstream_transcript_variant,missense_variant,coding_sequence_variant
          Validated:
          by frequency,by alfa
          MAF:
          G=0./0 (ALFA)
          G=0.000004/1 (TOPMED)
          HGVS:
          6.

          rs1483245156 [Homo sapiens]
            Variant type:
            SNV
            Alleles:
            G>T [Show Flanks]
            Chromosome:
            19:17577384 (GRCh38)
            19:17688193 (GRCh37)
            Canonical SPDI:
            NC_000019.10:17577383:G:T
            Gene:
            COLGALT1 (Varview)
            Functional Consequence:
            synonymous_variant,coding_sequence_variant
            Validated:
            by frequency,by alfa,by cluster
            MAF:
            T=0./0 (ALFA)
            T=0.000007/1 (GnomAD)
            T=0.000008/2 (TOPMED)
            HGVS:
            8.

            rs1481404600 [Homo sapiens]
              Variant type:
              SNV
              Alleles:
              T>C [Show Flanks]
              Chromosome:
              19:17560349 (GRCh38)
              19:17671158 (GRCh37)
              Canonical SPDI:
              NC_000019.10:17560348:T:C
              Gene:
              COLGALT1 (Varview)
              Functional Consequence:
              genic_upstream_transcript_variant,missense_variant,coding_sequence_variant
              Validated:
              by frequency
              MAF:
              C=0.000004/1 (GnomAD_exomes)
              HGVS:
              9.
              10.

              rs1478523191 [Homo sapiens]
                Variant type:
                SNV
                Alleles:
                T>G [Show Flanks]
                Chromosome:
                19:17560428 (GRCh38)
                19:17671237 (GRCh37)
                Canonical SPDI:
                NC_000019.10:17560427:T:G
                Gene:
                COLGALT1 (Varview)
                Functional Consequence:
                genic_upstream_transcript_variant,missense_variant,coding_sequence_variant
                Clinical significance:
                pathogenic
                Validated:
                by frequency,by alfa,by cluster
                MAF:
                G=0./0 (ALFA)
                G=0.00004/1 (TOMMO)
                HGVS:
                12.

                rs1473759762 [Homo sapiens]
                  Variant type:
                  SNV
                  Alleles:
                  G>A [Show Flanks]
                  Chromosome:
                  19:17572540 (GRCh38)
                  19:17683349 (GRCh37)
                  Canonical SPDI:
                  NC_000019.10:17572539:G:A
                  Gene:
                  COLGALT1 (Varview)
                  Functional Consequence:
                  missense_variant,coding_sequence_variant
                  Validated:
                  by frequency,by alfa,by cluster
                  MAF:
                  A=0.000028/1 (ALFA)
                  A=0.000008/2 (GnomAD_exomes)
                  A=0.000008/2 (TOPMED)
                  A=0.000035/1 (TOMMO)
                  HGVS:
                  15.

                  rs1471115740 [Homo sapiens]
                    Variant type:
                    SNV
                    Alleles:
                    A>G [Show Flanks]
                    Chromosome:
                    19:17568588 (GRCh38)
                    19:17679397 (GRCh37)
                    Canonical SPDI:
                    NC_000019.10:17568587:A:G
                    Gene:
                    COLGALT1 (Varview)
                    Functional Consequence:
                    genic_upstream_transcript_variant,missense_variant,coding_sequence_variant
                    Validated:
                    by frequency,by alfa,by cluster
                    MAF:
                    G=0.000056/2 (ALFA)
                    G=0.000004/1 (TOPMED)
                    G=0.000007/1 (GnomAD)
                    G=0.000008/2 (GnomAD_exomes)
                    HGVS:
                    16.

                    rs1469904504 [Homo sapiens]
                      Variant type:
                      SNV
                      Alleles:
                      C>T [Show Flanks]
                      Chromosome:
                      19:17581415 (GRCh38)
                      19:17692224 (GRCh37)
                      Canonical SPDI:
                      NC_000019.10:17581414:C:T
                      Gene:
                      COLGALT1 (Varview)
                      Functional Consequence:
                      synonymous_variant,coding_sequence_variant
                      Validated:
                      by frequency,by alfa,by cluster
                      MAF:
                      T=0./0 (ALFA)
                      T=0.000004/1 (GnomAD_exomes)
                      T=0.000004/1 (TOPMED)
                      T=0.000007/1 (GnomAD)
                      HGVS:
                      18.

                      rs1467876864 [Homo sapiens]
                        Variant type:
                        SNV
                        Alleles:
                        C>T [Show Flanks]
                        Chromosome:
                        19:17579584 (GRCh38)
                        19:17690393 (GRCh37)
                        Canonical SPDI:
                        NC_000019.10:17579583:C:T
                        Gene:
                        COLGALT1 (Varview)
                        Functional Consequence:
                        missense_variant,coding_sequence_variant
                        Validated:
                        by frequency,by alfa,by cluster
                        MAF:
                        T=0.000142/2 (ALFA)
                        T=0.000009/1 (GnomAD)
                        T=0.000015/4 (TOPMED)
                        T=0.000071/1 (TOMMO)
                        HGVS:
                        19.

                        rs1463299649 [Homo sapiens]
                          Variant type:
                          SNV
                          Alleles:
                          C>G [Show Flanks]
                          Chromosome:
                          19:17560378 (GRCh38)
                          19:17671187 (GRCh37)
                          Canonical SPDI:
                          NC_000019.10:17560377:C:G
                          Gene:
                          COLGALT1 (Varview)
                          Functional Consequence:
                          missense_variant,coding_sequence_variant,genic_upstream_transcript_variant
                          Validated:
                          by frequency,by alfa,by cluster
                          MAF:
                          G=0./0 (ALFA)
                          G=0.000007/1 (GnomAD)
                          HGVS:

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